RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 PTPRKQ15262 1439 aa4.97□□□□□ -1.61
SMG6-208ENST00000570874 MYOM3Q5VTT5 1437 aa4.97□□□□□ -1.61
SMG6-208ENST00000570874 RGL2O15211 777 aa4.97□□□□□ -1.61
SMG6-208ENST00000570874 PPM1GO15355 546 aaPredicted RBP4.97□□□□□ -1.61
SMG6-208ENST00000570874 CHGAP10645 457 aaKnown RBP4.97□□□□□ -1.61
SMG6-208ENST00000570874 FAM50AQ14320 339 aaKnown RBP4.97□□□□□ -1.61
SMG6-208ENST00000570874 CCER1Q8TC90 406 aaPredicted RBP4.97□□□□□ -1.61
SMG6-208ENST00000570874 STAG3Q9UJ98 1225 aa4.97□□□□□ -1.61
SMG6-208ENST00000570874 ABCC2Q92887 1545 aa4.97□□□□□ -1.61
SMG6-208ENST00000570874 TCOF1Q13428 1488 aaKnown RBP4.96□□□□□ -1.62
SMG6-208ENST00000570874 CERS3Q8IU89 383 aa4.96□□□□□ -1.62
SMG6-208ENST00000570874 ZFP91Q96JP5 570 aaPredicted RBP4.96□□□□□ -1.62
SMG6-208ENST00000570874 CWC22Q9HCG8 908 aaKnown RBP4.96□□□□□ -1.62
SMG6-208ENST00000570874 CCDC61Q9Y6R9 512 aa4.96□□□□□ -1.62
SMG6-208ENST00000570874 TROQ12816 1431 aaPredicted RBP4.96□□□□□ -1.62
SMG6-208ENST00000570874 SAMD9LQ8IVG5 1584 aa4.95□□□□□ -1.62
SMG6-208ENST00000570874 ABCC10Q5T3U5 1492 aa4.95□□□□□ -1.62
SMG6-208ENST00000570874 DHX57Q6P158 1386 aaKnown RBP4.95□□□□□ -1.62
SMG6-208ENST00000570874 CCDC82Q8N4S0 544 aa4.95□□□□□ -1.62
SMG6-208ENST00000570874 TSPYL2Q9H2G4 693 aaPredicted RBP4.95□□□□□ -1.62
SMG6-208ENST00000570874 TRIM35Q9UPQ4 493 aa4.95□□□□□ -1.62
SMG6-208ENST00000570874 MAPKBP1O60336 1514 aa4.95□□□□□ -1.62
SMG6-208ENST00000570874 PTPRGP23470 1445 aa4.95□□□□□ -1.62
SMG6-208ENST00000570874 CAMSAP2Q08AD1 1489 aa4.94□□□□□ -1.62
SMG6-208ENST00000570874 RAB3GAP2Q9H2M9 1393 aa4.94□□□□□ -1.62
SMG6-208ENST00000570874 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.94□□□□□ -1.62
SMG6-208ENST00000570874 CANXP27824 592 aaKnown RBP4.94□□□□□ -1.62
SMG6-208ENST00000570874 SLC24A3Q9HC58 644 aa4.94□□□□□ -1.62
SMG6-208ENST00000570874 UACAQ9BZF9 1416 aa4.94□□□□□ -1.62
SMG6-208ENST00000570874 TSPOAP1O95153 1857 aa4.94□□□□□ -1.62
SMG6-208ENST00000570874 CFAP65Q6ZU64 1925 aaKnown RBP4.93□□□□□ -1.62
SMG6-208ENST00000570874 GPATCH8Q9UKJ3 1502 aaKnown RBP4.93□□□□□ -1.62
SMG6-208ENST00000570874 CCDC125Q86Z20 511 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 NAP1L5Q96NT1 182 aaPredicted RBP4.93□□□□□ -1.62
SMG6-208ENST00000570874 SETD5Q9C0A6 1442 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 GZF1Q9H116 711 aaPredicted RBP4.93□□□□□ -1.62
SMG6-208ENST00000570874 MYT1LQ9UL68 1186 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 BRPF3Q9ULD4 1205 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 RIMBP3CA6NJZ7 1639 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 RIMBP3BA6NNM3 1639 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 RIMBP3Q9UFD9 1639 aa4.93□□□□□ -1.62
SMG6-208ENST00000570874 ZNF644Q9H582 1327 aaPredicted RBP4.93□□□□□ -1.62
SMG6-208ENST00000570874 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.92□□□□□ -1.62
SMG6-208ENST00000570874 PLCG2P16885 1265 aa4.92□□□□□ -1.62
SMG6-208ENST00000570874 SETQ01105 290 aaPredicted RBP4.92□□□□□ -1.62
SMG6-208ENST00000570874 ZC3H15Q8WU90 426 aaKnown RBP4.92□□□□□ -1.62
SMG6-208ENST00000570874 SPOCK2Q92563 424 aa4.92□□□□□ -1.62
SMG6-208ENST00000570874 DAPK1P53355 1430 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 NAIPQ13075 1403 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 MAP3K13O43283 966 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 NCLP19338 710 aaKnown RBP4.91□□□□□ -1.62
SMG6-208ENST00000570874 CHIC2Q9UKJ5 165 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 UHRF1BP1LA0JNW5 1464 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 SYCP2Q9BX26 1530 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 KDM5BQ9UGL1 1544 aa4.91□□□□□ -1.62
SMG6-208ENST00000570874 ABCA9Q8IUA7 1624 aa4.9□□□□□ -1.62
SMG6-208ENST00000570874 ABCC5O15440 1437 aa4.9□□□□□ -1.62
SMG6-208ENST00000570874 MIA2Q96PC5 1412 aa4.9□□□□□ -1.62
SMG6-208ENST00000570874 DENND4BO75064 1496 aaPredicted RBP4.9□□□□□ -1.62
SMG6-208ENST00000570874 PTMSP20962 102 aa4.9□□□□□ -1.63
SMG6-208ENST00000570874 CCDC27Q2M243 656 aa4.9□□□□□ -1.63
SMG6-208ENST00000570874 PROM2Q8N271 834 aa4.9□□□□□ -1.63
SMG6-208ENST00000570874 RRP7BPQ9NSQ0 103 aa4.9□□□□□ -1.63
SMG6-208ENST00000570874 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.9□□□□□ -1.63
SMG6-208ENST00000570874 ARHGEF5Q12774 1597 aa4.9□□□□□ -1.63
SMG6-208ENST00000570874 KIF13AQ9H1H9 1805 aa4.9□□□□□ -1.63
SMG6-208ENST00000570874 HFM1A2PYH4 1435 aa4.89□□□□□ -1.63
SMG6-208ENST00000570874 ARHGAP5Q13017 1502 aa4.89□□□□□ -1.63
SMG6-208ENST00000570874 ZNF777Q9ULD5 760 aaPredicted RBP4.89□□□□□ -1.63
SMG6-208ENST00000570874 ABCC1P33527 1531 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 ARHGEF12Q9NZN5 1544 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 PLEKHD1A6NEE1 506 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 SPDYE4A6NLX3 237 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 IRX6P78412 446 aaPredicted RBP4.88□□□□□ -1.63
SMG6-208ENST00000570874 TEX2Q8IWB9 1127 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 FBXW7Q969H0 707 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 WDR70Q9NW82 654 aa4.88□□□□□ -1.63
SMG6-208ENST00000570874 MAST1Q9Y2H9 1570 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 PPRC1Q5VV67 1664 aaKnown RBP4.87□□□□□ -1.63
SMG6-208ENST00000570874 CEP152O94986 1710 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 KIDINS220Q9ULH0 1771 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 A0A0U1RQG5 324 aaPredicted RBP4.87□□□□□ -1.63
SMG6-208ENST00000570874 CENPBP07199 599 aaPredicted RBP4.87□□□□□ -1.63
SMG6-208ENST00000570874 FLIIQ13045 1269 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 MKRN3Q13064 507 aaKnown RBP4.87□□□□□ -1.63
SMG6-208ENST00000570874 TMED8Q6PL24 325 aaPredicted RBP4.87□□□□□ -1.63
SMG6-208ENST00000570874 HS6ST3Q8IZP7 471 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 CCDC136Q96JN2 1154 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 KCNH8Q96L42 1107 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 SIN3AQ96ST3 1273 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 PLCD4Q9BRC7 762 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 PRDM16Q9HAZ2 1276 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 AMOTL2Q9Y2J4 779 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 AKNAQ7Z591 1439 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 ADGRL2O95490 1459 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 PLXNC1O60486 1568 aa4.87□□□□□ -1.63
SMG6-208ENST00000570874 IRX5P78411 483 aaPredicted RBP4.86□□□□□ -1.63
SMG6-208ENST00000570874 ZNF526Q8TF50 670 aaPredicted RBP4.86□□□□□ -1.63
SMG6-208ENST00000570874 CFDP1Q9UEE9 299 aaPredicted RBP4.86□□□□□ -1.63
SMG6-208ENST00000570874 MBD5Q9P267 1494 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms