RNA–Protein interactions for RNA: ENST00000515452.1

NR1I3-233, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 2 BASIC

Gene NR1I3, Length 1,093 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-233	ENST00000515452	NAIP	Q13075	1403 aa		11.85	□□□□□ -0.51
NR1I3-233	ENST00000515452	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.84	□□□□□ -0.51
NR1I3-233	ENST00000515452	MSH6	P52701	1360 aa		11.83	□□□□□ -0.52
NR1I3-233	ENST00000515452	RBM33	Q96EV2	1170 aa	Known RBP	11.83	□□□□□ -0.52
NR1I3-233	ENST00000515452	IQGAP3	Q86VI3	1631 aa		11.82	□□□□□ -0.52
NR1I3-233	ENST00000515452	HFM1	A2PYH4	1435 aa		11.82	□□□□□ -0.52
NR1I3-233	ENST00000515452	STAG3	Q9UJ98	1225 aa		11.81	□□□□□ -0.52
NR1I3-233	ENST00000515452	TET3	O43151	1660 aa		11.81	□□□□□ -0.52
NR1I3-233	ENST00000515452	SRCAP	Q6ZRS2	3230 aa		11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	NUTM2E	B1AL46	878 aa	Predicted RBP	11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	RBM6	P78332	1123 aa	Known RBP	11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	ARHGAP23	Q9P227	1491 aa		11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452		E9PCH4	1651 aa		11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	PHLPP1	O60346	1717 aa		11.8	□□□□□ -0.52
NR1I3-233	ENST00000515452	SLC26A8	Q96RN1	970 aa		11.79	□□□□□ -0.52
NR1I3-233	ENST00000515452	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.79	□□□□□ -0.52
NR1I3-233	ENST00000515452	QTRT2	Q9H974	415 aa	Known RBP	11.79	□□□□□ -0.52
NR1I3-233	ENST00000515452	SLIT1	O75093	1534 aa		11.79	□□□□□ -0.52
NR1I3-233	ENST00000515452	LMTK2	Q8IWU2	1503 aa		11.79	□□□□□ -0.52
NR1I3-233	ENST00000515452	EFCAB6	Q5THR3	1501 aa		11.78	□□□□□ -0.52
NR1I3-233	ENST00000515452	LRP6	O75581	1613 aa		11.78	□□□□□ -0.52
NR1I3-233	ENST00000515452	ERVK-7	P63135	1459 aa		11.77	□□□□□ -0.52
NR1I3-233	ENST00000515452	NGLY1	Q96IV0	654 aa		11.77	□□□□□ -0.53
NR1I3-233	ENST00000515452	AFF2	P51816	1311 aa		11.77	□□□□□ -0.53
NR1I3-233	ENST00000515452	TMEM2	Q9UHN6	1383 aa		11.77	□□□□□ -0.53
NR1I3-233	ENST00000515452	BCAN	Q96GW7	911 aa		11.76	□□□□□ -0.53
NR1I3-233	ENST00000515452	UBR1	Q8IWV7	1749 aa		11.76	□□□□□ -0.53
NR1I3-233	ENST00000515452	CCDC125	Q86Z20	511 aa		11.75	□□□□□ -0.53
NR1I3-233	ENST00000515452	CADPS2	Q86UW7	1296 aa		11.74	□□□□□ -0.53
NR1I3-233	ENST00000515452	KANK1	Q14678	1352 aa		11.74	□□□□□ -0.53
NR1I3-233	ENST00000515452	MYO5B	Q9ULV0	1848 aa		11.74	□□□□□ -0.53
NR1I3-233	ENST00000515452	NUP155	O75694	1391 aa		11.73	□□□□□ -0.53
NR1I3-233	ENST00000515452	SPHKAP	Q2M3C7	1700 aa		11.73	□□□□□ -0.53
NR1I3-233	ENST00000515452	ATAD2	Q6PL18	1390 aa		11.73	□□□□□ -0.53
NR1I3-233	ENST00000515452	SETD5	Q9C0A6	1442 aa		11.73	□□□□□ -0.53
NR1I3-233	ENST00000515452	COL16A1	Q07092	1604 aa	Predicted RBP	11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	ARHGAP31	Q2M1Z3	1444 aa		11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	NCOA3	Q9Y6Q9	1424 aa		11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	RAB3GAP2	Q9H2M9	1393 aa		11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	ATF3	P18847	181 aa		11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	C14orf37	Q86TY3	774 aa		11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	C19orf44	Q9H6X5	657 aa		11.72	□□□□□ -0.53
NR1I3-233	ENST00000515452	NKTR	P30414	1462 aa	Known RBP	11.71	□□□□□ -0.53
NR1I3-233	ENST00000515452	IDI1	Q13907	227 aa		11.71	□□□□□ -0.53
NR1I3-233	ENST00000515452	PIK3C2B	O00750	1634 aa		11.71	□□□□□ -0.54
NR1I3-233	ENST00000515452	HDGF	P51858	240 aa	Known RBP	11.7	□□□□□ -0.54
NR1I3-233	ENST00000515452	LRRC59	Q96AG4	307 aa	Known RBP	11.7	□□□□□ -0.54
NR1I3-233	ENST00000515452	RGS12	O14924	1447 aa		11.69	□□□□□ -0.54
NR1I3-233	ENST00000515452	C8orf37	Q96NL8	207 aa		11.69	□□□□□ -0.54
NR1I3-233	ENST00000515452	RPRD2	Q5VT52	1461 aa	Known RBP	11.69	□□□□□ -0.54
NR1I3-233	ENST00000515452	NOS1	P29475	1434 aa		11.69	□□□□□ -0.54
NR1I3-233	ENST00000515452	SHPRH	Q149N8	1683 aa		11.68	□□□□□ -0.54
NR1I3-233	ENST00000515452	SETBP1	Q9Y6X0	1596 aa		11.67	□□□□□ -0.54
NR1I3-233	ENST00000515452	MSH5	O43196	834 aa		11.66	□□□□□ -0.54
NR1I3-233	ENST00000515452	TRIM26	Q12899	539 aa	Predicted RBP	11.66	□□□□□ -0.54
NR1I3-233	ENST00000515452	BRINP3	Q76B58	766 aa		11.66	□□□□□ -0.54
NR1I3-233	ENST00000515452	TBX22	Q9Y458	520 aa		11.66	□□□□□ -0.54
NR1I3-233	ENST00000515452	CLTCL1	P53675	1640 aa		11.66	□□□□□ -0.54
NR1I3-233	ENST00000515452	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.65	□□□□□ -0.54
NR1I3-233	ENST00000515452	TRPC5	Q9UL62	973 aa	Predicted RBP	11.65	□□□□□ -0.54
NR1I3-233	ENST00000515452	KDM5A	P29375	1690 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-233	ENST00000515452	NWD1	Q149M9	1564 aa		11.64	□□□□□ -0.55
NR1I3-233	ENST00000515452	SLC52A1	Q9NWF4	448 aa		11.64	□□□□□ -0.55
NR1I3-233	ENST00000515452	TMEM131L	A2VDJ0	1609 aa		11.64	□□□□□ -0.55
NR1I3-233	ENST00000515452	KIF1B	O60333	1816 aa		11.63	□□□□□ -0.55
NR1I3-233	ENST00000515452	USP21	Q9UK80	565 aa		11.63	□□□□□ -0.55
NR1I3-233	ENST00000515452	TRPM2	O94759	1503 aa		11.63	□□□□□ -0.55
NR1I3-233	ENST00000515452	ADGRB3	O60242	1522 aa		11.62	□□□□□ -0.55
NR1I3-233	ENST00000515452	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.62	□□□□□ -0.55
NR1I3-233	ENST00000515452	PPP1R15A	O75807	674 aa	Predicted RBP	11.61	□□□□□ -0.55
NR1I3-233	ENST00000515452	MPHOSPH9	Q99550	1183 aa		11.61	□□□□□ -0.55
NR1I3-233	ENST00000515452	ADAMTS2	O95450	1211 aa		11.6	□□□□□ -0.55
NR1I3-233	ENST00000515452	CHD2	O14647	1828 aa	Known RBP	11.6	□□□□□ -0.55
NR1I3-233	ENST00000515452	DIP2A	Q14689	1571 aa		11.59	□□□□□ -0.55
NR1I3-233	ENST00000515452	PLEKHG1	Q9ULL1	1385 aa		11.59	□□□□□ -0.55
NR1I3-233	ENST00000515452	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.59	□□□□□ -0.55
NR1I3-233	ENST00000515452	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.58	□□□□□ -0.56
NR1I3-233	ENST00000515452	HRC	P23327	699 aa		11.57	□□□□□ -0.56
NR1I3-233	ENST00000515452	SF3B2	Q13435	895 aa	Known RBP	11.57	□□□□□ -0.56
NR1I3-233	ENST00000515452	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.57	□□□□□ -0.56
NR1I3-233	ENST00000515452	PIK3R4	Q99570	1358 aa		11.56	□□□□□ -0.56
NR1I3-233	ENST00000515452	IFT172	Q9UG01	1749 aa		11.56	□□□□□ -0.56
NR1I3-233	ENST00000515452	AMOTL2	Q9Y2J4	779 aa		11.56	□□□□□ -0.56
NR1I3-233	ENST00000515452	PPL	O60437	1756 aa		11.56	□□□□□ -0.56
NR1I3-233	ENST00000515452	PNPLA6	Q8IY17	1366 aa		11.55	□□□□□ -0.56
NR1I3-233	ENST00000515452	PCGF6	Q9BYE7	350 aa		11.55	□□□□□ -0.56
NR1I3-233	ENST00000515452	ZFYVE9	O95405	1425 aa		11.53	□□□□□ -0.56
NR1I3-233	ENST00000515452	BLM	P54132	1417 aa	Predicted RBP	11.53	□□□□□ -0.56
NR1I3-233	ENST00000515452	DEFB132	Q7Z7B7	95 aa		11.53	□□□□□ -0.56
NR1I3-233	ENST00000515452	GJD4	Q96KN9	370 aa	Predicted RBP	11.53	□□□□□ -0.56
NR1I3-233	ENST00000515452	NEXMIF	Q5QGS0	1516 aa		11.53	□□□□□ -0.56
NR1I3-233	ENST00000515452	ACIN1	Q9UKV3	1341 aa	Known RBP	11.53	□□□□□ -0.56
NR1I3-233	ENST00000515452	DCC	P43146	1447 aa		11.52	□□□□□ -0.56
NR1I3-233	ENST00000515452	CHGA	P10645	457 aa	Known RBP	11.52	□□□□□ -0.57
NR1I3-233	ENST00000515452	YY1	P25490	414 aa		11.52	□□□□□ -0.57
NR1I3-233	ENST00000515452	DDX17	Q92841	729 aa	Known RBP	11.52	□□□□□ -0.57
NR1I3-233	ENST00000515452	DHX57	Q6P158	1386 aa	Known RBP	11.52	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms