RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 FYCO1Q9BQS8 1478 aa12.08□□□□□ -0.48
ATXN3-219ENST00000553488 ATP7AQ04656 1500 aa12.07□□□□□ -0.48
ATXN3-219ENST00000553488 CEP170BQ9Y4F5 1589 aaPredicted RBP12.06□□□□□ -0.48
ATXN3-219ENST00000553488 CABP2Q9NPB3 220 aa12.06□□□□□ -0.48
ATXN3-219ENST00000553488 PLA2R1Q13018 1463 aa12.06□□□□□ -0.48
ATXN3-219ENST00000553488 MYT1LQ9UL68 1186 aa12.05□□□□□ -0.48
ATXN3-219ENST00000553488 TCOF1Q13428 1488 aaKnown RBP12.05□□□□□ -0.48
ATXN3-219ENST00000553488 GPATCH8Q9UKJ3 1502 aaKnown RBP12.05□□□□□ -0.48
ATXN3-219ENST00000553488 ADGBQ8N7X0 1667 aa12.04□□□□□ -0.48
ATXN3-219ENST00000553488 TAOK2Q9UL54 1235 aa12.04□□□□□ -0.48
ATXN3-219ENST00000553488 SEC24BO95487 1268 aa12.03□□□□□ -0.48
ATXN3-219ENST00000553488 PDCD7Q8N8D1 485 aaKnown RBP12.03□□□□□ -0.48
ATXN3-219ENST00000553488 OCEL1Q9H607 264 aa12.03□□□□□ -0.48
ATXN3-219ENST00000553488 ZMYM3Q14202 1370 aa12.03□□□□□ -0.48
ATXN3-219ENST00000553488 PTPRKQ15262 1439 aa12.03□□□□□ -0.48
ATXN3-219ENST00000553488 MKRN3Q13064 507 aaKnown RBP12.02□□□□□ -0.49
ATXN3-219ENST00000553488 ESF1Q9H501 851 aaKnown RBP12.02□□□□□ -0.49
ATXN3-219ENST00000553488 POLR1AO95602 1720 aaPredicted RBP12.02□□□□□ -0.49
ATXN3-219ENST00000553488 KIAA1107Q9UPP5 1409 aa12.02□□□□□ -0.49
ATXN3-219ENST00000553488 A2MP01023 1474 aa12.02□□□□□ -0.49
ATXN3-219ENST00000553488 GOLGA2Q08379 1002 aa12□□□□□ -0.49
ATXN3-219ENST00000553488 EFCAB3Q8N7B9 438 aa12□□□□□ -0.49
ATXN3-219ENST00000553488 OTUD5Q96G74 571 aa12□□□□□ -0.49
ATXN3-219ENST00000553488 BCL11BQ9C0K0 894 aaPredicted RBP12□□□□□ -0.49
ATXN3-219ENST00000553488 ZNF335Q9H4Z2 1342 aaPredicted RBP12□□□□□ -0.49
ATXN3-219ENST00000553488 PLEKHH2Q8IVE3 1493 aa12□□□□□ -0.49
ATXN3-219ENST00000553488 NEURL4Q96JN8 1562 aa12□□□□□ -0.49
ATXN3-219ENST00000553488 DNMT1P26358 1616 aaKnown RBP12□□□□□ -0.49
ATXN3-219ENST00000553488 PLCG2P16885 1265 aa11.99□□□□□ -0.49
ATXN3-219ENST00000553488 SPAG9O60271 1321 aaKnown RBP11.99□□□□□ -0.49
ATXN3-219ENST00000553488 TIAM1Q13009 1591 aa11.99□□□□□ -0.49
ATXN3-219ENST00000553488 NCKAP5LQ9HCH0 1330 aa11.98□□□□□ -0.49
ATXN3-219ENST00000553488 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.97□□□□□ -0.493e-6■■□□□ 13.5
ATXN3-219ENST00000553488 A2ML1A8K2U0 1454 aa11.96□□□□□ -0.49
ATXN3-219ENST00000553488 HNRNPMP52272 730 aaKnown RBP eCLIP11.96□□□□□ -0.49
ATXN3-219ENST00000553488 MBD5Q9P267 1494 aa11.95□□□□□ -0.5
ATXN3-219ENST00000553488 STK25O00506 426 aa11.95□□□□□ -0.5
ATXN3-219ENST00000553488 AMER1Q5JTC6 1135 aaPredicted RBP11.95□□□□□ -0.5
ATXN3-219ENST00000553488 ZNF777Q9ULD5 760 aaPredicted RBP11.95□□□□□ -0.5
ATXN3-219ENST00000553488 MED1Q15648 1581 aaPredicted RBP11.95□□□□□ -0.5
ATXN3-219ENST00000553488 FAM135AQ9P2D6 1515 aa11.95□□□□□ -0.5
ATXN3-219ENST00000553488 SOX12O15370 315 aa11.94□□□□□ -0.5
ATXN3-219ENST00000553488 STK24Q9Y6E0 443 aa11.94□□□□□ -0.5
ATXN3-219ENST00000553488 EHBP1L1Q8N3D4 1523 aa11.94□□□□□ -0.5
ATXN3-219ENST00000553488 UBAP1LF5GYI3 381 aa11.93□□□□□ -0.5
ATXN3-219ENST00000553488 RTN4Q9NQC3 1192 aaKnown RBP11.93□□□□□ -0.5
ATXN3-219ENST00000553488 ALKQ9UM73 1620 aa11.93□□□□□ -0.5
ATXN3-219ENST00000553488 CCNB3Q8WWL7 1395 aa11.92□□□□□ -0.5
ATXN3-219ENST00000553488 CPS1P31327 1500 aa11.92□□□□□ -0.5
ATXN3-219ENST00000553488 KDM5DQ9BY66 1539 aa11.92□□□□□ -0.5
ATXN3-219ENST00000553488 HS6ST3Q8IZP7 471 aa11.92□□□□□ -0.5
ATXN3-219ENST00000553488 VWDEQ8N2E2 1590 aa11.92□□□□□ -0.5
ATXN3-219ENST00000553488 PZPP20742 1482 aa11.91□□□□□ -0.5
ATXN3-219ENST00000553488 CFDP1Q9UEE9 299 aaPredicted RBP11.91□□□□□ -0.5
ATXN3-219ENST00000553488 RTEL1-TNFRSF6BF6WH68 1400 aa11.91□□□□□ -0.5
ATXN3-219ENST00000553488 DPY19L2Q6NUT2 758 aa11.9□□□□□ -0.5
ATXN3-219ENST00000553488 GGT6Q6P531 493 aa11.9□□□□□ -0.5
ATXN3-219ENST00000553488 MAMSTRQ6ZN01 415 aa11.9□□□□□ -0.5
ATXN3-219ENST00000553488 DEPDC5O75140 1603 aa11.89□□□□□ -0.51
ATXN3-219ENST00000553488 FBXO22Q8NEZ5 403 aa11.89□□□□□ -0.51
ATXN3-219ENST00000553488 MS4A4AQ96JQ5 239 aa11.89□□□□□ -0.51
ATXN3-219ENST00000553488 STRCP1A6NGW2 1772 aa11.89□□□□□ -0.51
ATXN3-219ENST00000553488 MTUS2Q5JR59 1369 aa11.89□□□□□ -0.51
ATXN3-219ENST00000553488 SHANK2Q9UPX8 1470 aa11.89□□□□□ -0.51
ATXN3-219ENST00000553488 ZNF644Q9H582 1327 aaPredicted RBP11.88□□□□□ -0.51
ATXN3-219ENST00000553488 CEP162Q5TB80 1403 aa11.88□□□□□ -0.51
ATXN3-219ENST00000553488 MFRPQ9BY79 579 aa11.88□□□□□ -0.51
ATXN3-219ENST00000553488 PHF8Q9UPP1 1060 aa11.88□□□□□ -0.51
ATXN3-219ENST00000553488 DHX29Q7Z478 1369 aaKnown RBP11.88□□□□□ -0.51
ATXN3-219ENST00000553488 TNRQ92752 1358 aa11.88□□□□□ -0.51
ATXN3-219ENST00000553488 CCDC141Q6ZP82 1450 aa11.88□□□□□ -0.51
ATXN3-219ENST00000553488 IQGAP1P46940 1657 aa11.87□□□□□ -0.51
ATXN3-219ENST00000553488 RNF17Q9BXT8 1623 aaKnown RBP11.87□□□□□ -0.51
ATXN3-219ENST00000553488 MED14O60244 1454 aa11.87□□□□□ -0.51
ATXN3-219ENST00000553488 CAMSAP2Q08AD1 1489 aa11.86□□□□□ -0.51
ATXN3-219ENST00000553488 ZC3H13Q5T200 1668 aaKnown RBP11.86□□□□□ -0.51
ATXN3-219ENST00000553488 SYNMO15061 1565 aa11.85□□□□□ -0.51
ATXN3-219ENST00000553488 ARHGEF5Q12774 1597 aa11.85□□□□□ -0.51
ATXN3-219ENST00000553488 NLRP1Q9C000 1473 aa11.85□□□□□ -0.51
ATXN3-219ENST00000553488 HSPA1LP34931 641 aa11.85□□□□□ -0.51
ATXN3-219ENST00000553488 UGGT1Q9NYU2 1555 aa11.84□□□□□ -0.51
ATXN3-219ENST00000553488 L3MBTL3Q96JM7 780 aaPredicted RBP11.84□□□□□ -0.51
ATXN3-219ENST00000553488 SCUBE2Q9NQ36 999 aa11.84□□□□□ -0.51
ATXN3-219ENST00000553488 MROH1Q8NDA8 1641 aa11.83□□□□□ -0.52
ATXN3-219ENST00000553488 CHGAP10645 457 aaKnown RBP11.83□□□□□ -0.52
ATXN3-219ENST00000553488 FBXO31Q5XUX0 539 aaPredicted RBP11.83□□□□□ -0.52
ATXN3-219ENST00000553488 TMEM121BQ9BXQ6 578 aaPredicted RBP11.83□□□□□ -0.52
ATXN3-219ENST00000553488 NCOA2Q15596 1464 aa11.83□□□□□ -0.52
ATXN3-219ENST00000553488 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.82□□□□□ -0.52
ATXN3-219ENST00000553488 ABCC3O15438 1527 aa11.82□□□□□ -0.52
ATXN3-219ENST00000553488 NLRP6P59044 892 aa11.82□□□□□ -0.52
ATXN3-219ENST00000553488 NPHP4O75161 1426 aaPredicted RBP11.82□□□□□ -0.52
ATXN3-219ENST00000553488 MIA2Q96PC5 1412 aa11.82□□□□□ -0.52
ATXN3-219ENST00000553488 MAST1Q9Y2H9 1570 aa11.82□□□□□ -0.52
ATXN3-219ENST00000553488 EIF2AK4Q9P2K8 1649 aaKnown RBP11.82□□□□□ -0.52
ATXN3-219ENST00000553488 CEP152O94986 1710 aa11.81□□□□□ -0.52
ATXN3-219ENST00000553488 UBR1Q8IWV7 1749 aa11.81□□□□□ -0.52
ATXN3-219ENST00000553488 XIRP1Q702N8 1843 aaKnown RBP11.81□□□□□ -0.52
ATXN3-219ENST00000553488 KIF3BO15066 747 aa11.8□□□□□ -0.52
ATXN3-219ENST00000553488 LRRC7Q96NW7 1537 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms