RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 AMER1Q5JTC6 1135 aaPredicted RBP13.37□□□□□ -0.27
LRRC28-216ENST00000559819 PLIN1O60240 522 aa13.37□□□□□ -0.27
LRRC28-216ENST00000559819 ADGRF5Q8IZF2 1346 aa13.37□□□□□ -0.27
LRRC28-216ENST00000559819 ERICH6Q7L0X2 663 aa13.36□□□□□ -0.27
LRRC28-216ENST00000559819 SYNMO15061 1565 aa13.34□□□□□ -0.27
LRRC28-216ENST00000559819 ZMYM4Q5VZL5 1548 aa13.33□□□□□ -0.28
LRRC28-216ENST00000559819 MYOM1P52179 1685 aa13.33□□□□□ -0.28
LRRC28-216ENST00000559819 CDCA8Q53HL2 280 aa13.33□□□□□ -0.28
LRRC28-216ENST00000559819 INSRP06213 1382 aa13.33□□□□□ -0.28
LRRC28-216ENST00000559819 ABCA6Q8N139 1617 aa13.33□□□□□ -0.28
LRRC28-216ENST00000559819 WDR43Q15061 677 aaKnown RBP eCLIP13.32□□□□□ -0.28
LRRC28-216ENST00000559819 STAC3Q96MF2 364 aa13.32□□□□□ -0.28
LRRC28-216ENST00000559819 ASXL1Q8IXJ9 1541 aa13.32□□□□□ -0.28
LRRC28-216ENST00000559819 EIF3AQ14152 1382 aaKnown RBP13.32□□□□□ -0.28
LRRC28-216ENST00000559819 PLEKHH1Q9ULM0 1364 aa13.32□□□□□ -0.28
LRRC28-216ENST00000559819 KIDINS220Q9ULH0 1771 aa13.32□□□□□ -0.28
LRRC28-216ENST00000559819 CHGAP10645 457 aaKnown RBP13.32□□□□□ -0.28
LRRC28-216ENST00000559819 MAP3K4Q9Y6R4 1608 aa13.32□□□□□ -0.28
LRRC28-216ENST00000559819 PPRC1Q5VV67 1664 aaKnown RBP13.31□□□□□ -0.28
LRRC28-216ENST00000559819 EFCAB6Q5THR3 1501 aa13.31□□□□□ -0.28
LRRC28-216ENST00000559819 MROH2AA6NES4 1674 aa13.31□□□□□ -0.28
LRRC28-216ENST00000559819 ERVK-7P63135 1459 aa13.3□□□□□ -0.28
LRRC28-216ENST00000559819 CRBNQ96SW2 442 aa13.3□□□□□ -0.28
LRRC28-216ENST00000559819 MYOM2P54296 1465 aa13.3□□□□□ -0.28
LRRC28-216ENST00000559819 CCDC146Q8IYE0 955 aa13.29□□□□□ -0.28
LRRC28-216ENST00000559819 DNAJC5Q9H3Z4 198 aa13.29□□□□□ -0.28
LRRC28-216ENST00000559819 KIAA1210Q9ULL0 1709 aa13.29□□□□□ -0.28
LRRC28-216ENST00000559819 KDM5AP29375 1690 aaKnown RBP13.28□□□□□ -0.28
LRRC28-216ENST00000559819 NOS1P29475 1434 aa13.28□□□□□ -0.28
LRRC28-216ENST00000559819 C20orf194Q5TEA3 1177 aa13.28□□□□□ -0.28
LRRC28-216ENST00000559819 GGT6Q6P531 493 aa13.28□□□□□ -0.28
LRRC28-216ENST00000559819 CARD14Q9BXL6 1004 aa13.28□□□□□ -0.28
LRRC28-216ENST00000559819 KIF1BO60333 1816 aa13.27□□□□□ -0.28
LRRC28-216ENST00000559819 PAK3O75914 559 aaPredicted RBP13.27□□□□□ -0.28
LRRC28-216ENST00000559819 ZNF518AQ6AHZ1 1483 aa13.27□□□□□ -0.28
LRRC28-216ENST00000559819 NEURL4Q96JN8 1562 aa13.27□□□□□ -0.28
LRRC28-216ENST00000559819 SKAP1Q86WV1 359 aa13.27□□□□□ -0.29
LRRC28-216ENST00000559819 NPM1P06748 294 aaKnown RBP eCLIP13.26□□□□□ -0.29
LRRC28-216ENST00000559819 PIK3C2GO75747 1445 aa13.26□□□□□ -0.29
LRRC28-216ENST00000559819 DUSP27Q5VZP5 1158 aa13.26□□□□□ -0.29
LRRC28-216ENST00000559819 IFT172Q9UG01 1749 aa13.26□□□□□ -0.29
LRRC28-216ENST00000559819 NOP58Q9Y2X3 529 aaKnown RBP13.26□□□□□ -0.29
LRRC28-216ENST00000559819 TRAK1Q9UPV9 953 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 ZNF521Q96K83 1311 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 CD109Q6YHK3 1445 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 LMTK2Q8IWU2 1503 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 FRMPD1Q5SYB0 1578 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 NPATQ14207 1427 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 NRXN1Q9ULB1 1477 aa13.25□□□□□ -0.29
LRRC28-216ENST00000559819 ADGRB3O60242 1522 aa13.24□□□□□ -0.29
LRRC28-216ENST00000559819 POGZQ7Z3K3 1410 aa13.24□□□□□ -0.29
LRRC28-216ENST00000559819 NPC1L1Q9UHC9 1359 aa13.24□□□□□ -0.29
LRRC28-216ENST00000559819 TMEM132EQ6IEE7 984 aa13.24□□□□□ -0.29
LRRC28-216ENST00000559819 GOLGA2Q08379 1002 aa13.23□□□□□ -0.29
LRRC28-216ENST00000559819 CFAP65Q6ZU64 1925 aaKnown RBP13.23□□□□□ -0.29
LRRC28-216ENST00000559819 ANP32AP39687 249 aaKnown RBP13.23□□□□□ -0.29
LRRC28-216ENST00000559819 NUTM2DQ5VT03 806 aaPredicted RBP13.23□□□□□ -0.29
LRRC28-216ENST00000559819 SPINK5Q9NQ38 1064 aaPredicted RBP13.23□□□□□ -0.29
LRRC28-216ENST00000559819 CENPJQ9HC77 1338 aaPredicted RBP13.22□□□□□ -0.29
LRRC28-216ENST00000559819 APAF1O14727 1248 aa13.22□□□□□ -0.29
LRRC28-216ENST00000559819 NPM2Q86SE8 214 aaKnown RBP13.22□□□□□ -0.29
LRRC28-216ENST00000559819 TCERG1O14776 1098 aaKnown RBP13.22□□□□□ -0.29
LRRC28-216ENST00000559819 RAPGEF3O95398 923 aa13.21□□□□□ -0.29
LRRC28-216ENST00000559819 SLFN5Q08AF3 891 aa13.21□□□□□ -0.29
LRRC28-216ENST00000559819 OSCARQ8IYS5 282 aa13.21□□□□□ -0.29
LRRC28-216ENST00000559819 PDE4AP27815 886 aa13.2□□□□□ -0.3
LRRC28-216ENST00000559819 IPO9Q96P70 1041 aaKnown RBP13.2□□□□□ -0.3
LRRC28-216ENST00000559819 SENP3Q9H4L4 574 aaPredicted RBP13.2□□□□□ -0.3
LRRC28-216ENST00000559819 TNNT2P45379 298 aaPredicted RBP13.2□□□□□ -0.3
LRRC28-216ENST00000559819 SLC12A5Q9H2X9 1139 aa13.19□□□□□ -0.3
LRRC28-216ENST00000559819 DMRT2Q9Y5R5 561 aa13.19□□□□□ -0.3
LRRC28-216ENST00000559819 MYO3AQ8NEV4 1616 aa13.19□□□□□ -0.3
LRRC28-216ENST00000559819 MLH3Q9UHC1 1453 aa13.19□□□□□ -0.3
LRRC28-216ENST00000559819 HECW2Q9P2P5 1572 aa13.19□□□□□ -0.3
LRRC28-216ENST00000559819 C14orf93Q9H972 538 aaKnown RBP13.19□□□□□ -0.3
LRRC28-216ENST00000559819 NSD3Q9BZ95 1437 aa13.19□□□□□ -0.3
LRRC28-216ENST00000559819 ABCC3O15438 1527 aa13.18□□□□□ -0.3
LRRC28-216ENST00000559819 SLC24A1O60721 1099 aa13.18□□□□□ -0.3
LRRC28-216ENST00000559819 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 SBNO2Q9Y2G9 1366 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 PPLO60437 1756 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 NBR1Q14596 966 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 ADGRB1O14514 1584 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 BACH2Q9BYV9 841 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 CFAP74Q9C0B2 1584 aa13.17□□□□□ -0.3
LRRC28-216ENST00000559819 TRMT2AQ8IZ69 625 aaKnown RBP13.16□□□□□ -0.3
LRRC28-216ENST00000559819 MORC1Q86VD1 984 aa13.16□□□□□ -0.3
LRRC28-216ENST00000559819 QRICH2Q9H0J4 1663 aa13.16□□□□□ -0.3
LRRC28-216ENST00000559819 ZBTB47Q9UFB7 747 aaPredicted RBP13.15□□□□□ -0.3
LRRC28-216ENST00000559819 SIGLEC1Q9BZZ2 1709 aa13.15□□□□□ -0.3
LRRC28-216ENST00000559819 BCAR3O75815 825 aa13.15□□□□□ -0.3
LRRC28-216ENST00000559819 MS4A1P11836 297 aa13.15□□□□□ -0.3
LRRC28-216ENST00000559819 ZC3H13Q5T200 1668 aaKnown RBP13.15□□□□□ -0.31
LRRC28-216ENST00000559819 KDM2BQ8NHM5 1336 aa13.14□□□□□ -0.31
LRRC28-216ENST00000559819 CAMSAP1Q5T5Y3 1602 aa13.14□□□□□ -0.31
LRRC28-216ENST00000559819 SAFB2Q14151 953 aaKnown RBP eCLIP13.13□□□□□ -0.31
LRRC28-216ENST00000559819 RRP7AQ9Y3A4 280 aaKnown RBP13.13□□□□□ -0.31
LRRC28-216ENST00000559819 POLR3AO14802 1390 aaPredicted RBP13.13□□□□□ -0.31
LRRC28-216ENST00000559819 NKTRP30414 1462 aaKnown RBP13.13□□□□□ -0.31
LRRC28-216ENST00000559819 NEUROD2Q15784 382 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms