RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 AMER1Q5JTC6 1135 aaPredicted RBP9.67□□□□□ -0.86
VPS53-208ENST00000570650 SLC39A7Q92504 469 aa9.66□□□□□ -0.86
VPS53-208ENST00000570650 METRNQ9UJH8 293 aa9.66□□□□□ -0.86
VPS53-208ENST00000570650 A2ML1A8K2U0 1454 aa9.66□□□□□ -0.86
VPS53-208ENST00000570650 LRRIQ1Q96JM4 1722 aa9.65□□□□□ -0.86
VPS53-208ENST00000570650 GGT6Q6P531 493 aa9.65□□□□□ -0.86
VPS53-208ENST00000570650 ZNF777Q9ULD5 760 aaPredicted RBP9.65□□□□□ -0.86
VPS53-208ENST00000570650 A2MP01023 1474 aa9.65□□□□□ -0.87
VPS53-208ENST00000570650 CCDC18Q5T9S5 1454 aa9.65□□□□□ -0.87
VPS53-208ENST00000570650 SHANK2Q9UPX8 1470 aa9.65□□□□□ -0.87
VPS53-208ENST00000570650 PLXNC1O60486 1568 aa9.64□□□□□ -0.87
VPS53-208ENST00000570650 C7P10643 843 aa9.64□□□□□ -0.87
VPS53-208ENST00000570650 ATP7AQ04656 1500 aa9.64□□□□□ -0.87
VPS53-208ENST00000570650 SYCP2Q9BX26 1530 aa9.64□□□□□ -0.87
VPS53-208ENST00000570650 CDC42BPAQ5VT25 1732 aa9.64□□□□□ -0.87
VPS53-208ENST00000570650 DNMT1P26358 1616 aaKnown RBP9.64□□□□□ -0.87
VPS53-208ENST00000570650 POTEFA5A3E0 1075 aa9.63□□□□□ -0.87
VPS53-208ENST00000570650 HNRNPMP52272 730 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS53-208ENST00000570650 CABP2Q9NPB3 220 aa9.63□□□□□ -0.87
VPS53-208ENST00000570650 COLQQ9Y215 455 aaPredicted RBP9.62□□□□□ -0.87
VPS53-208ENST00000570650 KIAA1107Q9UPP5 1409 aa9.62□□□□□ -0.87
VPS53-208ENST00000570650 NEURL4Q96JN8 1562 aa9.62□□□□□ -0.87
VPS53-208ENST00000570650 INO80Q9ULG1 1556 aaPredicted RBP9.62□□□□□ -0.87
VPS53-208ENST00000570650 POLR1AO95602 1720 aaPredicted RBP9.62□□□□□ -0.87
VPS53-208ENST00000570650 PLEKHH2Q8IVE3 1493 aa9.61□□□□□ -0.87
VPS53-208ENST00000570650 IER5LQ5T953 404 aa9.61□□□□□ -0.87
VPS53-208ENST00000570650 BCL11BQ9C0K0 894 aaPredicted RBP9.61□□□□□ -0.87
VPS53-208ENST00000570650 CASKIN1Q8WXD9 1431 aa9.61□□□□□ -0.87
VPS53-208ENST00000570650 GPATCH8Q9UKJ3 1502 aaKnown RBP9.61□□□□□ -0.87
VPS53-208ENST00000570650 ANKLE2Q86XL3 938 aa9.6□□□□□ -0.87
VPS53-208ENST00000570650 TAOK2Q9UL54 1235 aa9.6□□□□□ -0.87
VPS53-208ENST00000570650 TNRQ92752 1358 aa9.6□□□□□ -0.87
VPS53-208ENST00000570650 ALKQ9UM73 1620 aa9.6□□□□□ -0.87
VPS53-208ENST00000570650 VWDEQ8N2E2 1590 aa9.59□□□□□ -0.87
VPS53-208ENST00000570650 POTEB2H3BUK9 544 aa9.59□□□□□ -0.87
VPS53-208ENST00000570650 STK25O00506 426 aa9.59□□□□□ -0.87
VPS53-208ENST00000570650 GOLGA2Q08379 1002 aa9.59□□□□□ -0.87
VPS53-208ENST00000570650 IRX5P78411 483 aaPredicted RBP9.58□□□□□ -0.88
VPS53-208ENST00000570650 MKRN3Q13064 507 aaKnown RBP9.58□□□□□ -0.88
VPS53-208ENST00000570650 EFCAB3Q8N7B9 438 aa9.58□□□□□ -0.88
VPS53-208ENST00000570650 CFDP1Q9UEE9 299 aaPredicted RBP9.58□□□□□ -0.88
VPS53-208ENST00000570650 STK24Q9Y6E0 443 aa9.58□□□□□ -0.88
VPS53-208ENST00000570650 ADGBQ8N7X0 1667 aa9.58□□□□□ -0.88
VPS53-208ENST00000570650 NPHP4O75161 1426 aaPredicted RBP9.57□□□□□ -0.88
VPS53-208ENST00000570650 FBXO31Q5XUX0 539 aaPredicted RBP9.57□□□□□ -0.88
VPS53-208ENST00000570650 THEMISQ8N1K5 641 aaPredicted RBP9.57□□□□□ -0.88
VPS53-208ENST00000570650 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS53-208ENST00000570650 MED14O60244 1454 aa9.57□□□□□ -0.88
VPS53-208ENST00000570650 PZPP20742 1482 aa9.57□□□□□ -0.88
VPS53-208ENST00000570650 SEC24BO95487 1268 aa9.56□□□□□ -0.88
VPS53-208ENST00000570650 RGS17Q9UGC6 210 aaPredicted RBP9.56□□□□□ -0.88
VPS53-208ENST00000570650 FYCO1Q9BQS8 1478 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 NLRP1Q9C000 1473 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 CCNB3Q8WWL7 1395 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 LHX8Q68G74 356 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 DEPDC5O75140 1603 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 RNF17Q9BXT8 1623 aaKnown RBP9.55□□□□□ -0.88
VPS53-208ENST00000570650 LRRC7Q96NW7 1537 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 FAM135AQ9P2D6 1515 aa9.55□□□□□ -0.88
VPS53-208ENST00000570650 UGGT1Q9NYU2 1555 aa9.54□□□□□ -0.88
VPS53-208ENST00000570650 DHX29Q7Z478 1369 aaKnown RBP9.54□□□□□ -0.88
VPS53-208ENST00000570650 CHGAP10645 457 aaKnown RBP9.54□□□□□ -0.88
VPS53-208ENST00000570650 KDM5DQ9BY66 1539 aa9.54□□□□□ -0.88
VPS53-208ENST00000570650 RTEL1-TNFRSF6BF6WH68 1400 aa9.54□□□□□ -0.88
VPS53-208ENST00000570650 MIA2Q96PC5 1412 aa9.54□□□□□ -0.88
VPS53-208ENST00000570650 IQGAP1P46940 1657 aa9.53□□□□□ -0.88
VPS53-208ENST00000570650 KIF3BO15066 747 aa9.53□□□□□ -0.88
VPS53-208ENST00000570650 POTEJP0CG39 1038 aa9.53□□□□□ -0.88
VPS53-208ENST00000570650 PLCG2P16885 1265 aa9.53□□□□□ -0.88
VPS53-208ENST00000570650 HS6ST3Q8IZP7 471 aa9.53□□□□□ -0.88
VPS53-208ENST00000570650 PDCD7Q8N8D1 485 aaKnown RBP9.53□□□□□ -0.88
VPS53-208ENST00000570650 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.53□□□□□ -0.881e-6■■□□□ 14.2
VPS53-208ENST00000570650 SYNMO15061 1565 aa9.53□□□□□ -0.88
VPS53-208ENST00000570650 OCEL1Q9H607 264 aa9.52□□□□□ -0.89
VPS53-208ENST00000570650 MBD5Q9P267 1494 aa9.52□□□□□ -0.89
VPS53-208ENST00000570650 WASHC2CQ9Y4E1 1318 aa9.52□□□□□ -0.89
VPS53-208ENST00000570650 STRCP1A6NGW2 1772 aa9.51□□□□□ -0.89
VPS53-208ENST00000570650 ZNF644Q9H582 1327 aaPredicted RBP9.51□□□□□ -0.89
VPS53-208ENST00000570650 POTEAQ6S8J7 498 aa9.5□□□□□ -0.89
VPS53-208ENST00000570650 MTUS2Q5JR59 1369 aa9.5□□□□□ -0.89
VPS53-208ENST00000570650 PHF8Q9UPP1 1060 aa9.49□□□□□ -0.89
VPS53-208ENST00000570650 SOX12O15370 315 aa9.48□□□□□ -0.89
VPS53-208ENST00000570650 DPY19L2Q6NUT2 758 aa9.48□□□□□ -0.89
VPS53-208ENST00000570650 TIAM1Q13009 1591 aa9.47□□□□□ -0.89
VPS53-208ENST00000570650 MFRPQ9BY79 579 aa9.47□□□□□ -0.89
VPS53-208ENST00000570650 FAM135BQ49AJ0 1406 aa9.47□□□□□ -0.89
VPS53-208ENST00000570650 CCDC141Q6ZP82 1450 aa9.47□□□□□ -0.89
VPS53-208ENST00000570650 ZC3H13Q5T200 1668 aaKnown RBP9.46□□□□□ -0.89
VPS53-208ENST00000570650 MS4A4AQ96JQ5 239 aa9.46□□□□□ -0.9
VPS53-208ENST00000570650 SCAF11Q99590 1463 aaKnown RBP9.46□□□□□ -0.9
VPS53-208ENST00000570650 RSPH4AQ5TD94 716 aa9.45□□□□□ -0.9
VPS53-208ENST00000570650 FBXO22Q8NEZ5 403 aa9.45□□□□□ -0.9
VPS53-208ENST00000570650 NKX1-1Q15270 411 aaPredicted RBP9.44□□□□□ -0.9
VPS53-208ENST00000570650 ERVK-7P63135 1459 aa9.44□□□□□ -0.9
VPS53-208ENST00000570650 EHBP1L1Q8N3D4 1523 aa9.44□□□□□ -0.9
VPS53-208ENST00000570650 ABCC3O15438 1527 aa9.43□□□□□ -0.9
VPS53-208ENST00000570650 CEP162Q5TB80 1403 aa9.43□□□□□ -0.9
VPS53-208ENST00000570650 TXNDC2Q86VQ3 553 aa9.43□□□□□ -0.9
VPS53-208ENST00000570650 OTUD5Q96G74 571 aa9.43□□□□□ -0.9
VPS53-208ENST00000570650 XIRP1Q702N8 1843 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms