RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RNF17Q9BXT8 1623 aaKnown RBP21.47■■□□□ 1.03
SHMT2-232ENST00000557487 RICTORQ6R327 1708 aa21.46■■□□□ 1.03
SHMT2-232ENST00000557487 DISP3Q9P2K9 1392 aa21.46■■□□□ 1.03
SHMT2-232ENST00000557487 POGZQ7Z3K3 1410 aa21.46■■□□□ 1.03
SHMT2-232ENST00000557487 DUOX2Q9NRD8 1548 aa21.46■■□□□ 1.03
SHMT2-232ENST00000557487 SYCP2Q9BX26 1530 aa21.45■■□□□ 1.02
SHMT2-232ENST00000557487 NBPF1Q3BBV0 1214 aa21.45■■□□□ 1.02
SHMT2-232ENST00000557487 STAC3Q96MF2 364 aa21.43■■□□□ 1.02
SHMT2-232ENST00000557487 PANK3Q9H999 370 aa21.43■■□□□ 1.02
SHMT2-232ENST00000557487 ABCC1P33527 1531 aa21.43■■□□□ 1.02
SHMT2-232ENST00000557487 SENP3-EIF4A1A0A087X0R7 540 aa21.42■■□□□ 1.02
SHMT2-232ENST00000557487 CDCA7LQ96GN5 454 aa21.42■■□□□ 1.02
SHMT2-232ENST00000557487 ZNF518AQ6AHZ1 1483 aa21.41■■□□□ 1.02
SHMT2-232ENST00000557487 CDCA8Q53HL2 280 aa21.39■■□□□ 1.02
SHMT2-232ENST00000557487 SALL2Q9Y467 1007 aaPredicted RBP21.39■■□□□ 1.02
SHMT2-232ENST00000557487 RGL3Q3MIN7 710 aa21.39■■□□□ 1.01
SHMT2-232ENST00000557487 CC2D1BQ5T0F9 858 aaKnown RBP21.39■■□□□ 1.01
SHMT2-232ENST00000557487 NPM2Q86SE8 214 aaKnown RBP21.39■■□□□ 1.01
SHMT2-232ENST00000557487 CRBNQ96SW2 442 aa21.38■■□□□ 1.01
SHMT2-232ENST00000557487 AFAP1Q8N556 730 aa21.37■■□□□ 1.01
SHMT2-232ENST00000557487 TRAPPC8Q9Y2L5 1435 aa21.36■■□□□ 1.01
SHMT2-232ENST00000557487 CENPQQ7L2Z9 268 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-232ENST00000557487 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-232ENST00000557487 SYNMO15061 1565 aa21.36■■□□□ 1.01
SHMT2-232ENST00000557487 NPC1L1Q9UHC9 1359 aa21.35■■□□□ 1.01
SHMT2-232ENST00000557487 KDM2BQ8NHM5 1336 aa21.34■■□□□ 1.01
SHMT2-232ENST00000557487 IQGAP1P46940 1657 aa21.34■■□□□ 1.01
SHMT2-232ENST00000557487 PIK3C2GO75747 1445 aa21.33■■□□□ 1.01
SHMT2-232ENST00000557487 MLH3Q9UHC1 1453 aa21.33■■□□□ 1.01
SHMT2-232ENST00000557487 ARHGEF40Q8TER5 1519 aa21.33■■□□□ 1.01
SHMT2-232ENST00000557487 KNSTRNQ9Y448 316 aa21.33■■□□□ 1
SHMT2-232ENST00000557487 ZFYVE16Q7Z3T8 1539 aa21.33■■□□□ 1
SHMT2-232ENST00000557487 EIF3AQ14152 1382 aaKnown RBP21.32■■□□□ 1
SHMT2-232ENST00000557487 NEFMP07197 916 aa21.32■■□□□ 1
SHMT2-232ENST00000557487 WDR43Q15061 677 aaKnown RBP eCLIP21.32■■□□□ 1
SHMT2-232ENST00000557487 ZNF521Q96K83 1311 aa21.31■■□□□ 1
SHMT2-232ENST00000557487 MADDQ8WXG6 1647 aa21.31■■□□□ 1
SHMT2-232ENST00000557487 YEATS2Q9ULM3 1422 aa21.31■■□□□ 1
SHMT2-232ENST00000557487 SLC24A1O60721 1099 aa21.31■■□□□ 1
SHMT2-232ENST00000557487 PLIN1O60240 522 aa21.3■■□□□ 1
SHMT2-232ENST00000557487 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.3■■□□□ 1
SHMT2-232ENST00000557487 ADAMTS8Q9UP79 889 aa21.3■■□□□ 1
SHMT2-232ENST00000557487 PPP2R1AP30153 589 aa21.29■■□□□ 1
SHMT2-232ENST00000557487 NGEFQ8N5V2 710 aa21.29■■□□□ 1
SHMT2-232ENST00000557487 DUSP27Q5VZP5 1158 aa21.29■■□□□ 1
SHMT2-232ENST00000557487 SCAF11Q99590 1463 aaKnown RBP21.29■■□□□ 1
SHMT2-232ENST00000557487 ASXL1Q8IXJ9 1541 aa21.29■■□□□ 1
SHMT2-232ENST00000557487 HECW2Q9P2P5 1572 aa21.29■■□□□ 1
SHMT2-232ENST00000557487 GOLGA2Q08379 1002 aa21.28■■□□□ 1
SHMT2-232ENST00000557487 TRPM2O94759 1503 aa21.27■■□□□ 1
SHMT2-232ENST00000557487 AMER1Q5JTC6 1135 aaPredicted RBP21.26■□□□□ 0.99
SHMT2-232ENST00000557487 SPHKAPQ2M3C7 1700 aa21.26■□□□□ 0.99
SHMT2-232ENST00000557487 KDM4FA0A1W2PPD8 638 aa21.25■□□□□ 0.99
SHMT2-232ENST00000557487 NEURL4Q96JN8 1562 aa21.25■□□□□ 0.99
SHMT2-232ENST00000557487 PLEKHH1Q9ULM0 1364 aa21.25■□□□□ 0.99
SHMT2-232ENST00000557487 FAM161AQ3B820 660 aa21.25■□□□□ 0.99
SHMT2-232ENST00000557487 SPAG9O60271 1321 aaKnown RBP21.24■□□□□ 0.99
SHMT2-232ENST00000557487 LAS1LQ9Y4W2 734 aaKnown RBP21.24■□□□□ 0.99
SHMT2-232ENST00000557487 KIAA1210Q9ULL0 1709 aa21.24■□□□□ 0.99
SHMT2-232ENST00000557487 PTPRTO14522 1441 aa21.23■□□□□ 0.99
SHMT2-232ENST00000557487 CEP152O94986 1710 aa21.23■□□□□ 0.99
SHMT2-232ENST00000557487 RTEL1-TNFRSF6BF6WH68 1400 aa21.22■□□□□ 0.99
SHMT2-232ENST00000557487 TRMT2AQ8IZ69 625 aaKnown RBP21.22■□□□□ 0.99
SHMT2-232ENST00000557487 KIDINS220Q9ULH0 1771 aa21.22■□□□□ 0.99
SHMT2-232ENST00000557487 DIP2CQ9Y2E4 1556 aa21.22■□□□□ 0.99
SHMT2-232ENST00000557487 SLFN5Q08AF3 891 aa21.21■□□□□ 0.99
SHMT2-232ENST00000557487 REREQ9P2R6 1566 aa21.21■□□□□ 0.99
SHMT2-232ENST00000557487 DAXXQ9UER7 740 aaPredicted RBP21.21■□□□□ 0.99
SHMT2-232ENST00000557487 INO80Q9ULG1 1556 aaPredicted RBP21.2■□□□□ 0.98
SHMT2-232ENST00000557487 C20orf194Q5TEA3 1177 aa21.19■□□□□ 0.98
SHMT2-232ENST00000557487 NINLQ9Y2I6 1382 aa21.19■□□□□ 0.98
SHMT2-232ENST00000557487 ABCA6Q8N139 1617 aa21.19■□□□□ 0.98
SHMT2-232ENST00000557487 ATP7AQ04656 1500 aa21.19■□□□□ 0.98
SHMT2-232ENST00000557487 NKTRP30414 1462 aaKnown RBP21.18■□□□□ 0.98
SHMT2-232ENST00000557487 MYOM1P52179 1685 aa21.17■□□□□ 0.98
SHMT2-232ENST00000557487 KDM5AP29375 1690 aaKnown RBP21.16■□□□□ 0.98
SHMT2-232ENST00000557487 DEPDC5O75140 1603 aa21.16■□□□□ 0.98
SHMT2-232ENST00000557487 SIGLEC1Q9BZZ2 1709 aa21.15■□□□□ 0.98
SHMT2-232ENST00000557487 E9PSI1 815 aa21.15■□□□□ 0.98
SHMT2-232ENST00000557487 C8orf34Q49A92 452 aa21.15■□□□□ 0.98
SHMT2-232ENST00000557487 AGLP35573 1532 aa21.14■□□□□ 0.98
SHMT2-232ENST00000557487 TET3O43151 1660 aa21.14■□□□□ 0.97
SHMT2-232ENST00000557487 ADAMTSL3P82987 1691 aa21.12■□□□□ 0.97
SHMT2-232ENST00000557487 GSE1Q14687 1217 aa21.12■□□□□ 0.97
SHMT2-232ENST00000557487 CLTCL1P53675 1640 aa21.11■□□□□ 0.97
SHMT2-232ENST00000557487 NFKBIBQ15653 356 aa21.11■□□□□ 0.97
SHMT2-232ENST00000557487 MYOM2P54296 1465 aa21.1■□□□□ 0.97
SHMT2-232ENST00000557487 CGNL1Q0VF96 1302 aa21.1■□□□□ 0.97
SHMT2-232ENST00000557487 AAMPQ13685 434 aa21.1■□□□□ 0.97
SHMT2-232ENST00000557487 PDE3AQ14432 1141 aa21.1■□□□□ 0.97
SHMT2-232ENST00000557487 AEBP2Q6ZN18 517 aaPredicted RBP21.1■□□□□ 0.97
SHMT2-232ENST00000557487 VWDEQ8N2E2 1590 aa21.09■□□□□ 0.97
SHMT2-232ENST00000557487 KANK1Q14678 1352 aa21.08■□□□□ 0.97
SHMT2-232ENST00000557487 SBNO2Q9Y2G9 1366 aa21.06■□□□□ 0.96
SHMT2-232ENST00000557487 MAPK8IP3Q9UPT6 1336 aa21.06■□□□□ 0.96
SHMT2-232ENST00000557487 SKAP1Q86WV1 359 aa21.06■□□□□ 0.96
SHMT2-232ENST00000557487 ZMYM3Q14202 1370 aa21.05■□□□□ 0.96
SHMT2-232ENST00000557487 VIRMAQ69YN4 1812 aaKnown RBP21.05■□□□□ 0.96
SHMT2-232ENST00000557487 POLR3AO14802 1390 aaPredicted RBP21.05■□□□□ 0.96
SHMT2-232ENST00000557487 MYO3AQ8NEV4 1616 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms