RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 MFSD10Q14728 455 aa6.54□□□□□ -1.36
CD44-213ENST00000525209 CC2D2BQ6DHV5 1058 aa6.54□□□□□ -1.36
CD44-213ENST00000525209 IVNS1ABPQ9Y6Y0 642 aa6.54□□□□□ -1.36
CD44-213ENST00000525209 IRF6O14896 467 aa6.53□□□□□ -1.36
CD44-213ENST00000525209 MAP2K5Q13163 448 aa6.53□□□□□ -1.36
CD44-213ENST00000525209 CAMK2BQ13554 666 aa6.53□□□□□ -1.36
CD44-213ENST00000525209 LARP6Q9BRS8 491 aaKnown RBP6.53□□□□□ -1.36
CD44-213ENST00000525209 SMARCA5O60264 1052 aaPredicted RBP6.52□□□□□ -1.37
CD44-213ENST00000525209 LSM11P83369 360 aaKnown RBP eCLIP6.52□□□□□ -1.37
CD44-213ENST00000525209 SH3D19Q5HYK7 790 aa6.52□□□□□ -1.37
CD44-213ENST00000525209 ANKRD13AQ8IZ07 590 aa6.52□□□□□ -1.37
CD44-213ENST00000525209 OXER1Q8TDS5 423 aa6.52□□□□□ -1.37
CD44-213ENST00000525209 DRC1Q96MC2 740 aa6.52□□□□□ -1.37
CD44-213ENST00000525209 BCCIPQ9P287 314 aaKnown RBP eCLIP6.52□□□□□ -1.37
CD44-213ENST00000525209 SPDYE5A6NIY4 337 aa6.51□□□□□ -1.37
CD44-213ENST00000525209 PDE4AP27815 886 aa6.51□□□□□ -1.37
CD44-213ENST00000525209 ZNF592Q92610 1267 aa6.51□□□□□ -1.37
CD44-213ENST00000525209 PSMD1Q99460 953 aa6.51□□□□□ -1.37
CD44-213ENST00000525209 KIAA1522Q9P206 1035 aaPredicted RBP6.51□□□□□ -1.37
CD44-213ENST00000525209 TBC1D12O60347 775 aa6.5□□□□□ -1.37
CD44-213ENST00000525209 NCLP19338 710 aaKnown RBP6.5□□□□□ -1.37
CD44-213ENST00000525209 RNF166Q96A37 237 aaPredicted RBP6.5□□□□□ -1.37
CD44-213ENST00000525209 PBXIP1Q96AQ6 731 aa6.5□□□□□ -1.37
CD44-213ENST00000525209 PSEN2P49810 448 aa6.49□□□□□ -1.37
CD44-213ENST00000525209 TICAM2Q86XR7 235 aa6.49□□□□□ -1.37
CD44-213ENST00000525209 DDX27Q96GQ7 796 aaKnown RBP6.49□□□□□ -1.37
CD44-213ENST00000525209 CLSTN1O94985 981 aa6.48□□□□□ -1.37
CD44-213ENST00000525209 CSB-PGBD3P0DP91 1061 aa6.48□□□□□ -1.37
CD44-213ENST00000525209 MS4A1P11836 297 aa6.48□□□□□ -1.37
CD44-213ENST00000525209 PBX2P40425 430 aa6.48□□□□□ -1.37
CD44-213ENST00000525209 DMRTA1Q5VZB9 504 aa6.48□□□□□ -1.37
CD44-213ENST00000525209 SREK1Q8WXA9 508 aaKnown RBP6.48□□□□□ -1.37
CD44-213ENST00000525209 MRRFQ96E11 262 aaKnown RBP6.48□□□□□ -1.37
CD44-213ENST00000525209 CALR3Q96L12 384 aaKnown RBP6.48□□□□□ -1.37
CD44-213ENST00000525209 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.48□□□□□ -1.37
CD44-213ENST00000525209 TTLL12Q14166 644 aaPredicted RBP6.47□□□□□ -1.37
CD44-213ENST00000525209 SKIV2LQ15477 1246 aaKnown RBP6.47□□□□□ -1.37
CD44-213ENST00000525209 C8orf37Q96NL8 207 aa6.47□□□□□ -1.37
CD44-213ENST00000525209 BRPF3Q9ULD4 1205 aa6.47□□□□□ -1.37
CD44-213ENST00000525209 ARHGAP33O14559 1287 aa6.46□□□□□ -1.38
CD44-213ENST00000525209 KDM4AO75164 1064 aa6.46□□□□□ -1.38
CD44-213ENST00000525209 PPP4R3BQ5MIZ7 849 aa6.46□□□□□ -1.38
CD44-213ENST00000525209 TXNDC2Q86VQ3 553 aa6.46□□□□□ -1.38
CD44-213ENST00000525209 EMILIN3Q9NT22 766 aa6.46□□□□□ -1.38
CD44-213ENST00000525209 PSDA5PKW4 1024 aaPredicted RBP6.45□□□□□ -1.38
CD44-213ENST00000525209 EVI5O60447 810 aa6.45□□□□□ -1.38
CD44-213ENST00000525209 TSR1Q2NL82 804 aaKnown RBP6.45□□□□□ -1.38
CD44-213ENST00000525209 GIGYF2Q6Y7W6 1299 aaKnown RBP6.45□□□□□ -1.38
CD44-213ENST00000525209 ZNF454Q8N9F8 522 aa6.45□□□□□ -1.38
CD44-213ENST00000525209 KCNK17Q96T54 332 aa6.45□□□□□ -1.38
CD44-213ENST00000525209 ZC3H4Q9UPT8 1303 aaKnown RBP6.45□□□□□ -1.38
CD44-213ENST00000525209 ADGRD1Q6QNK2 874 aa6.44□□□□□ -1.38
CD44-213ENST00000525209 BANK1Q8NDB2 785 aa6.44□□□□□ -1.38
CD44-213ENST00000525209 CARNS1A5YM72 827 aa6.43□□□□□ -1.38
CD44-213ENST00000525209 TCF3P15923 654 aa6.43□□□□□ -1.38
CD44-213ENST00000525209 SRPK2P78362 688 aaKnown RBP6.43□□□□□ -1.38
CD44-213ENST00000525209 MAP3K9P80192 1104 aa6.43□□□□□ -1.38
CD44-213ENST00000525209 GLMNQ92990 594 aa6.43□□□□□ -1.38
CD44-213ENST00000525209 VRTNQ9H8Y1 702 aa6.43□□□□□ -1.38
CD44-213ENST00000525209 SNRKQ9NRH2 765 aa6.43□□□□□ -1.38
CD44-213ENST00000525209 GNEQ9Y223 722 aaKnown RBP6.43□□□□□ -1.38
CD44-213ENST00000525209 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.42□□□□□ -1.38
CD44-213ENST00000525209 ANKRD62A6NC57 917 aa6.42□□□□□ -1.38
CD44-213ENST00000525209 ERCC3P19447 782 aa6.42□□□□□ -1.38
CD44-213ENST00000525209 PROCA1Q8NCQ7 364 aaPredicted RBP6.42□□□□□ -1.38
CD44-213ENST00000525209 GNPATO15228 680 aa6.41□□□□□ -1.38
CD44-213ENST00000525209 PTGER2P43116 358 aa6.41□□□□□ -1.38
CD44-213ENST00000525209 FOSBP53539 338 aa6.41□□□□□ -1.38
CD44-213ENST00000525209 TMED8Q6PL24 325 aaPredicted RBP6.41□□□□□ -1.38
CD44-213ENST00000525209 WWC1Q8IX03 1113 aa6.41□□□□□ -1.38
CD44-213ENST00000525209 UBXN4Q92575 508 aa6.41□□□□□ -1.38
CD44-213ENST00000525209 SPDYE16A6NNV3 312 aaPredicted RBP6.4□□□□□ -1.38
CD44-213ENST00000525209 ZNF16P17020 682 aaPredicted RBP6.4□□□□□ -1.38
CD44-213ENST00000525209 NOL8Q76FK4 1167 aaKnown RBP6.4□□□□□ -1.38
CD44-213ENST00000525209 SIRT1Q96EB6 747 aa6.4□□□□□ -1.38
CD44-213ENST00000525209 HIRIP3Q9BW71 556 aaPredicted RBP6.4□□□□□ -1.38
CD44-213ENST00000525209 REPIN1Q9BWE0 567 aaKnown RBP6.4□□□□□ -1.38
CD44-213ENST00000525209 ANO8Q9HCE9 1232 aaPredicted RBP6.4□□□□□ -1.38
CD44-213ENST00000525209 POM121CA8CG34 1229 aa6.39□□□□□ -1.39
CD44-213ENST00000525209 DPYSL4O14531 572 aa6.39□□□□□ -1.39
CD44-213ENST00000525209 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.39□□□□□ -1.39
CD44-213ENST00000525209 ADAM33Q9BZ11 813 aa6.39□□□□□ -1.39
CD44-213ENST00000525209 GDPD2Q9HCC8 539 aa6.39□□□□□ -1.39
CD44-213ENST00000525209 HRO43593 1189 aa6.38□□□□□ -1.39
CD44-213ENST00000525209 RFX1P22670 979 aa6.38□□□□□ -1.39
CD44-213ENST00000525209 PDIA6Q15084 440 aa6.38□□□□□ -1.39
CD44-213ENST00000525209 DNAJC14Q6Y2X3 702 aaPredicted RBP6.38□□□□□ -1.39
CD44-213ENST00000525209 JPH4Q96JJ6 628 aa6.38□□□□□ -1.39
CD44-213ENST00000525209 PRDM16Q9HAZ2 1276 aa6.38□□□□□ -1.39
CD44-213ENST00000525209 BCL2L12Q9HB09 334 aa6.38□□□□□ -1.39
CD44-213ENST00000525209 NUTM2FA1L443 756 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 PLEKHD1A6NEE1 506 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 TK2O00142 265 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 MARCH6O60337 910 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 FECHP22830 423 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 ZC3H6P61129 1189 aaKnown RBP6.37□□□□□ -1.39
CD44-213ENST00000525209 HIC1Q14526 733 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 CFAP70Q5T0N1 1121 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 ZDHHC16Q969W1 377 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 KCNH8Q96L42 1107 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms