RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 UGGT2Q9NYU1 1516 aa19.83■□□□□ 0.77
CUX1-211ENST00000546411 SLC4A10Q6U841 1118 aa19.83■□□□□ 0.77
CUX1-211ENST00000546411 CASC1Q6TDU7 716 aa19.83■□□□□ 0.76
CUX1-211ENST00000546411 CHMP4BQ9H444 224 aaKnown RBP19.83■□□□□ 0.76
CUX1-211ENST00000546411 RIPK4P57078 832 aa19.83■□□□□ 0.76
CUX1-211ENST00000546411 FAM69CQ0P6D2 419 aa19.83■□□□□ 0.76
CUX1-211ENST00000546411 FOXD4L1Q9NU39 408 aa19.82■□□□□ 0.76
CUX1-211ENST00000546411 ERBINQ96RT1 1412 aa19.82■□□□□ 0.76
CUX1-211ENST00000546411 RUNDC1Q96C34 613 aa19.82■□□□□ 0.76
CUX1-211ENST00000546411 NUP153P49790 1475 aaKnown RBP19.82■□□□□ 0.76
CUX1-211ENST00000546411 ZKSCAN2Q63HK3 967 aa19.81■□□□□ 0.76
CUX1-211ENST00000546411 NGDNQ8NEJ9 315 aaKnown RBP19.81■□□□□ 0.76
CUX1-211ENST00000546411 SMG6Q86US8 1419 aaKnown RBP19.8■□□□□ 0.76
CUX1-211ENST00000546411 OS9Q13438 667 aaPredicted RBP19.8■□□□□ 0.76
CUX1-211ENST00000546411 CCDC141Q6ZP82 1450 aa19.79■□□□□ 0.76
CUX1-211ENST00000546411 TRIM44Q96DX7 344 aaPredicted RBP19.79■□□□□ 0.76
CUX1-211ENST00000546411 MSH5O43196 834 aa19.79■□□□□ 0.76
CUX1-211ENST00000546411 DIAPH1O60610 1272 aaKnown RBP19.79■□□□□ 0.76
CUX1-211ENST00000546411 C20orf194Q5TEA3 1177 aa19.79■□□□□ 0.76
CUX1-211ENST00000546411 STAC3Q96MF2 364 aa19.78■□□□□ 0.76
CUX1-211ENST00000546411 PRKCSHP14314 528 aaPredicted RBP19.78■□□□□ 0.76
CUX1-211ENST00000546411 PLEKHH2Q8IVE3 1493 aa19.77■□□□□ 0.76
CUX1-211ENST00000546411 HAP1P54257 671 aaPredicted RBP19.77■□□□□ 0.76
CUX1-211ENST00000546411 CALD1Q05682 793 aaKnown RBP19.77■□□□□ 0.75
CUX1-211ENST00000546411 TSR2Q969E8 191 aaKnown RBP19.76■□□□□ 0.75
CUX1-211ENST00000546411 ANKRD45Q5TZF3 282 aa19.75■□□□□ 0.75
CUX1-211ENST00000546411 DZIP1LQ8IYY4 767 aaKnown RBP19.75■□□□□ 0.75
CUX1-211ENST00000546411 COG3Q96JB2 828 aa19.75■□□□□ 0.75
CUX1-211ENST00000546411 AMPHP49418 695 aa19.74■□□□□ 0.75
CUX1-211ENST00000546411 PRAM1Q96QH2 718 aa19.74■□□□□ 0.75
CUX1-211ENST00000546411 ATP10BO94823 1461 aa19.73■□□□□ 0.75
CUX1-211ENST00000546411 ADGRF5Q8IZF2 1346 aa19.72■□□□□ 0.75
CUX1-211ENST00000546411 TAOK2Q9UL54 1235 aa19.72■□□□□ 0.75
CUX1-211ENST00000546411 DISP3Q9P2K9 1392 aa19.71■□□□□ 0.75
CUX1-211ENST00000546411 NECTIN2Q92692 538 aa19.7■□□□□ 0.74
CUX1-211ENST00000546411 LNPKQ9C0E8 428 aa19.7■□□□□ 0.74
CUX1-211ENST00000546411 EID1Q9Y6B2 187 aa19.69■□□□□ 0.74
CUX1-211ENST00000546411 EXOSC9Q06265 439 aaKnown RBP19.68■□□□□ 0.74
CUX1-211ENST00000546411 CTTNBP2Q8WZ74 1663 aa19.68■□□□□ 0.74
CUX1-211ENST00000546411 STK31Q9BXU1 1019 aa19.68■□□□□ 0.74
CUX1-211ENST00000546411 CFAP43Q8NDM7 1665 aa19.67■□□□□ 0.74
CUX1-211ENST00000546411 KIF14Q15058 1648 aa19.67■□□□□ 0.74
CUX1-211ENST00000546411 KCNJ4P48050 445 aa19.67■□□□□ 0.74
CUX1-211ENST00000546411 BACH2Q9BYV9 841 aa19.67■□□□□ 0.74
CUX1-211ENST00000546411 CABP1Q9NZU7 370 aa19.67■□□□□ 0.74
CUX1-211ENST00000546411 NOL8Q76FK4 1167 aaKnown RBP19.66■□□□□ 0.74
CUX1-211ENST00000546411 PLCB2Q00722 1185 aa19.65■□□□□ 0.74
CUX1-211ENST00000546411 NUTM2GQ5VZR2 741 aa19.64■□□□□ 0.73
CUX1-211ENST00000546411 PRKAR2BP31323 418 aa19.64■□□□□ 0.73
CUX1-211ENST00000546411 TXNDC2Q86VQ3 553 aa19.64■□□□□ 0.73
CUX1-211ENST00000546411 NGEFQ8N5V2 710 aa19.64■□□□□ 0.73
CUX1-211ENST00000546411 DDX19BQ9UMR2 479 aa19.64■□□□□ 0.73
CUX1-211ENST00000546411 RAPGEF6Q8TEU7 1601 aa19.63■□□□□ 0.73
CUX1-211ENST00000546411 LMOD3Q0VAK6 560 aa19.63■□□□□ 0.73
CUX1-211ENST00000546411 TRIM6-TRIM34B2RNG4 842 aa19.62■□□□□ 0.73
CUX1-211ENST00000546411 SLFN5Q08AF3 891 aa19.62■□□□□ 0.73
CUX1-211ENST00000546411 WWC1Q8IX03 1113 aa19.62■□□□□ 0.73
CUX1-211ENST00000546411 MAGI3Q5TCQ9 1506 aa19.61■□□□□ 0.73
CUX1-211ENST00000546411 TCOF1Q13428 1488 aaKnown RBP19.61■□□□□ 0.73
CUX1-211ENST00000546411 WDR62O43379 1518 aa19.6■□□□□ 0.73
CUX1-211ENST00000546411 PTMAP06454 111 aaKnown RBP19.6■□□□□ 0.73
CUX1-211ENST00000546411 FOXD4L5Q5VV16 416 aaPredicted RBP19.6■□□□□ 0.73
CUX1-211ENST00000546411 FOXD4L4Q8WXT5 416 aaPredicted RBP19.6■□□□□ 0.73
CUX1-211ENST00000546411 CDK19Q9BWU1 502 aa19.59■□□□□ 0.73
CUX1-211ENST00000546411 NAP1L5Q96NT1 182 aaPredicted RBP19.59■□□□□ 0.73
CUX1-211ENST00000546411 C1orf115Q9H7X2 142 aa19.59■□□□□ 0.73
CUX1-211ENST00000546411 PDZRN3Q9UPQ7 1066 aa19.59■□□□□ 0.73
CUX1-211ENST00000546411 NSD3Q9BZ95 1437 aa19.58■□□□□ 0.73
CUX1-211ENST00000546411 NFKBIBQ15653 356 aa19.58■□□□□ 0.73
CUX1-211ENST00000546411 GSE1Q14687 1217 aa19.57■□□□□ 0.72
CUX1-211ENST00000546411 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.57■□□□□ 0.72
CUX1-211ENST00000546411 TESK2Q96S53 571 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 USP35Q9P2H5 1018 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 NAP1L2Q9ULW6 460 aaPredicted RBP19.56■□□□□ 0.72
CUX1-211ENST00000546411 ZNF330Q9Y3S2 320 aaPredicted RBP19.56■□□□□ 0.72
CUX1-211ENST00000546411 KIF21AQ7Z4S6 1674 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 DISP1Q96F81 1524 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 ADAMTS12P58397 1594 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 CSB-PGBD3P0DP91 1061 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 DUSP27Q5VZP5 1158 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 THUMPD2Q9BTF0 503 aaKnown RBP19.56■□□□□ 0.72
CUX1-211ENST00000546411 FGD1P98174 961 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 WAPLQ7Z5K2 1190 aa19.56■□□□□ 0.72
CUX1-211ENST00000546411 PDE3AQ14432 1141 aa19.55■□□□□ 0.72
CUX1-211ENST00000546411 FBXO31Q5XUX0 539 aaPredicted RBP19.55■□□□□ 0.72
CUX1-211ENST00000546411 IDI1Q13907 227 aa19.55■□□□□ 0.72
CUX1-211ENST00000546411 KIAA0556O60303 1618 aa19.54■□□□□ 0.72
CUX1-211ENST00000546411 PZPP20742 1482 aa19.54■□□□□ 0.72
CUX1-211ENST00000546411 HMMRO75330 724 aa19.54■□□□□ 0.72
CUX1-211ENST00000546411 EIF2S2P20042 333 aaKnown RBP19.54■□□□□ 0.72
CUX1-211ENST00000546411 NOB1Q9ULX3 412 aaKnown RBP19.54■□□□□ 0.72
CUX1-211ENST00000546411 GBP4Q96PP9 640 aa19.54■□□□□ 0.72
CUX1-211ENST00000546411 FBLN1P23142 703 aa19.53■□□□□ 0.72
CUX1-211ENST00000546411 FOXD4L6Q3SYB3 417 aaPredicted RBP19.53■□□□□ 0.72
CUX1-211ENST00000546411 FOXD4L3Q6VB84 417 aaPredicted RBP19.53■□□□□ 0.72
CUX1-211ENST00000546411 RRS1Q15050 365 aaKnown RBP19.52■□□□□ 0.72
CUX1-211ENST00000546411 L1TD1Q5T7N2 865 aaKnown RBP19.52■□□□□ 0.72
CUX1-211ENST00000546411 KIF16BQ96L93 1317 aa19.52■□□□□ 0.72
CUX1-211ENST00000546411 MCCP23508 829 aa19.52■□□□□ 0.72
CUX1-211ENST00000546411 RILPL2Q969X0 211 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms