RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 HDGFL2Q7Z4V5 671 aaPredicted RBP13.2□□□□□ -0.3
MCF2-209ENST00000520602 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.2□□□□□ -0.3
MCF2-209ENST00000520602 TTC37Q6PGP7 1564 aa13.2□□□□□ -0.3
MCF2-209ENST00000520602 KDM5BQ9UGL1 1544 aa13.2□□□□□ -0.3
MCF2-209ENST00000520602 CDC42BPAQ5VT25 1732 aa13.2□□□□□ -0.3
MCF2-209ENST00000520602 CRBNQ96SW2 442 aa13.2□□□□□ -0.3
MCF2-209ENST00000520602 A2MP01023 1474 aa13.19□□□□□ -0.3
MCF2-209ENST00000520602 CGNL1Q0VF96 1302 aa13.19□□□□□ -0.3
MCF2-209ENST00000520602 NUTM2FA1L443 756 aa13.19□□□□□ -0.3
MCF2-209ENST00000520602 TRHP20396 242 aaPredicted RBP13.19□□□□□ -0.3
MCF2-209ENST00000520602 TERF2IPQ9NYB0 399 aa13.19□□□□□ -0.3
MCF2-209ENST00000520602 ARHGEF12Q9NZN5 1544 aa13.19□□□□□ -0.3
MCF2-209ENST00000520602 SMG6Q86US8 1419 aaKnown RBP13.19□□□□□ -0.3
MCF2-209ENST00000520602 ARHGEF5Q12774 1597 aa13.18□□□□□ -0.3
MCF2-209ENST00000520602 PER1O15534 1290 aaPredicted RBP13.17□□□□□ -0.3
MCF2-209ENST00000520602 GGNBP2Q9H3C7 697 aa13.17□□□□□ -0.3
MCF2-209ENST00000520602 IDI1Q13907 227 aa13.16□□□□□ -0.3
MCF2-209ENST00000520602 FTSJ3Q8IY81 847 aaKnown RBP13.16□□□□□ -0.3
MCF2-209ENST00000520602 MTHFSP49914 203 aa13.16□□□□□ -0.3
MCF2-209ENST00000520602 BCL2L13Q9BXK5 485 aa13.16□□□□□ -0.3
MCF2-209ENST00000520602 HDGFP51858 240 aaKnown RBP13.15□□□□□ -0.3
MCF2-209ENST00000520602 C14orf37Q86TY3 774 aa13.15□□□□□ -0.3
MCF2-209ENST00000520602 FBXO31Q5XUX0 539 aaPredicted RBP13.15□□□□□ -0.3
MCF2-209ENST00000520602 CLUAP1Q96AJ1 413 aa13.15□□□□□ -0.3
MCF2-209ENST00000520602 ADCY10Q96PN6 1610 aa13.14□□□□□ -0.31
MCF2-209ENST00000520602 NOS1P29475 1434 aa13.14□□□□□ -0.31
MCF2-209ENST00000520602 PRAM1Q96QH2 718 aa13.14□□□□□ -0.31
MCF2-209ENST00000520602 SCAF11Q99590 1463 aaKnown RBP13.13□□□□□ -0.31
MCF2-209ENST00000520602 SLC52A1Q9NWF4 448 aa13.13□□□□□ -0.31
MCF2-209ENST00000520602 RTEL1-TNFRSF6BF6WH68 1400 aa13.13□□□□□ -0.31
MCF2-209ENST00000520602 PREX2Q70Z35 1606 aa13.13□□□□□ -0.31
MCF2-209ENST00000520602 PLA2R1Q13018 1463 aa13.12□□□□□ -0.31
MCF2-209ENST00000520602 NOP58Q9Y2X3 529 aaKnown RBP13.12□□□□□ -0.31
MCF2-209ENST00000520602 E9PSI1 815 aa13.12□□□□□ -0.31
MCF2-209ENST00000520602 MYO5CQ9NQX4 1742 aa13.11□□□□□ -0.31
MCF2-209ENST00000520602 ZBTB7CA1YPR0 619 aa13.11□□□□□ -0.31
MCF2-209ENST00000520602 TCERG1O14776 1098 aaKnown RBP13.11□□□□□ -0.31
MCF2-209ENST00000520602 AMER1Q5JTC6 1135 aaPredicted RBP13.11□□□□□ -0.31
MCF2-209ENST00000520602 PARD3Q8TEW0 1356 aa13.1□□□□□ -0.31
MCF2-209ENST00000520602 RPGRIP1LQ68CZ1 1315 aa13.1□□□□□ -0.31
MCF2-209ENST00000520602 C14orf93Q9H972 538 aaKnown RBP13.09□□□□□ -0.31
MCF2-209ENST00000520602 ZNF518AQ6AHZ1 1483 aa13.09□□□□□ -0.31
MCF2-209ENST00000520602 TCP11L2Q8N4U5 519 aa13.09□□□□□ -0.31
MCF2-209ENST00000520602 UHRF1BP1LA0JNW5 1464 aa13.09□□□□□ -0.31
MCF2-209ENST00000520602 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
MCF2-209ENST00000520602 RUNDC1Q96C34 613 aa13.08□□□□□ -0.32
MCF2-209ENST00000520602 UPF2Q9HAU5 1272 aaKnown RBP13.08□□□□□ -0.32
MCF2-209ENST00000520602 COG6Q9Y2V7 657 aa13.08□□□□□ -0.32
MCF2-209ENST00000520602 ZCCHC11Q5TAX3 1644 aaKnown RBP13.08□□□□□ -0.32
MCF2-209ENST00000520602 ATP7AQ04656 1500 aa13.08□□□□□ -0.32
MCF2-209ENST00000520602 MAST1Q9Y2H9 1570 aa13.07□□□□□ -0.32
MCF2-209ENST00000520602 PNNQ9H307 717 aaKnown RBP13.07□□□□□ -0.32
MCF2-209ENST00000520602 NSD3Q9BZ95 1437 aa13.07□□□□□ -0.32
MCF2-209ENST00000520602 GPRASP1Q5JY77 1395 aa13.07□□□□□ -0.32
MCF2-209ENST00000520602 CDC42BPBQ9Y5S2 1711 aa13.07□□□□□ -0.32
MCF2-209ENST00000520602 KDM5CP41229 1560 aa13.06□□□□□ -0.32
MCF2-209ENST00000520602 BCAR3O75815 825 aa13.06□□□□□ -0.32
MCF2-209ENST00000520602 CABP1Q9NZU7 370 aa13.06□□□□□ -0.32
MCF2-209ENST00000520602 PDE4AP27815 886 aa13.06□□□□□ -0.32
MCF2-209ENST00000520602 COL17A1Q9UMD9 1497 aaPredicted RBP13.06□□□□□ -0.32
MCF2-209ENST00000520602 SMC4Q9NTJ3 1288 aa13.06□□□□□ -0.32
MCF2-209ENST00000520602 TXNDC2Q86VQ3 553 aa13.05□□□□□ -0.32
MCF2-209ENST00000520602 CARD14Q9BXL6 1004 aa13.05□□□□□ -0.32
MCF2-209ENST00000520602 C20orf194Q5TEA3 1177 aa13.05□□□□□ -0.32
MCF2-209ENST00000520602 CDK19Q9BWU1 502 aa13.05□□□□□ -0.32
MCF2-209ENST00000520602 ABCC1P33527 1531 aa13.05□□□□□ -0.32
MCF2-209ENST00000520602 CFAP65Q6ZU64 1925 aaKnown RBP13.05□□□□□ -0.32
MCF2-209ENST00000520602 CROCC2H7BZ55 1655 aa13.04□□□□□ -0.32
MCF2-209ENST00000520602 WAPLQ7Z5K2 1190 aa13.04□□□□□ -0.32
MCF2-209ENST00000520602 KDM5DQ9BY66 1539 aa13.04□□□□□ -0.32
MCF2-209ENST00000520602 DIAPH1O60610 1272 aaKnown RBP13.04□□□□□ -0.32
MCF2-209ENST00000520602 PANK1Q8TE04 598 aa13.04□□□□□ -0.32
MCF2-209ENST00000520602 ELL2O00472 640 aaPredicted RBP13.03□□□□□ -0.32
MCF2-209ENST00000520602 SKAP1Q86WV1 359 aa13.03□□□□□ -0.32
MCF2-209ENST00000520602 ATP10AO60312 1499 aa13.03□□□□□ -0.32
MCF2-209ENST00000520602 FANCIQ9NVI1 1328 aa13.03□□□□□ -0.32
MCF2-209ENST00000520602 EID1Q9Y6B2 187 aa13.03□□□□□ -0.32
MCF2-209ENST00000520602 BCORL1Q5H9F3 1711 aa13.03□□□□□ -0.32
MCF2-209ENST00000520602 ITPRIPQ8IWB1 547 aa13.02□□□□□ -0.32
MCF2-209ENST00000520602 HMOX1P09601 288 aa13.02□□□□□ -0.33
MCF2-209ENST00000520602 RIPK4P57078 832 aa13.02□□□□□ -0.33
MCF2-209ENST00000520602 SLFN5Q08AF3 891 aa13.02□□□□□ -0.33
MCF2-209ENST00000520602 LMOD2Q6P5Q4 547 aa13.02□□□□□ -0.33
MCF2-209ENST00000520602 IPO9Q96P70 1041 aaKnown RBP13.02□□□□□ -0.33
MCF2-209ENST00000520602 CENPQQ7L2Z9 268 aaPredicted RBP13.01□□□□□ -0.33
MCF2-209ENST00000520602 DDRGK1Q96HY6 314 aa13.01□□□□□ -0.33
MCF2-209ENST00000520602 LRPPRCP42704 1394 aaKnown RBP13.01□□□□□ -0.33
MCF2-209ENST00000520602 EIF2AK4Q9P2K8 1649 aaKnown RBP13.01□□□□□ -0.33
MCF2-209ENST00000520602 NGEFQ8N5V2 710 aa13□□□□□ -0.33
MCF2-209ENST00000520602 DUSP27Q5VZP5 1158 aa13□□□□□ -0.33
MCF2-209ENST00000520602 COG3Q96JB2 828 aa13□□□□□ -0.33
MCF2-209ENST00000520602 UGGT1Q9NYU2 1555 aa13□□□□□ -0.33
MCF2-209ENST00000520602 PAK3O75914 559 aaPredicted RBP13□□□□□ -0.33
MCF2-209ENST00000520602 MS4A1P11836 297 aa13□□□□□ -0.33
MCF2-209ENST00000520602 WWC1Q8IX03 1113 aa13□□□□□ -0.33
MCF2-209ENST00000520602 NGDNQ8NEJ9 315 aaKnown RBP12.99□□□□□ -0.33
MCF2-209ENST00000520602 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.99□□□□□ -0.33
MCF2-209ENST00000520602 TSR2Q969E8 191 aaKnown RBP12.98□□□□□ -0.33
MCF2-209ENST00000520602 SLC26A8Q96RN1 970 aa12.97□□□□□ -0.33
MCF2-209ENST00000520602 ASXL1Q8IXJ9 1541 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms