RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 ABCC1P33527 1531 aa11.5□□□□□ -0.57
TDP1-204ENST00000545686 CENPQQ7L2Z9 268 aaPredicted RBP11.49□□□□□ -0.57
TDP1-204ENST00000545686 EIF3AQ14152 1382 aaKnown RBP11.49□□□□□ -0.57
TDP1-204ENST00000545686 NEFMP07197 916 aa11.49□□□□□ -0.57
TDP1-204ENST00000545686 TET3O43151 1660 aa11.49□□□□□ -0.57
TDP1-204ENST00000545686 STAC3Q96MF2 364 aa11.48□□□□□ -0.57
TDP1-204ENST00000545686 ZNF521Q96K83 1311 aa11.48□□□□□ -0.57
TDP1-204ENST00000545686 SCAF11Q99590 1463 aaKnown RBP11.48□□□□□ -0.57
TDP1-204ENST00000545686 CDCA8Q53HL2 280 aa11.48□□□□□ -0.57
TDP1-204ENST00000545686 PLIN1O60240 522 aa11.47□□□□□ -0.57
TDP1-204ENST00000545686 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.47□□□□□ -0.57
TDP1-204ENST00000545686 PLEKHH1Q9ULM0 1364 aa11.46□□□□□ -0.57
TDP1-204ENST00000545686 CLTCL1P53675 1640 aa11.46□□□□□ -0.57
TDP1-204ENST00000545686 PPP2R1AP30153 589 aa11.46□□□□□ -0.58
TDP1-204ENST00000545686 WDR43Q15061 677 aaKnown RBP eCLIP11.46□□□□□ -0.58
TDP1-204ENST00000545686 DUSP27Q5VZP5 1158 aa11.46□□□□□ -0.58
TDP1-204ENST00000545686 ADAMTS8Q9UP79 889 aa11.46□□□□□ -0.58
TDP1-204ENST00000545686 ARAP3Q8WWN8 1544 aa11.45□□□□□ -0.58
TDP1-204ENST00000545686 KNSTRNQ9Y448 316 aa11.45□□□□□ -0.58
TDP1-204ENST00000545686 LAS1LQ9Y4W2 734 aaKnown RBP11.45□□□□□ -0.58
TDP1-204ENST00000545686 ZCCHC11Q5TAX3 1644 aaKnown RBP11.45□□□□□ -0.58
TDP1-204ENST00000545686 AMER1Q5JTC6 1135 aaPredicted RBP11.45□□□□□ -0.58
TDP1-204ENST00000545686 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.45□□□□□ -0.58
TDP1-204ENST00000545686 PTPRTO14522 1441 aa11.44□□□□□ -0.58
TDP1-204ENST00000545686 IFT172Q9UG01 1749 aa11.44□□□□□ -0.58
TDP1-204ENST00000545686 GOLGA2Q08379 1002 aa11.44□□□□□ -0.58
TDP1-204ENST00000545686 PLCH2O75038 1416 aa11.44□□□□□ -0.58
TDP1-204ENST00000545686 MYO3AQ8NEV4 1616 aa11.43□□□□□ -0.58
TDP1-204ENST00000545686 FAM161AQ3B820 660 aa11.43□□□□□ -0.58
TDP1-204ENST00000545686 NKTRP30414 1462 aaKnown RBP11.43□□□□□ -0.58
TDP1-204ENST00000545686 ZFYVE16Q7Z3T8 1539 aa11.43□□□□□ -0.58
TDP1-204ENST00000545686 KIF1BO60333 1816 aa11.43□□□□□ -0.58
TDP1-204ENST00000545686 RTEL1-TNFRSF6BF6WH68 1400 aa11.43□□□□□ -0.58
TDP1-204ENST00000545686 C20orf194Q5TEA3 1177 aa11.43□□□□□ -0.58
TDP1-204ENST00000545686 VWDEQ8N2E2 1590 aa11.42□□□□□ -0.58
TDP1-204ENST00000545686 TRMT2AQ8IZ69 625 aaKnown RBP11.42□□□□□ -0.58
TDP1-204ENST00000545686 NGEFQ8N5V2 710 aa11.42□□□□□ -0.58
TDP1-204ENST00000545686 NINLQ9Y2I6 1382 aa11.42□□□□□ -0.58
TDP1-204ENST00000545686 MAP3K4Q9Y6R4 1608 aa11.41□□□□□ -0.58
TDP1-204ENST00000545686 SLC24A1O60721 1099 aa11.41□□□□□ -0.58
TDP1-204ENST00000545686 SLFN5Q08AF3 891 aa11.41□□□□□ -0.58
TDP1-204ENST00000545686 MYOM2P54296 1465 aa11.4□□□□□ -0.58
TDP1-204ENST00000545686 ABCA6Q8N139 1617 aa11.4□□□□□ -0.58
TDP1-204ENST00000545686 UHRF1BP1LA0JNW5 1464 aa11.4□□□□□ -0.58
TDP1-204ENST00000545686 INO80Q9ULG1 1556 aaPredicted RBP11.4□□□□□ -0.58
TDP1-204ENST00000545686 C8orf34Q49A92 452 aa11.4□□□□□ -0.59
TDP1-204ENST00000545686 DAXXQ9UER7 740 aaPredicted RBP11.39□□□□□ -0.59
TDP1-204ENST00000545686 ZC3H13Q5T200 1668 aaKnown RBP11.38□□□□□ -0.59
TDP1-204ENST00000545686 EFCAB2Q5VUJ9 269 aa11.38□□□□□ -0.59
TDP1-204ENST00000545686 SHPRHQ149N8 1683 aa11.38□□□□□ -0.59
TDP1-204ENST00000545686 NFKBIBQ15653 356 aa11.37□□□□□ -0.59
TDP1-204ENST00000545686 TRAPPC8Q9Y2L5 1435 aa11.37□□□□□ -0.59
TDP1-204ENST00000545686 GSE1Q14687 1217 aa11.37□□□□□ -0.59
TDP1-204ENST00000545686 SKAP1Q86WV1 359 aa11.37□□□□□ -0.59
TDP1-204ENST00000545686 E9PSI1 815 aa11.36□□□□□ -0.59
TDP1-204ENST00000545686 ERVK-7P63135 1459 aa11.36□□□□□ -0.59
TDP1-204ENST00000545686 ERCC6L2Q5T890 1561 aa11.36□□□□□ -0.59
TDP1-204ENST00000545686 USP32Q8NFA0 1604 aa11.36□□□□□ -0.59
TDP1-204ENST00000545686 ABCA9Q8IUA7 1624 aa11.36□□□□□ -0.59
TDP1-204ENST00000545686 SBNO2Q9Y2G9 1366 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 ATP7AQ04656 1500 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 SETBP1Q9Y6X0 1596 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 IL27Q8NEV9 243 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 CGNL1Q0VF96 1302 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 MROH1Q8NDA8 1641 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 ZMYM3Q14202 1370 aa11.35□□□□□ -0.59
TDP1-204ENST00000545686 MROH2AA6NES4 1674 aa11.34□□□□□ -0.59
TDP1-204ENST00000545686 KANK1Q14678 1352 aa11.34□□□□□ -0.59
TDP1-204ENST00000545686 PDE3AQ14432 1141 aa11.34□□□□□ -0.59
TDP1-204ENST00000545686 NRXN1Q9ULB1 1477 aa11.33□□□□□ -0.6
TDP1-204ENST00000545686 SPAG9O60271 1321 aaKnown RBP11.33□□□□□ -0.6
TDP1-204ENST00000545686 POLR3AO14802 1390 aaPredicted RBP11.33□□□□□ -0.6
TDP1-204ENST00000545686 EFCAB6Q5THR3 1501 aa11.33□□□□□ -0.6
TDP1-204ENST00000545686 MAPK8IP3Q9UPT6 1336 aa11.33□□□□□ -0.6
TDP1-204ENST00000545686 AAMPQ13685 434 aa11.32□□□□□ -0.6
TDP1-204ENST00000545686 QRICH2Q9H0J4 1663 aa11.32□□□□□ -0.6
TDP1-204ENST00000545686 PPLO60437 1756 aa11.31□□□□□ -0.6
TDP1-204ENST00000545686 APAF1O14727 1248 aa11.31□□□□□ -0.6
TDP1-204ENST00000545686 IQSEC2Q5JU85 1478 aa11.31□□□□□ -0.6
TDP1-204ENST00000545686 CCDC146Q8IYE0 955 aa11.3□□□□□ -0.6
TDP1-204ENST00000545686 RGS3P49796 1198 aa11.3□□□□□ -0.6
TDP1-204ENST00000545686 PPRC1Q5VV67 1664 aaKnown RBP11.29□□□□□ -0.6
TDP1-204ENST00000545686 LMTK2Q8IWU2 1503 aa11.29□□□□□ -0.6
TDP1-204ENST00000545686 CENPJQ9HC77 1338 aaPredicted RBP11.29□□□□□ -0.6
TDP1-204ENST00000545686 SPINK5Q9NQ38 1064 aaPredicted RBP11.29□□□□□ -0.6
TDP1-204ENST00000545686 ADGRB3O60242 1522 aa11.29□□□□□ -0.6
TDP1-204ENST00000545686 NLRP1Q9C000 1473 aa11.29□□□□□ -0.6
TDP1-204ENST00000545686 SLC4A3P48751 1232 aa11.29□□□□□ -0.6
TDP1-204ENST00000545686 BCAR3O75815 825 aa11.28□□□□□ -0.6
TDP1-204ENST00000545686 CLUAP1Q96AJ1 413 aa11.28□□□□□ -0.6
TDP1-204ENST00000545686 FRAT1Q92837 279 aaPredicted RBP11.28□□□□□ -0.6
TDP1-204ENST00000545686 FANCAO15360 1455 aa11.27□□□□□ -0.61
TDP1-204ENST00000545686 UGGT1Q9NYU2 1555 aa11.27□□□□□ -0.61
TDP1-204ENST00000545686 USP19O94966 1318 aa11.27□□□□□ -0.61
TDP1-204ENST00000545686 BECN1Q14457 450 aa11.26□□□□□ -0.61
TDP1-204ENST00000545686 NCBP3Q53F19 620 aaKnown RBP11.26□□□□□ -0.61
TDP1-204ENST00000545686 ADGRL1O94910 1474 aa11.26□□□□□ -0.61
TDP1-204ENST00000545686 WWC1Q8IX03 1113 aa11.26□□□□□ -0.61
TDP1-204ENST00000545686 CARD14Q9BXL6 1004 aa11.26□□□□□ -0.61
TDP1-204ENST00000545686 ADGRB2O60241 1585 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms