RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CLEC11AQ9Y240 323 aa10.75□□□□□ -0.69
LIMA1-204ENST00000549064 MED14O60244 1454 aa10.74□□□□□ -0.69
LIMA1-204ENST00000549064 CCDC18Q5T9S5 1454 aa10.74□□□□□ -0.69
LIMA1-204ENST00000549064 XIRP1Q702N8 1843 aaKnown RBP10.74□□□□□ -0.69
LIMA1-204ENST00000549064 UGGT1Q9NYU2 1555 aa10.73□□□□□ -0.69
LIMA1-204ENST00000549064 PZPP20742 1482 aa10.73□□□□□ -0.69
LIMA1-204ENST00000549064 MNX1P50219 401 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-204ENST00000549064 CASKIN1Q8WXD9 1431 aa10.72□□□□□ -0.69
LIMA1-204ENST00000549064 KIAA1107Q9UPP5 1409 aa10.72□□□□□ -0.69
LIMA1-204ENST00000549064 ZC3H13Q5T200 1668 aaKnown RBP10.72□□□□□ -0.69
LIMA1-204ENST00000549064 RASEFQ8IZ41 740 aa10.71□□□□□ -0.69
LIMA1-204ENST00000549064 KDM5DQ9BY66 1539 aa10.7□□□□□ -0.7
LIMA1-204ENST00000549064 FAM135AQ9P2D6 1515 aa10.7□□□□□ -0.7
LIMA1-204ENST00000549064 PLEKHH2Q8IVE3 1493 aa10.7□□□□□ -0.7
LIMA1-204ENST00000549064 PRR29P0C7W0 189 aa10.7□□□□□ -0.7
LIMA1-204ENST00000549064 THEMISQ8N1K5 641 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-204ENST00000549064 BCL11BQ9C0K0 894 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-204ENST00000549064 STK24Q9Y6E0 443 aa10.7□□□□□ -0.7
LIMA1-204ENST00000549064 NLRP1Q9C000 1473 aa10.69□□□□□ -0.7
LIMA1-204ENST00000549064 MIA2Q96PC5 1412 aa10.69□□□□□ -0.7
LIMA1-204ENST00000549064 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-204ENST00000549064 ZFP91Q96JP5 570 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-204ENST00000549064 CFDP1Q9UEE9 299 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-204ENST00000549064 KIF3BO15066 747 aa10.68□□□□□ -0.7
LIMA1-204ENST00000549064 CHRM1P11229 460 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-204ENST00000549064 DHX29Q7Z478 1369 aaKnown RBP10.67□□□□□ -0.7
LIMA1-204ENST00000549064 ZNF644Q9H582 1327 aaPredicted RBP10.67□□□□□ -0.7
LIMA1-204ENST00000549064 AKT1S1Q96B36 256 aa10.67□□□□□ -0.7
LIMA1-204ENST00000549064 PYGBP11216 843 aa10.66□□□□□ -0.7
LIMA1-204ENST00000549064 MBD5Q9P267 1494 aa10.66□□□□□ -0.7
LIMA1-204ENST00000549064 CFAP65Q6ZU64 1925 aaKnown RBP10.66□□□□□ -0.7
LIMA1-204ENST00000549064 ROBO1Q9Y6N7 1651 aa10.66□□□□□ -0.7
LIMA1-204ENST00000549064 CCNB3Q8WWL7 1395 aa10.65□□□□□ -0.7
LIMA1-204ENST00000549064 WASHC2CQ9Y4E1 1318 aa10.65□□□□□ -0.7
LIMA1-204ENST00000549064 FYCO1Q9BQS8 1478 aa10.65□□□□□ -0.7
LIMA1-204ENST00000549064 SRCAPQ6ZRS2 3230 aa10.65□□□□□ -0.71
LIMA1-204ENST00000549064 UBR1Q8IWV7 1749 aa10.64□□□□□ -0.71
LIMA1-204ENST00000549064 SGIP1Q9BQI5 828 aa10.64□□□□□ -0.71
LIMA1-204ENST00000549064 RTEL1-TNFRSF6BF6WH68 1400 aa10.64□□□□□ -0.71
LIMA1-204ENST00000549064 FAM135BQ49AJ0 1406 aa10.64□□□□□ -0.71
LIMA1-204ENST00000549064 TIAM1Q13009 1591 aa10.64□□□□□ -0.71
LIMA1-204ENST00000549064 UPF1Q92900 1129 aaKnown RBP eCLIP10.62□□□□□ -0.71
LIMA1-204ENST00000549064 RBM42Q9BTD8 480 aaKnown RBP10.62□□□□□ -0.71
LIMA1-204ENST00000549064 SCAF11Q99590 1463 aaKnown RBP10.61□□□□□ -0.71
LIMA1-204ENST00000549064 REM2Q8IYK8 340 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-204ENST00000549064 ERVK-7P63135 1459 aa10.61□□□□□ -0.71
LIMA1-204ENST00000549064 LTKP29376 864 aa10.6□□□□□ -0.71
LIMA1-204ENST00000549064 PHLPP1O60346 1717 aa10.6□□□□□ -0.71
LIMA1-204ENST00000549064 CEP152O94986 1710 aa10.6□□□□□ -0.71
LIMA1-204ENST00000549064 NCOA2Q15596 1464 aa10.6□□□□□ -0.71
LIMA1-204ENST00000549064 ABCC3O15438 1527 aa10.59□□□□□ -0.71
LIMA1-204ENST00000549064 RBM33Q96EV2 1170 aaKnown RBP10.59□□□□□ -0.71
LIMA1-204ENST00000549064 RYDENQ9NUL5 291 aaKnown RBP10.59□□□□□ -0.71
LIMA1-204ENST00000549064 MAP3K1Q13233 1512 aa10.58□□□□□ -0.72
LIMA1-204ENST00000549064 CCDC141Q6ZP82 1450 aa10.58□□□□□ -0.72
LIMA1-204ENST00000549064 ARHGAP23Q9P227 1491 aa10.58□□□□□ -0.72
LIMA1-204ENST00000549064 TMEM94Q12767 1356 aa10.58□□□□□ -0.72
LIMA1-204ENST00000549064 MTUS2Q5JR59 1369 aa10.58□□□□□ -0.72
LIMA1-204ENST00000549064 TRIM52Q96A61 297 aa10.58□□□□□ -0.72
LIMA1-204ENST00000549064 TXNDC2Q86VQ3 553 aa10.57□□□□□ -0.72
LIMA1-204ENST00000549064 LRP6O75581 1613 aa10.57□□□□□ -0.72
LIMA1-204ENST00000549064 SLIT1O75093 1534 aa10.57□□□□□ -0.72
LIMA1-204ENST00000549064 MROH1Q8NDA8 1641 aa10.56□□□□□ -0.72
LIMA1-204ENST00000549064 CAMSAP2Q08AD1 1489 aa10.55□□□□□ -0.72
LIMA1-204ENST00000549064 TIMELESSQ9UNS1 1208 aa10.55□□□□□ -0.72
LIMA1-204ENST00000549064 PIK3C2BO00750 1634 aa10.55□□□□□ -0.72
LIMA1-204ENST00000549064 COL16A1Q07092 1604 aaPredicted RBP10.55□□□□□ -0.72
LIMA1-204ENST00000549064 JCADQ9P266 1359 aa10.54□□□□□ -0.72
LIMA1-204ENST00000549064 TULP1O00294 542 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-204ENST00000549064 LRRC9Q6ZRR7 1453 aa10.54□□□□□ -0.72
LIMA1-204ENST00000549064 EHBP1L1Q8N3D4 1523 aa10.53□□□□□ -0.72
LIMA1-204ENST00000549064 PROSER2Q86WR7 435 aaPredicted RBP10.53□□□□□ -0.72
LIMA1-204ENST00000549064 EIF2AK4Q9P2K8 1649 aaKnown RBP10.51□□□□□ -0.73
LIMA1-204ENST00000549064 CADPS2Q86UW7 1296 aa10.51□□□□□ -0.73
LIMA1-204ENST00000549064 GTF3C3Q9Y5Q9 886 aa10.51□□□□□ -0.73
LIMA1-204ENST00000549064 EID1Q9Y6B2 187 aa10.51□□□□□ -0.73
LIMA1-204ENST00000549064 PRDM15P57071 1507 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-204ENST00000549064 ARHGEF5Q12774 1597 aa10.51□□□□□ -0.73
LIMA1-204ENST00000549064 CEP162Q5TB80 1403 aa10.5□□□□□ -0.73
LIMA1-204ENST00000549064 PITPNM1O00562 1244 aa10.5□□□□□ -0.73
LIMA1-204ENST00000549064 KCNA6P17658 529 aa10.5□□□□□ -0.73
LIMA1-204ENST00000549064 MEX3CQ5U5Q3 659 aaKnown RBP10.5□□□□□ -0.73
LIMA1-204ENST00000549064 SLC26A8Q96RN1 970 aa10.5□□□□□ -0.73
LIMA1-204ENST00000549064 NWD1Q149M9 1564 aa10.5□□□□□ -0.73
LIMA1-204ENST00000549064 TMEM2Q9UHN6 1383 aa10.5□□□□□ -0.73
LIMA1-204ENST00000549064 ZNF772Q68DY9 489 aaPredicted RBP10.49□□□□□ -0.73
LIMA1-204ENST00000549064 SLAIN2Q9P270 581 aa10.49□□□□□ -0.73
LIMA1-204ENST00000549064 TET3O43151 1660 aa10.49□□□□□ -0.73
LIMA1-204ENST00000549064 MSH6P52701 1360 aa10.49□□□□□ -0.73
LIMA1-204ENST00000549064 NKTRP30414 1462 aaKnown RBP10.49□□□□□ -0.73
LIMA1-204ENST00000549064 KDM5AP29375 1690 aaKnown RBP10.48□□□□□ -0.73
LIMA1-204ENST00000549064 SHPRHQ149N8 1683 aa10.48□□□□□ -0.73
LIMA1-204ENST00000549064 KCNV2Q8TDN2 545 aa10.48□□□□□ -0.73
LIMA1-204ENST00000549064 TSPYL2Q9H2G4 693 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-204ENST00000549064 TSPY4P0CV99 314 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 TSPY10P0CW01 314 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 RXRBP28702 533 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 RSPH4AQ5TD94 716 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 WDR70Q9NW82 654 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 SPATA31A6Q5VVP1 1343 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms