RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 HECW2Q9P2P5 1572 aa8□□□□□ -1.13
SYNE2-225ENST00000557060 CEP152O94986 1710 aa8□□□□□ -1.13
SYNE2-225ENST00000557060 MLH3Q9UHC1 1453 aa8□□□□□ -1.13
SYNE2-225ENST00000557060 ABCA6Q8N139 1617 aa8□□□□□ -1.13
SYNE2-225ENST00000557060 MROH1Q8NDA8 1641 aa8□□□□□ -1.13
SYNE2-225ENST00000557060 PPRC1Q5VV67 1664 aaKnown RBP8□□□□□ -1.13
SYNE2-225ENST00000557060 SPHKAPQ2M3C7 1700 aa7.99□□□□□ -1.13
SYNE2-225ENST00000557060 FRMPD1Q5SYB0 1578 aa7.99□□□□□ -1.13
SYNE2-225ENST00000557060 PER1O15534 1290 aaPredicted RBP7.99□□□□□ -1.13
SYNE2-225ENST00000557060 PNISRQ8TF01 805 aaKnown RBP7.99□□□□□ -1.13
SYNE2-225ENST00000557060 TET3O43151 1660 aa7.99□□□□□ -1.13
SYNE2-225ENST00000557060 MYBBP1AQ9BQG0 1328 aaKnown RBP7.99□□□□□ -1.13
SYNE2-225ENST00000557060 NEO1Q92859 1461 aa7.99□□□□□ -1.13
SYNE2-225ENST00000557060 GPRASP1Q5JY77 1395 aa7.99□□□□□ -1.13
SYNE2-225ENST00000557060 EFCAB6Q5THR3 1501 aa7.99□□□□□ -1.13
SYNE2-225ENST00000557060 SLC12A5Q9H2X9 1139 aa7.98□□□□□ -1.13
SYNE2-225ENST00000557060 RALBP1Q15311 655 aa7.98□□□□□ -1.13
SYNE2-225ENST00000557060 NLRP13Q86W25 1043 aa7.97□□□□□ -1.13
SYNE2-225ENST00000557060 DEPDC5O75140 1603 aa7.97□□□□□ -1.13
SYNE2-225ENST00000557060 VGFO15240 615 aaPredicted RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 CENPJQ9HC77 1338 aaPredicted RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 SCAF11Q99590 1463 aaKnown RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 CEBPAP49715 358 aaPredicted RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 CDCA8Q53HL2 280 aa7.97□□□□□ -1.13
SYNE2-225ENST00000557060 CABP2Q9NPB3 220 aa7.97□□□□□ -1.13
SYNE2-225ENST00000557060 MINK1Q8N4C8 1332 aaPredicted RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 EIF3AQ14152 1382 aaKnown RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 COL17A1Q9UMD9 1497 aaPredicted RBP7.97□□□□□ -1.13
SYNE2-225ENST00000557060 RNF17Q9BXT8 1623 aaKnown RBP7.96□□□□□ -1.13
SYNE2-225ENST00000557060 ABCC3O15438 1527 aa7.96□□□□□ -1.13
SYNE2-225ENST00000557060 SRPK2P78362 688 aaKnown RBP7.96□□□□□ -1.13
SYNE2-225ENST00000557060 CFAP74Q9C0B2 1584 aa7.96□□□□□ -1.14
SYNE2-225ENST00000557060 ZBED9Q6R2W3 1325 aa7.96□□□□□ -1.14
SYNE2-225ENST00000557060 POGKQ9P215 609 aa7.96□□□□□ -1.14
SYNE2-225ENST00000557060 MADDQ8WXG6 1647 aa7.96□□□□□ -1.14
SYNE2-225ENST00000557060 DIP2CQ9Y2E4 1556 aa7.96□□□□□ -1.14
SYNE2-225ENST00000557060 CCDC146Q8IYE0 955 aa7.95□□□□□ -1.14
SYNE2-225ENST00000557060 VWDEQ8N2E2 1590 aa7.95□□□□□ -1.14
SYNE2-225ENST00000557060 EIF2AK4Q9P2K8 1649 aaKnown RBP7.95□□□□□ -1.14
SYNE2-225ENST00000557060 C14orf93Q9H972 538 aaKnown RBP7.95□□□□□ -1.14
SYNE2-225ENST00000557060 CDCA7LQ96GN5 454 aa7.94□□□□□ -1.14
SYNE2-225ENST00000557060 CARD14Q9BXL6 1004 aa7.94□□□□□ -1.14
SYNE2-225ENST00000557060 WDR43Q15061 677 aaKnown RBP eCLIP7.94□□□□□ -1.14
SYNE2-225ENST00000557060 ADAMTS8Q9UP79 889 aa7.94□□□□□ -1.14
SYNE2-225ENST00000557060 DIP2BQ9P265 1576 aa7.94□□□□□ -1.14
SYNE2-225ENST00000557060 MROH2AA6NES4 1674 aa7.94□□□□□ -1.14
SYNE2-225ENST00000557060 NUTM2FA1L443 756 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 B4GALNT3Q6L9W6 998 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 PRAM1Q96QH2 718 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 SLC52A1Q9NWF4 448 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 MAP3K4Q9Y6R4 1608 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 PPP2R1AP30153 589 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 NEUROD2Q15784 382 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 AMER1Q5JTC6 1135 aaPredicted RBP7.93□□□□□ -1.14
SYNE2-225ENST00000557060 PELP1Q8IZL8 1130 aaKnown RBP7.93□□□□□ -1.14
SYNE2-225ENST00000557060 STAC3Q96MF2 364 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 POLR1AO95602 1720 aaPredicted RBP7.93□□□□□ -1.14
SYNE2-225ENST00000557060 KIF1BO60333 1816 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 WAPLQ7Z5K2 1190 aa7.93□□□□□ -1.14
SYNE2-225ENST00000557060 BRD4O60885 1362 aaPredicted RBP7.92□□□□□ -1.14
SYNE2-225ENST00000557060 RICTORQ6R327 1708 aa7.92□□□□□ -1.14
SYNE2-225ENST00000557060 PARD3Q8TEW0 1356 aa7.92□□□□□ -1.14
SYNE2-225ENST00000557060 FOXD4L1Q9NU39 408 aa7.91□□□□□ -1.14
SYNE2-225ENST00000557060 MORC1Q86VD1 984 aa7.91□□□□□ -1.14
SYNE2-225ENST00000557060 SIGLEC1Q9BZZ2 1709 aa7.9□□□□□ -1.14
SYNE2-225ENST00000557060 PPM1GO15355 546 aaPredicted RBP7.9□□□□□ -1.14
SYNE2-225ENST00000557060 RTN4Q9NQC3 1192 aaKnown RBP7.9□□□□□ -1.14
SYNE2-225ENST00000557060 CAMSAP1Q5T5Y3 1602 aa7.9□□□□□ -1.14
SYNE2-225ENST00000557060 NUDCQ9Y266 331 aa7.9□□□□□ -1.14
SYNE2-225ENST00000557060 PIK3C2GO75747 1445 aa7.9□□□□□ -1.14
SYNE2-225ENST00000557060 SYNMO15061 1565 aa7.9□□□□□ -1.15
SYNE2-225ENST00000557060 TXNDC2Q86VQ3 553 aa7.9□□□□□ -1.15
SYNE2-225ENST00000557060 ERVK-7P63135 1459 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 RPGRIP1LQ68CZ1 1315 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 ADGRB3O60242 1522 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 LMTK2Q8IWU2 1503 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 PLIN1O60240 522 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 FBLN1P23142 703 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.89□□□□□ -1.15
SYNE2-225ENST00000557060 GGNBP2Q9H3C7 697 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 EVC2Q86UK5 1308 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 MYOM2P54296 1465 aa7.89□□□□□ -1.15
SYNE2-225ENST00000557060 RRP7AQ9Y3A4 280 aaKnown RBP7.89□□□□□ -1.15
SYNE2-225ENST00000557060 NSD3Q9BZ95 1437 aa7.88□□□□□ -1.15
SYNE2-225ENST00000557060 SLC26A8Q96RN1 970 aa7.88□□□□□ -1.15
SYNE2-225ENST00000557060 ZMYM3Q14202 1370 aa7.88□□□□□ -1.15
SYNE2-225ENST00000557060 NCKAP5LQ9HCH0 1330 aa7.88□□□□□ -1.15
SYNE2-225ENST00000557060 APAF1O14727 1248 aa7.88□□□□□ -1.15
SYNE2-225ENST00000557060 GLI2P10070 1586 aa7.87□□□□□ -1.15
SYNE2-225ENST00000557060 IQGAP1P46940 1657 aa7.87□□□□□ -1.15
SYNE2-225ENST00000557060 CABP1Q9NZU7 370 aa7.87□□□□□ -1.15
SYNE2-225ENST00000557060 SOX12O15370 315 aa7.86□□□□□ -1.15
SYNE2-225ENST00000557060 MTHFSP49914 203 aa7.86□□□□□ -1.15
SYNE2-225ENST00000557060 LRPPRCP42704 1394 aaKnown RBP7.86□□□□□ -1.15
SYNE2-225ENST00000557060 PLEKHG5O94827 1062 aa7.86□□□□□ -1.15
SYNE2-225ENST00000557060 CDK19Q9BWU1 502 aa7.86□□□□□ -1.15
SYNE2-225ENST00000557060 TSHZ2Q9NRE2 1034 aa7.86□□□□□ -1.15
SYNE2-225ENST00000557060 U2SURPO15042 1029 aaKnown RBP7.86□□□□□ -1.15
SYNE2-225ENST00000557060 RCAN3Q9UKA8 241 aa7.86□□□□□ -1.15
SYNE2-225ENST00000557060 RBM33Q96EV2 1170 aaKnown RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms