RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 DISP3Q9P2K9 1392 aa13.82□□□□□ -0.2
VRK1-206ENST00000557222 A2ML1A8K2U0 1454 aa13.81□□□□□ -0.2
VRK1-206ENST00000557222 CCDC141Q6ZP82 1450 aa13.81□□□□□ -0.2
VRK1-206ENST00000557222 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
VRK1-206ENST00000557222 NCOA2Q15596 1464 aa13.8□□□□□ -0.2
VRK1-206ENST00000557222 KIF3BO15066 747 aa13.8□□□□□ -0.2
VRK1-206ENST00000557222 ATN1P54259 1190 aaPredicted RBP13.8□□□□□ -0.2
VRK1-206ENST00000557222 LHX8Q68G74 356 aa13.8□□□□□ -0.2
VRK1-206ENST00000557222 TSPY4P0CV99 314 aa13.79□□□□□ -0.2
VRK1-206ENST00000557222 TSPY10P0CW01 314 aa13.79□□□□□ -0.2
VRK1-206ENST00000557222 ZNF335Q9H4Z2 1342 aaPredicted RBP13.79□□□□□ -0.2
VRK1-206ENST00000557222 TNRQ92752 1358 aa13.78□□□□□ -0.2
VRK1-206ENST00000557222 PZPP20742 1482 aa13.78□□□□□ -0.2
VRK1-206ENST00000557222 CAMSAP2Q08AD1 1489 aa13.78□□□□□ -0.2
VRK1-206ENST00000557222 CHRM1P11229 460 aaPredicted RBP13.77□□□□□ -0.21
VRK1-206ENST00000557222 DNMT1P26358 1616 aaKnown RBP13.77□□□□□ -0.21
VRK1-206ENST00000557222 ARHGEF5Q12774 1597 aa13.77□□□□□ -0.21
VRK1-206ENST00000557222 KDM5DQ9BY66 1539 aa13.77□□□□□ -0.21
VRK1-206ENST00000557222 WASHC2CQ9Y4E1 1318 aa13.77□□□□□ -0.21
VRK1-206ENST00000557222 TTLL13PA6NNM8 815 aa13.76□□□□□ -0.21
VRK1-206ENST00000557222 THEMISQ8N1K5 641 aaPredicted RBP13.76□□□□□ -0.21
VRK1-206ENST00000557222 UBAP1LF5GYI3 381 aa13.75□□□□□ -0.21
VRK1-206ENST00000557222 SOCS7O14512 581 aa13.75□□□□□ -0.21
VRK1-206ENST00000557222 FBXO31Q5XUX0 539 aaPredicted RBP13.75□□□□□ -0.21
VRK1-206ENST00000557222 PCDHB8Q9UN66 801 aa13.75□□□□□ -0.21
VRK1-206ENST00000557222 NLRP1Q9C000 1473 aa13.74□□□□□ -0.21
VRK1-206ENST00000557222 MIA2Q96PC5 1412 aa13.74□□□□□ -0.21
VRK1-206ENST00000557222 ILDR2Q71H61 639 aa13.74□□□□□ -0.21
VRK1-206ENST00000557222 ANKLE2Q86XL3 938 aa13.74□□□□□ -0.21
VRK1-206ENST00000557222 SLC39A7Q92504 469 aa13.73□□□□□ -0.21
VRK1-206ENST00000557222 MAP3K1Q13233 1512 aa13.73□□□□□ -0.21
VRK1-206ENST00000557222 CPS1P31327 1500 aa13.72□□□□□ -0.21
VRK1-206ENST00000557222 LRRC9Q6ZRR7 1453 aa13.72□□□□□ -0.21
VRK1-206ENST00000557222 VPS8Q8N3P4 1428 aa13.72□□□□□ -0.21
VRK1-206ENST00000557222 SPATA31D1Q6ZQQ2 1576 aa13.71□□□□□ -0.21
VRK1-206ENST00000557222 C7P10643 843 aa13.71□□□□□ -0.21
VRK1-206ENST00000557222 METRNQ9UJH8 293 aa13.71□□□□□ -0.21
VRK1-206ENST00000557222 MAST1Q9Y2H9 1570 aa13.71□□□□□ -0.22
VRK1-206ENST00000557222 MED14O60244 1454 aa13.7□□□□□ -0.22
VRK1-206ENST00000557222 SHANK2Q9UPX8 1470 aa13.69□□□□□ -0.22
VRK1-206ENST00000557222 TOM1O60784 492 aa13.69□□□□□ -0.22
VRK1-206ENST00000557222 TMEM106CQ9BVX2 250 aa13.69□□□□□ -0.22
VRK1-206ENST00000557222 NEURL4Q96JN8 1562 aa13.69□□□□□ -0.22
VRK1-206ENST00000557222 POLR1AO95602 1720 aaPredicted RBP13.69□□□□□ -0.22
VRK1-206ENST00000557222 RNF17Q9BXT8 1623 aaKnown RBP13.68□□□□□ -0.22
VRK1-206ENST00000557222 UGGT1Q9NYU2 1555 aa13.68□□□□□ -0.22
VRK1-206ENST00000557222 ZNF467Q7Z7K2 595 aaPredicted RBP13.68□□□□□ -0.22
VRK1-206ENST00000557222 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.68□□□□□ -0.22
VRK1-206ENST00000557222 DEPDC5O75140 1603 aa13.68□□□□□ -0.22
VRK1-206ENST00000557222 MYOM3Q5VTT5 1437 aa13.67□□□□□ -0.22
VRK1-206ENST00000557222 TRIM35Q9UPQ4 493 aa13.67□□□□□ -0.22
VRK1-206ENST00000557222 EIF2AK4Q9P2K8 1649 aaKnown RBP13.67□□□□□ -0.22
VRK1-206ENST00000557222 ZC3H13Q5T200 1668 aaKnown RBP13.66□□□□□ -0.22
VRK1-206ENST00000557222 NPHP4O75161 1426 aaPredicted RBP13.65□□□□□ -0.22
VRK1-206ENST00000557222 ABCC3O15438 1527 aa13.65□□□□□ -0.22
VRK1-206ENST00000557222 POTEB2H3BUK9 544 aa13.64□□□□□ -0.23
VRK1-206ENST00000557222 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
VRK1-206ENST00000557222 VWDEQ8N2E2 1590 aa13.63□□□□□ -0.23
VRK1-206ENST00000557222 ERVK-7P63135 1459 aa13.63□□□□□ -0.23
VRK1-206ENST00000557222 DUOX2Q9NRD8 1548 aa13.63□□□□□ -0.23
VRK1-206ENST00000557222 LOC105371045A0A1W2PR82 267 aa13.62□□□□□ -0.23
VRK1-206ENST00000557222 ARHGAP31Q2M1Z3 1444 aa13.62□□□□□ -0.23
VRK1-206ENST00000557222 HSPA1LP34931 641 aa13.6□□□□□ -0.23
VRK1-206ENST00000557222 MROH1Q8NDA8 1641 aa13.6□□□□□ -0.23
VRK1-206ENST00000557222 IQGAP1P46940 1657 aa13.59□□□□□ -0.23
VRK1-206ENST00000557222 ERBINQ96RT1 1412 aa13.59□□□□□ -0.23
VRK1-206ENST00000557222 POTEFA5A3E0 1075 aa13.59□□□□□ -0.23
VRK1-206ENST00000557222 PIP4K2BP78356 416 aa13.59□□□□□ -0.23
VRK1-206ENST00000557222 KIF15Q9NS87 1388 aa13.58□□□□□ -0.23
VRK1-206ENST00000557222 ABCC5O15440 1437 aa13.57□□□□□ -0.24
VRK1-206ENST00000557222 IER5LQ5T953 404 aa13.57□□□□□ -0.24
VRK1-206ENST00000557222 SCAF11Q99590 1463 aaKnown RBP13.56□□□□□ -0.24
VRK1-206ENST00000557222 ARHGAP23Q9P227 1491 aa13.56□□□□□ -0.24
VRK1-206ENST00000557222 SLIT1O75093 1534 aa13.56□□□□□ -0.24
VRK1-206ENST00000557222 PRDM15P57071 1507 aaPredicted RBP13.56□□□□□ -0.24
VRK1-206ENST00000557222 PSEN1P49768 467 aa13.56□□□□□ -0.24
VRK1-206ENST00000557222 LRRC7Q96NW7 1537 aa13.55□□□□□ -0.24
VRK1-206ENST00000557222 COLQQ9Y215 455 aaPredicted RBP13.55□□□□□ -0.24
VRK1-206ENST00000557222 EID1Q9Y6B2 187 aa13.55□□□□□ -0.24
VRK1-206ENST00000557222 UBR1Q8IWV7 1749 aa13.55□□□□□ -0.24
VRK1-206ENST00000557222 KANK1Q14678 1352 aa13.55□□□□□ -0.24
VRK1-206ENST00000557222 SYNMO15061 1565 aa13.54□□□□□ -0.24
VRK1-206ENST00000557222 PDAP1Q13442 181 aaKnown RBP13.54□□□□□ -0.24
VRK1-206ENST00000557222 TXNDC2Q86VQ3 553 aa13.54□□□□□ -0.24
VRK1-206ENST00000557222 RRP7BPQ9NSQ0 103 aa13.54□□□□□ -0.24
VRK1-206ENST00000557222 CEP152O94986 1710 aa13.53□□□□□ -0.24
VRK1-206ENST00000557222 CFAP65Q6ZU64 1925 aaKnown RBP13.53□□□□□ -0.24
VRK1-206ENST00000557222 SEC24BO95487 1268 aa13.53□□□□□ -0.24
VRK1-206ENST00000557222 LTKP29376 864 aa13.53□□□□□ -0.24
VRK1-206ENST00000557222 DAPK1P53355 1430 aa13.53□□□□□ -0.24
VRK1-206ENST00000557222 PTPN23Q9H3S7 1636 aa13.53□□□□□ -0.24
VRK1-206ENST00000557222 ALKQ9UM73 1620 aa13.53□□□□□ -0.24
VRK1-206ENST00000557222 POTEJP0CG39 1038 aa13.52□□□□□ -0.25
VRK1-206ENST00000557222 ANKRD30AQ9BXX3 1397 aa13.52□□□□□ -0.25
VRK1-206ENST00000557222 FGD6Q6ZV73 1430 aa13.52□□□□□ -0.25
VRK1-206ENST00000557222 LMTK2Q8IWU2 1503 aa13.52□□□□□ -0.25
VRK1-206ENST00000557222 MED1Q15648 1581 aaPredicted RBP13.52□□□□□ -0.25
VRK1-206ENST00000557222 CROCC2H7BZ55 1655 aa13.51□□□□□ -0.25
VRK1-206ENST00000557222 TMEM2Q9UHN6 1383 aa13.51□□□□□ -0.25
VRK1-206ENST00000557222 STRCP1A6NGW2 1772 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms