RNA–Protein interactions for RNA: ENST00000582892.1

NF1-222, Transcript of neurofibromin 1, human

TSL 4

Gene NF1, Length 462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-222	ENST00000582892	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
NF1-222	ENST00000582892	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.76	□□□□□ -0.53
NF1-222	ENST00000582892	KIF3B	O15066	747 aa		11.75	□□□□□ -0.53
NF1-222	ENST00000582892	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.75	□□□□□ -0.53
NF1-222	ENST00000582892	DHX29	Q7Z478	1369 aa	Known RBP	11.75	□□□□□ -0.53
NF1-222	ENST00000582892	FAM135B	Q49AJ0	1406 aa		11.75	□□□□□ -0.53
NF1-222	ENST00000582892	PLEKHH2	Q8IVE3	1493 aa		11.75	□□□□□ -0.53
NF1-222	ENST00000582892	MBD5	Q9P267	1494 aa		11.75	□□□□□ -0.53
NF1-222	ENST00000582892	TIAM1	Q13009	1591 aa		11.75	□□□□□ -0.53
NF1-222	ENST00000582892	PHLPP1	O60346	1717 aa		11.74	□□□□□ -0.53
NF1-222	ENST00000582892	SPOCK2	Q92563	424 aa		11.74	□□□□□ -0.53
NF1-222	ENST00000582892	RBM33	Q96EV2	1170 aa	Known RBP	11.74	□□□□□ -0.53
NF1-222	ENST00000582892	LRP6	O75581	1613 aa		11.74	□□□□□ -0.53
NF1-222	ENST00000582892	MAP3K1	Q13233	1512 aa		11.73	□□□□□ -0.53
NF1-222	ENST00000582892	CEP152	O94986	1710 aa		11.72	□□□□□ -0.53
NF1-222	ENST00000582892	NCOA2	Q15596	1464 aa		11.72	□□□□□ -0.53
NF1-222	ENST00000582892	WASHC2C	Q9Y4E1	1318 aa		11.72	□□□□□ -0.53
NF1-222	ENST00000582892	C19orf67	A6NJJ6	358 aa		11.72	□□□□□ -0.53
NF1-222	ENST00000582892	CD44	P16070	742 aa	Known RBP	11.72	□□□□□ -0.53
NF1-222	ENST00000582892	LTK	P29376	864 aa		11.72	□□□□□ -0.53
NF1-222	ENST00000582892	TRIM52	Q96A61	297 aa		11.72	□□□□□ -0.53
NF1-222	ENST00000582892	FYCO1	Q9BQS8	1478 aa		11.71	□□□□□ -0.53
NF1-222	ENST00000582892	CCNB3	Q8WWL7	1395 aa		11.71	□□□□□ -0.53
NF1-222	ENST00000582892	ABCC3	O15438	1527 aa		11.7	□□□□□ -0.54
NF1-222	ENST00000582892	ERVK-7	P63135	1459 aa		11.7	□□□□□ -0.54
NF1-222	ENST00000582892	SCAF11	Q99590	1463 aa	Known RBP	11.7	□□□□□ -0.54
NF1-222	ENST00000582892	TMEM94	Q12767	1356 aa		11.7	□□□□□ -0.54
NF1-222	ENST00000582892	FAM212A	Q96EL1	285 aa		11.7	□□□□□ -0.54
NF1-222	ENST00000582892	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.69	□□□□□ -0.54
NF1-222	ENST00000582892	COL16A1	Q07092	1604 aa	Predicted RBP	11.69	□□□□□ -0.54
NF1-222	ENST00000582892	MROH1	Q8NDA8	1641 aa		11.68	□□□□□ -0.54
NF1-222	ENST00000582892	ARHGAP23	Q9P227	1491 aa		11.68	□□□□□ -0.54
NF1-222	ENST00000582892	NUBP1	P53384	320 aa		11.67	□□□□□ -0.54
NF1-222	ENST00000582892	SLIT1	O75093	1534 aa		11.66	□□□□□ -0.54
NF1-222	ENST00000582892	CCDC141	Q6ZP82	1450 aa		11.65	□□□□□ -0.54
NF1-222	ENST00000582892	PIK3C2B	O00750	1634 aa		11.65	□□□□□ -0.54
NF1-222	ENST00000582892	GSE1	Q14687	1217 aa		11.65	□□□□□ -0.54
NF1-222	ENST00000582892	JCAD	Q9P266	1359 aa		11.65	□□□□□ -0.55
NF1-222	ENST00000582892	EP400	Q96L91	3159 aa		11.64	□□□□□ -0.55
NF1-222	ENST00000582892	TXNDC2	Q86VQ3	553 aa		11.64	□□□□□ -0.55
NF1-222	ENST00000582892	ZRANB1	Q9UGI0	708 aa		11.64	□□□□□ -0.55
NF1-222	ENST00000582892	CLCN6	P51797	869 aa		11.63	□□□□□ -0.55
NF1-222	ENST00000582892	CAMSAP2	Q08AD1	1489 aa		11.63	□□□□□ -0.55
NF1-222	ENST00000582892	DCAF8	Q5TAQ9	597 aa		11.62	□□□□□ -0.55
NF1-222	ENST00000582892	RASEF	Q8IZ41	740 aa		11.62	□□□□□ -0.55
NF1-222	ENST00000582892	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.62	□□□□□ -0.55
NF1-222	ENST00000582892	MTUS2	Q5JR59	1369 aa		11.62	□□□□□ -0.55
NF1-222	ENST00000582892	LRRC9	Q6ZRR7	1453 aa		11.62	□□□□□ -0.55
NF1-222	ENST00000582892	PRDM15	P57071	1507 aa	Predicted RBP	11.61	□□□□□ -0.55
NF1-222	ENST00000582892	NWD1	Q149M9	1564 aa		11.61	□□□□□ -0.55
NF1-222	ENST00000582892	SHPRH	Q149N8	1683 aa		11.61	□□□□□ -0.55
NF1-222	ENST00000582892	TET3	O43151	1660 aa		11.6	□□□□□ -0.55
NF1-222	ENST00000582892	KDM5A	P29375	1690 aa	Known RBP	11.6	□□□□□ -0.55
NF1-222	ENST00000582892	SETBP1	Q9Y6X0	1596 aa		11.6	□□□□□ -0.55
NF1-222	ENST00000582892	PROSER2	Q86WR7	435 aa	Predicted RBP	11.6	□□□□□ -0.55
NF1-222	ENST00000582892	SLC26A8	Q96RN1	970 aa		11.6	□□□□□ -0.55
NF1-222	ENST00000582892	MEX3C	Q5U5Q3	659 aa	Known RBP	11.59	□□□□□ -0.55
NF1-222	ENST00000582892	RGS12	O14924	1447 aa		11.59	□□□□□ -0.55
NF1-222	ENST00000582892	EHBP1L1	Q8N3D4	1523 aa		11.58	□□□□□ -0.56
NF1-222	ENST00000582892	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.57	□□□□□ -0.56
NF1-222	ENST00000582892	TMEM2	Q9UHN6	1383 aa		11.57	□□□□□ -0.56
NF1-222	ENST00000582892	KCNA6	P17658	529 aa		11.57	□□□□□ -0.56
NF1-222	ENST00000582892	RXRB	P28702	533 aa		11.57	□□□□□ -0.56
NF1-222	ENST00000582892	ZNF772	Q68DY9	489 aa	Predicted RBP	11.57	□□□□□ -0.56
NF1-222	ENST00000582892	ZNF579	Q8NAF0	562 aa	Known RBP	11.57	□□□□□ -0.56
NF1-222	ENST00000582892	SLAIN2	Q9P270	581 aa		11.57	□□□□□ -0.56
NF1-222	ENST00000582892	ARHGEF5	Q12774	1597 aa		11.57	□□□□□ -0.56
NF1-222	ENST00000582892	DIP2A	Q14689	1571 aa		11.57	□□□□□ -0.56
NF1-222	ENST00000582892	NKTR	P30414	1462 aa	Known RBP	11.57	□□□□□ -0.56
NF1-222	ENST00000582892	CHD2	O14647	1828 aa	Known RBP	11.56	□□□□□ -0.56
NF1-222	ENST00000582892	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.56	□□□□□ -0.56
NF1-222	ENST00000582892	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.56	□□□□□ -0.56
NF1-222	ENST00000582892	MSH6	P52701	1360 aa		11.55	□□□□□ -0.56
NF1-222	ENST00000582892	MAST1	Q9Y2H9	1570 aa		11.55	□□□□□ -0.56
NF1-222	ENST00000582892	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.55	□□□□□ -0.56
NF1-222	ENST00000582892	MYO5B	Q9ULV0	1848 aa		11.55	□□□□□ -0.56
NF1-222	ENST00000582892	CEP162	Q5TB80	1403 aa		11.54	□□□□□ -0.56
NF1-222	ENST00000582892	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.54	□□□□□ -0.56
NF1-222	ENST00000582892	NUTM2E	B1AL46	878 aa	Predicted RBP	11.54	□□□□□ -0.56
NF1-222	ENST00000582892	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.54	□□□□□ -0.56
NF1-222	ENST00000582892	EID1	Q9Y6B2	187 aa		11.54	□□□□□ -0.56
NF1-222	ENST00000582892	EFCAB6	Q5THR3	1501 aa		11.54	□□□□□ -0.56
NF1-222	ENST00000582892	SPATA31A6	Q5VVP1	1343 aa		11.54	□□□□□ -0.56
NF1-222	ENST00000582892	FGD6	Q6ZV73	1430 aa		11.53	□□□□□ -0.56
NF1-222	ENST00000582892	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.53	□□□□□ -0.56
NF1-222	ENST00000582892	HRC	P23327	699 aa		11.53	□□□□□ -0.56
NF1-222	ENST00000582892	CCDC61	Q9Y6R9	512 aa		11.53	□□□□□ -0.56
NF1-222	ENST00000582892	AFF2	P51816	1311 aa		11.53	□□□□□ -0.56
NF1-222	ENST00000582892	EVX2	Q03828	476 aa		11.51	□□□□□ -0.57
NF1-222	ENST00000582892	LOC105371045	A0A1W2PR82	267 aa		11.5	□□□□□ -0.57
NF1-222	ENST00000582892	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.49	□□□□□ -0.57
NF1-222	ENST00000582892	ARHGAP31	Q2M1Z3	1444 aa		11.49	□□□□□ -0.57
NF1-222	ENST00000582892	ADGRB3	O60242	1522 aa		11.49	□□□□□ -0.57
NF1-222	ENST00000582892	IDI1	Q13907	227 aa		11.48	□□□□□ -0.57
NF1-222	ENST00000582892	SGIP1	Q9BQI5	828 aa		11.47	□□□□□ -0.57
NF1-222	ENST00000582892	NHSL1	Q5SYE7	1610 aa		11.46	□□□□□ -0.57
NF1-222	ENST00000582892	TSPY4	P0CV99	314 aa		11.46	□□□□□ -0.57
NF1-222	ENST00000582892	TSPY10	P0CW01	314 aa		11.46	□□□□□ -0.57
NF1-222	ENST00000582892	GCC2	Q8IWJ2	1684 aa		11.46	□□□□□ -0.58
NF1-222	ENST00000582892	DUOX2	Q9NRD8	1548 aa		11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms