RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 EIF4ENIF1Q9NRA8 985 aaKnown RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 PNMA3Q9UL41 463 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 ARIH1Q9Y4X5 557 aaPredicted RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 PCDHB3Q9Y5E6 796 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 GRXCR2A6NFK2 248 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 DPYSL4O14531 572 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 GTPBP6O43824 516 aaPredicted RBP1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 PPP1R37O75864 691 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 FCHSD2O94868 740 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 CAMK2BQ13554 666 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 PDIA6Q15084 440 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 DMRTA1Q5VZB9 504 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 PAXIP1Q6ZW49 1069 aaPredicted RBP1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 ZNF592Q92610 1267 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 DDX12PQ92771 950 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 TATDN2Q93075 761 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 KIFC2Q96AC6 838 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 CDCA7LQ96GN5 454 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 ADAM33Q9BZ11 813 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 PDZRN3Q9UPQ7 1066 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 PCDHGA10Q9Y5H3 936 aa1.17□□□□□ -2.22
RNU4-54P-201ENST00000516428 PLEKHG3A1L390 1219 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 NUTM2FA1L443 756 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 TTC24A2A3L6 582 aaPredicted RBP1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 RNF225M0QZC1 329 aaPredicted RBP1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 ZPR1O75312 459 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 UPP2O95045 317 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 FMNL1O95466 1100 aaPredicted RBP1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 SLC19A1P41440 591 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 RPIAP49247 311 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 BCAMP50895 628 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 USP46P62068 366 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 HIC1Q14526 733 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 CTC1Q2NKJ3 1217 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 LCE1DQ5T752 114 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 NUDT18Q6ZVK8 323 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 SAMD7Q7Z3H4 446 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 CYP4X1Q8N118 509 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 ANKLE1Q8NAG6 615 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 RDH13Q8NBN7 331 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 KRTAP4-9Q9BYQ8 210 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 PRKD2Q9BZL6 878 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 WBP1LQ9NX94 342 aa1.16□□□□□ -2.22
RNU4-54P-201ENST00000516428 KDM4FA0A1W2PPD8 638 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PIK3R2O00459 728 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 LORP23490 312 aaPredicted RBP1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PRR20EP86478 221 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PRR20CP86479 221 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PRR20DP86480 221 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PRR20BP86481 221 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PRR20AP86496 221 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 SCARF1Q14162 830 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PROX2Q3B8N5 592 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 PPP1R18Q6NYC8 613 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 ZNF598Q86UK7 904 aaKnown RBP1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 MTRQ99707 1265 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 SLC6A16Q9GZN6 736 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 SEPT9Q9UHD8 586 aaPredicted RBP1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 SALL2Q9Y467 1007 aaPredicted RBP1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 NCKAP5LQ9HCH0 1330 aa1.15□□□□□ -2.23
RNU4-54P-201ENST00000516428 FAM187AA6NFU0 413 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 SPDYE5A6NIY4 337 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 POTECB2RU33 542 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 AXIN1O15169 862 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 ACTN4O43707 911 aaKnown RBP1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 WFS1O76024 890 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 ADH1BP00325 375 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 ATP6V1AP38606 617 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 COPS2P61201 443 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 NFX1Q12986 1120 aaKnown RBP1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 ZNF697Q5TEC3 545 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 NUTM1Q86Y26 1132 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 NPAS3Q8IXF0 933 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 ARMC2Q8NEN0 867 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 SPSB2Q99619 263 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 ESF1Q9H501 851 aaKnown RBP1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 WASF2Q9Y6W5 498 aa1.14□□□□□ -2.23
RNU4-54P-201ENST00000516428 C11orf95C9JLR9 678 aaPredicted RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 APBB1O00213 710 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 GNPATO15228 680 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 CFHP08603 1231 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 COL9A1P20849 921 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 GTF2E1P29083 439 aaPredicted RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 CLCN1P35523 988 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 GSK3AP49840 483 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 WNT7BP56706 349 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 NKX1-1Q15270 411 aaPredicted RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 TJAP1Q5JTD0 557 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 SWT1Q5T5J6 900 aaKnown RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 LCE2CQ5TA81 110 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 SPRYD7Q5W111 196 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 FOXR1Q6PIV2 292 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 CCDC125Q86Z20 511 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 KRTAP19-1Q8IUB9 90 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 GPIHBP1Q8IV16 184 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 SNIP1Q8TAD8 396 aaKnown RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 IRF7Q92985 503 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 BCANQ96GW7 911 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 TMEM134Q9H6X4 195 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms