RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 RIMS1Q86UR5 1692 aaKnown RBP9.54□□□□□ -0.88
CTDNEP1-204ENST00000570484 SPHKAPQ2M3C7 1700 aa9.53□□□□□ -0.88
CTDNEP1-204ENST00000570484 ZMYM3Q14202 1370 aa9.53□□□□□ -0.88
CTDNEP1-204ENST00000570484 TONSLQ96HA7 1378 aa9.53□□□□□ -0.88
CTDNEP1-204ENST00000570484 ANKRD30BQ9BXX2 1392 aa9.53□□□□□ -0.88
CTDNEP1-204ENST00000570484 ADAMTSL3P82987 1691 aa9.53□□□□□ -0.88
CTDNEP1-204ENST00000570484 SPATA31D1Q6ZQQ2 1576 aa9.53□□□□□ -0.88
CTDNEP1-204ENST00000570484 PREX1Q8TCU6 1659 aa9.52□□□□□ -0.89
CTDNEP1-204ENST00000570484 PTPRTO14522 1441 aa9.52□□□□□ -0.89
CTDNEP1-204ENST00000570484 NOS1P29475 1434 aa9.52□□□□□ -0.89
CTDNEP1-204ENST00000570484 NEUROD1Q13562 356 aa9.52□□□□□ -0.89
CTDNEP1-204ENST00000570484 TNRQ92752 1358 aa9.51□□□□□ -0.89
CTDNEP1-204ENST00000570484 ZEB1P37275 1124 aaPredicted RBP9.51□□□□□ -0.89
CTDNEP1-204ENST00000570484 AMER1Q5JTC6 1135 aaPredicted RBP9.51□□□□□ -0.89
CTDNEP1-204ENST00000570484 SYNMO15061 1565 aa9.5□□□□□ -0.89
CTDNEP1-204ENST00000570484 CLTCL1P53675 1640 aa9.5□□□□□ -0.89
CTDNEP1-204ENST00000570484 PITPNM1O00562 1244 aa9.5□□□□□ -0.89
CTDNEP1-204ENST00000570484 UGGT1Q9NYU2 1555 aa9.5□□□□□ -0.89
CTDNEP1-204ENST00000570484 C3P01024 1663 aa9.49□□□□□ -0.89
CTDNEP1-204ENST00000570484 PTPRMP28827 1452 aa9.49□□□□□ -0.89
CTDNEP1-204ENST00000570484 PLA2R1Q13018 1463 aa9.49□□□□□ -0.89
CTDNEP1-204ENST00000570484 CHGAP10645 457 aaKnown RBP9.49□□□□□ -0.89
CTDNEP1-204ENST00000570484 NLRP1Q9C000 1473 aa9.48□□□□□ -0.89
CTDNEP1-204ENST00000570484 ADGRB3O60242 1522 aa9.48□□□□□ -0.89
CTDNEP1-204ENST00000570484 FBXO31Q5XUX0 539 aaPredicted RBP9.48□□□□□ -0.89
CTDNEP1-204ENST00000570484 SIN3AQ96ST3 1273 aa9.48□□□□□ -0.89
CTDNEP1-204ENST00000570484 SLC52A1Q9NWF4 448 aa9.48□□□□□ -0.89
CTDNEP1-204ENST00000570484 PIK3C2BO00750 1634 aa9.47□□□□□ -0.89
CTDNEP1-204ENST00000570484 MYO3AQ8NEV4 1616 aa9.47□□□□□ -0.89
CTDNEP1-204ENST00000570484 CEBPAP49715 358 aaPredicted RBP9.47□□□□□ -0.89
CTDNEP1-204ENST00000570484 RTN4Q9NQC3 1192 aaKnown RBP9.47□□□□□ -0.89
CTDNEP1-204ENST00000570484 ZNF326Q5BKZ1 582 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-204ENST00000570484 UHRF1BP1Q6BDS2 1440 aa9.46□□□□□ -0.9
CTDNEP1-204ENST00000570484 MIER1Q8N108 512 aa9.45□□□□□ -0.9
CTDNEP1-204ENST00000570484 TIMELESSQ9UNS1 1208 aa9.45□□□□□ -0.9
CTDNEP1-204ENST00000570484 NEURL4Q96JN8 1562 aa9.45□□□□□ -0.9
CTDNEP1-204ENST00000570484 PRR29P0C7W0 189 aa9.44□□□□□ -0.9
CTDNEP1-204ENST00000570484 RGL3Q3MIN7 710 aa9.44□□□□□ -0.9
CTDNEP1-204ENST00000570484 CLEC11AQ9Y240 323 aa9.44□□□□□ -0.9
CTDNEP1-204ENST00000570484 CEP170BQ9Y4F5 1589 aaPredicted RBP9.44□□□□□ -0.9
CTDNEP1-204ENST00000570484 A2ML1A8K2U0 1454 aa9.43□□□□□ -0.9
CTDNEP1-204ENST00000570484 SPATA31E1Q6ZUB1 1445 aa9.43□□□□□ -0.9
CTDNEP1-204ENST00000570484 CHRDL2Q6WN34 429 aa9.43□□□□□ -0.9
CTDNEP1-204ENST00000570484 KIF1BO60333 1816 aa9.42□□□□□ -0.9
CTDNEP1-204ENST00000570484 IDI1Q13907 227 aa9.42□□□□□ -0.9
CTDNEP1-204ENST00000570484 PLCD3Q8N3E9 789 aa9.42□□□□□ -0.9
CTDNEP1-204ENST00000570484 CREBZFQ9NS37 354 aa9.42□□□□□ -0.9
CTDNEP1-204ENST00000570484 ZNF142P52746 1687 aaPredicted RBP9.42□□□□□ -0.9
CTDNEP1-204ENST00000570484 MYOM2P54296 1465 aa9.41□□□□□ -0.9
CTDNEP1-204ENST00000570484 PPP1R15AO75807 674 aaPredicted RBP9.41□□□□□ -0.9
CTDNEP1-204ENST00000570484 DCAF11Q8TEB1 546 aa9.41□□□□□ -0.9
CTDNEP1-204ENST00000570484 KDM5AP29375 1690 aaKnown RBP9.41□□□□□ -0.9
CTDNEP1-204ENST00000570484 TMEM131LA2VDJ0 1609 aa9.41□□□□□ -0.9
CTDNEP1-204ENST00000570484 RPGRIP1LQ68CZ1 1315 aa9.4□□□□□ -0.9
CTDNEP1-204ENST00000570484 KDM4FA0A1W2PPD8 638 aa9.4□□□□□ -0.9
CTDNEP1-204ENST00000570484 MNX1P50219 401 aaPredicted RBP9.4□□□□□ -0.9
CTDNEP1-204ENST00000570484 L3MBTL2Q969R5 705 aa9.4□□□□□ -0.9
CTDNEP1-204ENST00000570484 HDGFP51858 240 aaKnown RBP9.39□□□□□ -0.91
CTDNEP1-204ENST00000570484 STAC3Q96MF2 364 aa9.39□□□□□ -0.91
CTDNEP1-204ENST00000570484 KDM2AQ9Y2K7 1162 aa9.39□□□□□ -0.91
CTDNEP1-204ENST00000570484 NEXMIFQ5QGS0 1516 aa9.39□□□□□ -0.91
CTDNEP1-204ENST00000570484 UBR1Q8IWV7 1749 aa9.39□□□□□ -0.91
CTDNEP1-204ENST00000570484 RIMS2Q9UQ26 1411 aa9.39□□□□□ -0.91
CTDNEP1-204ENST00000570484 TMEM2Q9UHN6 1383 aa9.38□□□□□ -0.91
CTDNEP1-204ENST00000570484 THEMISQ8N1K5 641 aaPredicted RBP9.38□□□□□ -0.91
CTDNEP1-204ENST00000570484 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.38□□□□□ -0.91
CTDNEP1-204ENST00000570484 ZBTB47Q9UFB7 747 aaPredicted RBP9.38□□□□□ -0.91
CTDNEP1-204ENST00000570484 VGFO15240 615 aaPredicted RBP9.37□□□□□ -0.91
CTDNEP1-204ENST00000570484 SPOCK2Q92563 424 aa9.37□□□□□ -0.91
CTDNEP1-204ENST00000570484 EID1Q9Y6B2 187 aa9.37□□□□□ -0.91
CTDNEP1-204ENST00000570484 PRAG1Q86YV5 1406 aa9.37□□□□□ -0.91
CTDNEP1-204ENST00000570484 SLIT1O75093 1534 aa9.36□□□□□ -0.91
CTDNEP1-204ENST00000570484 PLEKHG5O94827 1062 aa9.36□□□□□ -0.91
CTDNEP1-204ENST00000570484 FXR2P51116 673 aaKnown RBP eCLIP9.36□□□□□ -0.91
CTDNEP1-204ENST00000570484 ZFYVE9O95405 1425 aa9.36□□□□□ -0.91
CTDNEP1-204ENST00000570484 RALGAPBQ86X10 1494 aa9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 SCAF11Q99590 1463 aaKnown RBP9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 PIK3C2GO75747 1445 aa9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 BCANQ96GW7 911 aa9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 IFT172Q9UG01 1749 aa9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 ROCK2O75116 1388 aaKnown RBP9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 CFAP65Q6ZU64 1925 aaKnown RBP9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 PPLO60437 1756 aa9.35□□□□□ -0.91
CTDNEP1-204ENST00000570484 LAMC1P11047 1609 aa9.34□□□□□ -0.91
CTDNEP1-204ENST00000570484 ARHGAP23Q9P227 1491 aa9.34□□□□□ -0.91
CTDNEP1-204ENST00000570484 NUTM2DQ5VT03 806 aaPredicted RBP9.34□□□□□ -0.91
CTDNEP1-204ENST00000570484 KLHL34Q8N239 644 aa9.34□□□□□ -0.91
CTDNEP1-204ENST00000570484 NRXN1Q9ULB1 1477 aa9.34□□□□□ -0.91
CTDNEP1-204ENST00000570484 PLEKHG1Q9ULL1 1385 aa9.33□□□□□ -0.92
CTDNEP1-204ENST00000570484 LMTK3Q96Q04 1460 aa9.33□□□□□ -0.92
CTDNEP1-204ENST00000570484 ADGRF5Q8IZF2 1346 aa9.32□□□□□ -0.92
CTDNEP1-204ENST00000570484 TXNDC2Q86VQ3 553 aa9.32□□□□□ -0.92
CTDNEP1-204ENST00000570484 ANKLE2Q86XL3 938 aa9.32□□□□□ -0.92
CTDNEP1-204ENST00000570484 TRPM1Q7Z4N2 1603 aa9.31□□□□□ -0.92
CTDNEP1-204ENST00000570484 MYO5BQ9ULV0 1848 aa9.31□□□□□ -0.92
CTDNEP1-204ENST00000570484 EIF3AQ14152 1382 aaKnown RBP9.31□□□□□ -0.92
CTDNEP1-204ENST00000570484 DIP2AQ14689 1571 aa9.31□□□□□ -0.92
CTDNEP1-204ENST00000570484 SETBP1Q9Y6X0 1596 aa9.31□□□□□ -0.92
CTDNEP1-204ENST00000570484 NUBP1P53384 320 aa9.3□□□□□ -0.92
CTDNEP1-204ENST00000570484 NBPF8Q3BBV2 869 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 144.4 ms