RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ZMYM3Q14202 1370 aa17.38■□□□□ 0.37
SMAD4-211ENST00000590499 DUOX2Q9NRD8 1548 aa17.37■□□□□ 0.37
SMAD4-211ENST00000590499 KIF3BO15066 747 aa17.37■□□□□ 0.37
SMAD4-211ENST00000590499 MROH1Q8NDA8 1641 aa17.36■□□□□ 0.37
SMAD4-211ENST00000590499 NPATQ14207 1427 aa17.36■□□□□ 0.37
SMAD4-211ENST00000590499 KDM5DQ9BY66 1539 aa17.36■□□□□ 0.37
SMAD4-211ENST00000590499 KIF15Q9NS87 1388 aa17.35■□□□□ 0.37
SMAD4-211ENST00000590499 ADGRL2O95490 1459 aa17.34■□□□□ 0.37
SMAD4-211ENST00000590499 PTPRKQ15262 1439 aa17.33■□□□□ 0.36
SMAD4-211ENST00000590499 UHRF1BP1Q6BDS2 1440 aa17.33■□□□□ 0.36
SMAD4-211ENST00000590499 ERBINQ96RT1 1412 aa17.32■□□□□ 0.36
SMAD4-211ENST00000590499 MAP3K13O43283 966 aa17.32■□□□□ 0.36
SMAD4-211ENST00000590499 HSPA2P54652 639 aa17.32■□□□□ 0.36
SMAD4-211ENST00000590499 NCOA1Q15788 1441 aa17.31■□□□□ 0.36
SMAD4-211ENST00000590499 ZC3H13Q5T200 1668 aaKnown RBP17.31■□□□□ 0.36
SMAD4-211ENST00000590499 DEPDC5O75140 1603 aa17.3■□□□□ 0.36
SMAD4-211ENST00000590499 FAM50AQ14320 339 aaKnown RBP17.3■□□□□ 0.36
SMAD4-211ENST00000590499 ABCC3O15438 1527 aa17.3■□□□□ 0.36
SMAD4-211ENST00000590499 ANKRD30AQ9BXX3 1397 aa17.29■□□□□ 0.36
SMAD4-211ENST00000590499 MYO3AQ8NEV4 1616 aa17.29■□□□□ 0.36
SMAD4-211ENST00000590499 TIE1P35590 1138 aa17.29■□□□□ 0.36
SMAD4-211ENST00000590499 PRDM15P57071 1507 aaPredicted RBP17.29■□□□□ 0.36
SMAD4-211ENST00000590499 PZPP20742 1482 aa17.29■□□□□ 0.36
SMAD4-211ENST00000590499 PPARGC1BQ86YN6 1023 aaKnown RBP17.28■□□□□ 0.36
SMAD4-211ENST00000590499 RRP7BPQ9NSQ0 103 aa17.28■□□□□ 0.36
SMAD4-211ENST00000590499 ZNF142P52746 1687 aaPredicted RBP17.28■□□□□ 0.36
SMAD4-211ENST00000590499 CHIC2Q9UKJ5 165 aa17.27■□□□□ 0.36
SMAD4-211ENST00000590499 CEP152O94986 1710 aa17.27■□□□□ 0.35
SMAD4-211ENST00000590499 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.27■□□□□ 0.35
SMAD4-211ENST00000590499 WASHC2CQ9Y4E1 1318 aa17.26■□□□□ 0.35
SMAD4-211ENST00000590499 STRCQ7RTU9 1775 aa17.26■□□□□ 0.35
SMAD4-211ENST00000590499 RASEFQ8IZ41 740 aa17.26■□□□□ 0.35
SMAD4-211ENST00000590499 MIER1Q8N108 512 aa17.24■□□□□ 0.35
SMAD4-211ENST00000590499 CAMSAP1Q5T5Y3 1602 aa17.24■□□□□ 0.35
SMAD4-211ENST00000590499 CEP170BQ9Y4F5 1589 aaPredicted RBP17.23■□□□□ 0.35
SMAD4-211ENST00000590499 RRBP1Q9P2E9 1410 aaKnown RBP17.23■□□□□ 0.35
SMAD4-211ENST00000590499 COLQQ9Y215 455 aaPredicted RBP17.23■□□□□ 0.35
SMAD4-211ENST00000590499 VWDEQ8N2E2 1590 aa17.23■□□□□ 0.35
SMAD4-211ENST00000590499 SPATA31D1Q6ZQQ2 1576 aa17.21■□□□□ 0.35
SMAD4-211ENST00000590499 ROCK1Q13464 1354 aa17.21■□□□□ 0.35
SMAD4-211ENST00000590499 TNRQ92752 1358 aa17.2■□□□□ 0.34
SMAD4-211ENST00000590499 TTLL13PA6NNM8 815 aa17.2■□□□□ 0.34
SMAD4-211ENST00000590499 FBXO31Q5XUX0 539 aaPredicted RBP17.2■□□□□ 0.34
SMAD4-211ENST00000590499 ANKRD50Q9ULJ7 1429 aa17.2■□□□□ 0.34
SMAD4-211ENST00000590499 LMTK2Q8IWU2 1503 aa17.19■□□□□ 0.34
SMAD4-211ENST00000590499 A2ML1A8K2U0 1454 aa17.18■□□□□ 0.34
SMAD4-211ENST00000590499 PLEKHG5O94827 1062 aa17.18■□□□□ 0.34
SMAD4-211ENST00000590499 ARHGAP31Q2M1Z3 1444 aa17.18■□□□□ 0.34
SMAD4-211ENST00000590499 ERVK-7P63135 1459 aa17.18■□□□□ 0.34
SMAD4-211ENST00000590499 CFAP65Q6ZU64 1925 aaKnown RBP17.17■□□□□ 0.34
SMAD4-211ENST00000590499 PLA2R1Q13018 1463 aa17.16■□□□□ 0.34
SMAD4-211ENST00000590499 UNC13BO14795 1591 aa17.15■□□□□ 0.34
SMAD4-211ENST00000590499 NLRP1Q9C000 1473 aa17.15■□□□□ 0.34
SMAD4-211ENST00000590499 SEC24BO95487 1268 aa17.14■□□□□ 0.33
SMAD4-211ENST00000590499 PLCD3Q8N3E9 789 aa17.14■□□□□ 0.33
SMAD4-211ENST00000590499 KANK1Q14678 1352 aa17.14■□□□□ 0.33
SMAD4-211ENST00000590499 EFCAB6Q5THR3 1501 aa17.13■□□□□ 0.33
SMAD4-211ENST00000590499 PTPRTO14522 1441 aa17.13■□□□□ 0.33
SMAD4-211ENST00000590499 ITGAEP38570 1179 aa17.1■□□□□ 0.33
SMAD4-211ENST00000590499 TET3O43151 1660 aa17.1■□□□□ 0.33
SMAD4-211ENST00000590499 FBXO3Q9UK99 471 aa17.09■□□□□ 0.33
SMAD4-211ENST00000590499 UGGT1Q9NYU2 1555 aa17.09■□□□□ 0.33
SMAD4-211ENST00000590499 POLR1AO95602 1720 aaPredicted RBP17.08■□□□□ 0.32
SMAD4-211ENST00000590499 UBR1Q8IWV7 1749 aa17.07■□□□□ 0.32
SMAD4-211ENST00000590499 GCC2Q8IWJ2 1684 aa17.07■□□□□ 0.32
SMAD4-211ENST00000590499 IQGAP3Q86VI3 1631 aa17.07■□□□□ 0.32
SMAD4-211ENST00000590499 IER5LQ5T953 404 aa17.07■□□□□ 0.32
SMAD4-211ENST00000590499 TRIM35Q9UPQ4 493 aa17.07■□□□□ 0.32
SMAD4-211ENST00000590499 SYNMO15061 1565 aa17.06■□□□□ 0.32
SMAD4-211ENST00000590499 NEURL4Q96JN8 1562 aa17.06■□□□□ 0.32
SMAD4-211ENST00000590499 NOS1P29475 1434 aa17.06■□□□□ 0.32
SMAD4-211ENST00000590499 NCKAP5LQ9HCH0 1330 aa17.06■□□□□ 0.32
SMAD4-211ENST00000590499 PKD2Q13563 968 aa17.06■□□□□ 0.32
SMAD4-211ENST00000590499 SGIP1Q9BQI5 828 aa17.06■□□□□ 0.32
SMAD4-211ENST00000590499 RPRD2Q5VT52 1461 aaKnown RBP17.05■□□□□ 0.32
SMAD4-211ENST00000590499 PCDHB13Q9Y5F0 798 aa17.04■□□□□ 0.32
SMAD4-211ENST00000590499 NAIPQ13075 1403 aa17.04■□□□□ 0.32
SMAD4-211ENST00000590499 PIK3C2BO00750 1634 aa17.03■□□□□ 0.32
SMAD4-211ENST00000590499 E9PCH4 1651 aa17.03■□□□□ 0.32
SMAD4-211ENST00000590499 KDM5AP29375 1690 aaKnown RBP17.03■□□□□ 0.32
SMAD4-211ENST00000590499 CDAN1Q8IWY9 1227 aa17.02■□□□□ 0.32
SMAD4-211ENST00000590499 THEMISQ8N1K5 641 aaPredicted RBP17.02■□□□□ 0.32
SMAD4-211ENST00000590499 LTBP4Q8N2S1 1624 aa17.01■□□□□ 0.31
SMAD4-211ENST00000590499 HFM1A2PYH4 1435 aa17.01■□□□□ 0.31
SMAD4-211ENST00000590499 SLIT1O75093 1534 aa17■□□□□ 0.31
SMAD4-211ENST00000590499 MED14O60244 1454 aa16.99■□□□□ 0.31
SMAD4-211ENST00000590499 ARHGAP23Q9P227 1491 aa16.99■□□□□ 0.31
SMAD4-211ENST00000590499 NUP155O75694 1391 aa16.99■□□□□ 0.31
SMAD4-211ENST00000590499 ILDR1Q86SU0 546 aaPredicted RBP16.98■□□□□ 0.31
SMAD4-211ENST00000590499 NUBP1P53384 320 aa16.97■□□□□ 0.31
SMAD4-211ENST00000590499 IDI1Q13907 227 aa16.97■□□□□ 0.31
SMAD4-211ENST00000590499 ZBTB47Q9UFB7 747 aaPredicted RBP16.97■□□□□ 0.31
SMAD4-211ENST00000590499 ADGRB3O60242 1522 aa16.96■□□□□ 0.31
SMAD4-211ENST00000590499 ANKLE2Q86XL3 938 aa16.96■□□□□ 0.31
SMAD4-211ENST00000590499 IFNL1Q8IU54 200 aa16.96■□□□□ 0.31
SMAD4-211ENST00000590499 CERKQ8TCT0 537 aa16.96■□□□□ 0.31
SMAD4-211ENST00000590499 IQGAP1P46940 1657 aa16.96■□□□□ 0.31
SMAD4-211ENST00000590499 NPHP4O75161 1426 aaPredicted RBP16.95■□□□□ 0.3
SMAD4-211ENST00000590499 SCAF11Q99590 1463 aaKnown RBP16.94■□□□□ 0.3
SMAD4-211ENST00000590499 SLAIN1Q8ND83 568 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms