RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TRAK2O60296 914 aa13.55□□□□□ -0.24
LIMCH1-217ENST00000512946 IQCEQ6IPM2 695 aa13.55□□□□□ -0.24
LIMCH1-217ENST00000512946 SMC3Q9UQE7 1217 aa13.55□□□□□ -0.24
LIMCH1-217ENST00000512946 EZRP15311 586 aaKnown RBP13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 PLCD4Q9BRC7 762 aa13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 DDX19BQ9UMR2 479 aa13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 PDCL3Q9H2J4 239 aa13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 ANO8Q9HCE9 1232 aaPredicted RBP13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 NOL8Q76FK4 1167 aaKnown RBP13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 ROCK1Q13464 1354 aa13.54□□□□□ -0.24
LIMCH1-217ENST00000512946 INTS3Q68E01 1043 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 KIF15Q9NS87 1388 aa13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 DDX11Q96FC9 970 aa13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 TSPY26PQ9H489 355 aa13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 PDIA4P13667 645 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 FILIP1LQ4L180 1135 aa13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 UBE2Q2Q8WVN8 375 aa13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 WWC1Q8IX03 1113 aa13.53□□□□□ -0.24
LIMCH1-217ENST00000512946 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 MYBBP1AQ9BQG0 1328 aaKnown RBP13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 CPLX1O14810 134 aa13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 PDCP20941 246 aa13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 FOXD4L5Q5VV16 416 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 MCTP1Q6DN14 999 aa13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 FOXD4L4Q8WXT5 416 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-217ENST00000512946 SAFBQ15424 915 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 OFD1O75665 1012 aa13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 NAP1L1P55209 391 aaKnown RBP13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 SRPK2P78362 688 aaKnown RBP13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 ODF2Q5BJF6 829 aa13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 CT47A1Q5JQC4 288 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 TRIM5Q9C035 493 aa13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 TMX4Q9H1E5 349 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-217ENST00000512946 ESPNB1AK53 854 aa13.5□□□□□ -0.25
LIMCH1-217ENST00000512946 ANKRD45Q5TZF3 282 aa13.5□□□□□ -0.25
LIMCH1-217ENST00000512946 POLR3GO15318 223 aaPredicted RBP13.49□□□□□ -0.25
LIMCH1-217ENST00000512946 C22orf23Q9BZE7 217 aa13.49□□□□□ -0.25
LIMCH1-217ENST00000512946 SLC4A3P48751 1232 aa13.49□□□□□ -0.25
LIMCH1-217ENST00000512946 MICALCLQ6ZW33 695 aa13.49□□□□□ -0.25
LIMCH1-217ENST00000512946 UQCRHLA0A096LP55 91 aa13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 UQCRHP07919 91 aa13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 CWC22Q9HCG8 908 aaKnown RBP13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 SHTN1A0MZ66 631 aa13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 MCM3P25205 808 aa13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 TOMM22Q9NS69 142 aa13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 HSP90AB4PQ58FF6 505 aa13.48□□□□□ -0.25
LIMCH1-217ENST00000512946 API5Q9BZZ5 524 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-217ENST00000512946 CIZ1Q9ULV3 898 aaPredicted RBP13.47□□□□□ -0.25
LIMCH1-217ENST00000512946 HSP90AB2PQ58FF8 381 aa13.47□□□□□ -0.25
LIMCH1-217ENST00000512946 TERF2IPQ9NYB0 399 aa13.47□□□□□ -0.25
LIMCH1-217ENST00000512946 RILPL2Q969X0 211 aa13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 SDF4Q9BRK5 362 aa13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 TRDNQ13061 729 aa13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 ZSCAN30Q86W11 494 aa13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 ZNHIT6Q9NWK9 470 aaKnown RBP13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 GOLGA6L10A0A0M3HER8 536 aa13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 CLUAP1Q96AJ1 413 aa13.46□□□□□ -0.25
LIMCH1-217ENST00000512946 KIF27Q86VH2 1401 aa13.46□□□□□ -0.26
LIMCH1-217ENST00000512946 CBFA2T2O43439 604 aa13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 KINO60870 393 aaKnown RBP13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 DACH1Q9UI36 760 aa13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 CCDC192P0DO97 292 aa13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 CHMP7Q8WUX9 453 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 SLC26A8Q96RN1 970 aa13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 RBM10P98175 930 aaKnown RBP13.45□□□□□ -0.26
LIMCH1-217ENST00000512946 VPS37CA5D8V6 355 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 AMOTL1Q8IY63 956 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 EXOC6Q8TAG9 804 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 PSMA5P28066 241 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 TTLL5Q6EMB2 1281 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 SPATA24Q86W54 205 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 CCDC146Q8IYE0 955 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 SEPT7Q16181 437 aaKnown RBP13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 MAP9Q49MG5 647 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 CTR9Q6PD62 1173 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 TMCO3Q6UWJ1 677 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 GRPEL1Q9HAV7 217 aa13.44□□□□□ -0.26
LIMCH1-217ENST00000512946 TXLNAP40222 546 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 LRRCC1Q9C099 1032 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 ANO2Q9NQ90 1003 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 BRPF3Q9ULD4 1205 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 XBP1P17861 261 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 PDILTQ8N807 584 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 CRBNQ96SW2 442 aa13.43□□□□□ -0.26
LIMCH1-217ENST00000512946 CDC45O75419 566 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 UBXN4Q92575 508 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 CGNQ9P2M7 1197 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 MCM5P33992 734 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 BRMS1Q9HCU9 246 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 VPS53Q5VIR6 699 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 SLC4A10Q6U841 1118 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 CLASRPQ8N2M8 674 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 ERC2O15083 957 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 JMYQ8N9B5 988 aa13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 DNAJC2Q99543 621 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-217ENST00000512946 ZNF396Q96N95 335 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-217ENST00000512946 FILIP1Q7Z7B0 1213 aa13.41□□□□□ -0.26
LIMCH1-217ENST00000512946 EPS15P42566 896 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms