RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	UBR1	Q8IWV7	1749 aa		13.9	□□□□□ -0.18
YBX3-215	ENST00000544504	IQGAP3	Q86VI3	1631 aa		13.9	□□□□□ -0.19
YBX3-215	ENST00000544504	PRDM15	P57071	1507 aa	Predicted RBP	13.9	□□□□□ -0.19
YBX3-215	ENST00000544504	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
YBX3-215	ENST00000544504	XIRP1	Q702N8	1843 aa	Known RBP	13.89	□□□□□ -0.19
YBX3-215	ENST00000544504	SETD1A	O15047	1707 aa	Known RBP	13.89	□□□□□ -0.19
YBX3-215	ENST00000544504	ROBO1	Q9Y6N7	1651 aa		13.88	□□□□□ -0.19
YBX3-215	ENST00000544504	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.88	□□□□□ -0.19	4e-9	■□□□□ 10.2
YBX3-215	ENST00000544504	JCAD	Q9P266	1359 aa		13.87	□□□□□ -0.19
YBX3-215	ENST00000544504	KCNA6	P17658	529 aa		13.87	□□□□□ -0.19
YBX3-215	ENST00000544504	PROSER2	Q86WR7	435 aa	Predicted RBP	13.85	□□□□□ -0.19
YBX3-215	ENST00000544504	MROH1	Q8NDA8	1641 aa		13.85	□□□□□ -0.19
YBX3-215	ENST00000544504	LMTK2	Q8IWU2	1503 aa		13.85	□□□□□ -0.19
YBX3-215	ENST00000544504	TMEM2	Q9UHN6	1383 aa		13.84	□□□□□ -0.19
YBX3-215	ENST00000544504	ZNF772	Q68DY9	489 aa	Predicted RBP	13.84	□□□□□ -0.19
YBX3-215	ENST00000544504	TET3	O43151	1660 aa		13.84	□□□□□ -0.19
YBX3-215	ENST00000544504	SLAIN2	Q9P270	581 aa		13.83	□□□□□ -0.2
YBX3-215	ENST00000544504	ARHGAP31	Q2M1Z3	1444 aa		13.82	□□□□□ -0.2
YBX3-215	ENST00000544504	MSH6	P52701	1360 aa		13.82	□□□□□ -0.2
YBX3-215	ENST00000544504	RBM33	Q96EV2	1170 aa	Known RBP	13.81	□□□□□ -0.2
YBX3-215	ENST00000544504	STAG3	Q9UJ98	1225 aa		13.81	□□□□□ -0.2
YBX3-215	ENST00000544504	SPATA31A6	Q5VVP1	1343 aa		13.81	□□□□□ -0.2
YBX3-215	ENST00000544504	NKTR	P30414	1462 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-215	ENST00000544504	RPRD2	Q5VT52	1461 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-215	ENST00000544504	MEX3C	Q5U5Q3	659 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-215	ENST00000544504	SLC26A8	Q96RN1	970 aa		13.8	□□□□□ -0.2
YBX3-215	ENST00000544504	EFCAB6	Q5THR3	1501 aa		13.8	□□□□□ -0.2
YBX3-215	ENST00000544504	PHLPP1	O60346	1717 aa		13.79	□□□□□ -0.2
YBX3-215	ENST00000544504	TIMELESS	Q9UNS1	1208 aa		13.79	□□□□□ -0.2
YBX3-215	ENST00000544504	ANKRD30B	Q9BXX2	1392 aa		13.79	□□□□□ -0.2
YBX3-215	ENST00000544504	LRP6	O75581	1613 aa		13.77	□□□□□ -0.21
YBX3-215	ENST00000544504	CEP152	O94986	1710 aa		13.77	□□□□□ -0.21
YBX3-215	ENST00000544504	RXRB	P28702	533 aa		13.77	□□□□□ -0.21
YBX3-215	ENST00000544504	PIK3C2B	O00750	1634 aa		13.76	□□□□□ -0.21
YBX3-215	ENST00000544504	NWD1	Q149M9	1564 aa		13.76	□□□□□ -0.21
YBX3-215	ENST00000544504	COL16A1	Q07092	1604 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-215	ENST00000544504	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-215	ENST00000544504		E9PCH4	1651 aa		13.75	□□□□□ -0.21
YBX3-215	ENST00000544504	KDM5A	P29375	1690 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-215	ENST00000544504	IDI1	Q13907	227 aa		13.74	□□□□□ -0.21
YBX3-215	ENST00000544504	FOXD1	Q16676	465 aa		13.74	□□□□□ -0.21
YBX3-215	ENST00000544504	CCDC144A	A2RUR9	1427 aa		13.73	□□□□□ -0.21
YBX3-215	ENST00000544504	TRPM2	O94759	1503 aa		13.73	□□□□□ -0.21
YBX3-215	ENST00000544504	SPHKAP	Q2M3C7	1700 aa		13.73	□□□□□ -0.21
YBX3-215	ENST00000544504	BCAN	Q96GW7	911 aa		13.72	□□□□□ -0.21
YBX3-215	ENST00000544504	NCOA3	Q9Y6Q9	1424 aa		13.72	□□□□□ -0.21
YBX3-215	ENST00000544504	TONSL	Q96HA7	1378 aa		13.71	□□□□□ -0.21
YBX3-215	ENST00000544504	CFAP65	Q6ZU64	1925 aa	Known RBP	13.71	□□□□□ -0.21
YBX3-215	ENST00000544504	NEUROD1	Q13562	356 aa		13.71	□□□□□ -0.21
YBX3-215	ENST00000544504	SIN3A	Q96ST3	1273 aa		13.7	□□□□□ -0.22
YBX3-215	ENST00000544504	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.68	□□□□□ -0.22
YBX3-215	ENST00000544504	NOS1	P29475	1434 aa		13.68	□□□□□ -0.22
YBX3-215	ENST00000544504	CADPS2	Q86UW7	1296 aa		13.68	□□□□□ -0.22
YBX3-215	ENST00000544504	SHPRH	Q149N8	1683 aa		13.68	□□□□□ -0.22
YBX3-215	ENST00000544504	ADGRB3	O60242	1522 aa		13.68	□□□□□ -0.22
YBX3-215	ENST00000544504	C14orf37	Q86TY3	774 aa		13.67	□□□□□ -0.22
YBX3-215	ENST00000544504	SLC52A1	Q9NWF4	448 aa		13.67	□□□□□ -0.22
YBX3-215	ENST00000544504	PLEKHG1	Q9ULL1	1385 aa		13.67	□□□□□ -0.22
YBX3-215	ENST00000544504	AFF2	P51816	1311 aa		13.66	□□□□□ -0.22
YBX3-215	ENST00000544504	ATF3	P18847	181 aa		13.66	□□□□□ -0.22
YBX3-215	ENST00000544504	C19orf44	Q9H6X5	657 aa		13.66	□□□□□ -0.22
YBX3-215	ENST00000544504	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-215	ENST00000544504	NUTM2E	B1AL46	878 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-215	ENST00000544504	HDGF	P51858	240 aa	Known RBP	13.65	□□□□□ -0.22
YBX3-215	ENST00000544504	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-215	ENST00000544504	STAC3	Q96MF2	364 aa		13.65	□□□□□ -0.22
YBX3-215	ENST00000544504	TBX22	Q9Y458	520 aa		13.64	□□□□□ -0.23
YBX3-215	ENST00000544504	RGS12	O14924	1447 aa		13.64	□□□□□ -0.23
YBX3-215	ENST00000544504	PPP1R15A	O75807	674 aa	Predicted RBP	13.63	□□□□□ -0.23
YBX3-215	ENST00000544504	RBM6	P78332	1123 aa	Known RBP	13.63	□□□□□ -0.23
YBX3-215	ENST00000544504	CLTCL1	P53675	1640 aa		13.63	□□□□□ -0.23
YBX3-215	ENST00000544504	ZFYVE9	O95405	1425 aa		13.63	□□□□□ -0.23
YBX3-215	ENST00000544504	EP400	Q96L91	3159 aa		13.63	□□□□□ -0.23
YBX3-215	ENST00000544504	DIP2A	Q14689	1571 aa		13.62	□□□□□ -0.23
YBX3-215	ENST00000544504	BRINP3	Q76B58	766 aa		13.62	□□□□□ -0.23
YBX3-215	ENST00000544504	CHD2	O14647	1828 aa	Known RBP	13.62	□□□□□ -0.23
YBX3-215	ENST00000544504	KIF1B	O60333	1816 aa		13.62	□□□□□ -0.23
YBX3-215	ENST00000544504	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.61	□□□□□ -0.23
YBX3-215	ENST00000544504	QTRT2	Q9H974	415 aa	Known RBP	13.61	□□□□□ -0.23
YBX3-215	ENST00000544504	SPATA31E1	Q6ZUB1	1445 aa		13.6	□□□□□ -0.23
YBX3-215	ENST00000544504	ZRANB1	Q9UGI0	708 aa		13.6	□□□□□ -0.23
YBX3-215	ENST00000544504	ATAD2	Q6PL18	1390 aa		13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	PIK3R4	Q99570	1358 aa		13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	RIMS2	Q9UQ26	1411 aa		13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	L3MBTL2	Q969R5	705 aa		13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	NGLY1	Q96IV0	654 aa		13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	C8orf37	Q96NL8	207 aa		13.59	□□□□□ -0.23
YBX3-215	ENST00000544504	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
YBX3-215	ENST00000544504	LRRC59	Q96AG4	307 aa	Known RBP	13.58	□□□□□ -0.24
YBX3-215	ENST00000544504	RPGRIP1L	Q68CZ1	1315 aa		13.58	□□□□□ -0.24
YBX3-215	ENST00000544504	DCC	P43146	1447 aa		13.57	□□□□□ -0.24
YBX3-215	ENST00000544504	ASXL1	Q8IXJ9	1541 aa		13.56	□□□□□ -0.24
YBX3-215	ENST00000544504	RGL3	Q3MIN7	710 aa		13.56	□□□□□ -0.24
YBX3-215	ENST00000544504	ADAMTS13	Q76LX8	1427 aa		13.56	□□□□□ -0.24
YBX3-215	ENST00000544504	CHGA	P10645	457 aa	Known RBP	13.55	□□□□□ -0.24
YBX3-215	ENST00000544504	DCAF11	Q8TEB1	546 aa		13.54	□□□□□ -0.24
YBX3-215	ENST00000544504	ZNF326	Q5BKZ1	582 aa	Known RBP	13.53	□□□□□ -0.24
YBX3-215	ENST00000544504	AMOTL2	Q9Y2J4	779 aa		13.53	□□□□□ -0.24
YBX3-215	ENST00000544504	PNPLA6	Q8IY17	1366 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms