RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 CCDC82Q8N4S0 544 aa13.32□□□□□ -0.28
USP53-207ENST00000510852 KIF15Q9NS87 1388 aa13.31□□□□□ -0.28
USP53-207ENST00000510852 MYT1LQ9UL68 1186 aa13.31□□□□□ -0.28
USP53-207ENST00000510852 KDM5CP41229 1560 aa13.31□□□□□ -0.28
USP53-207ENST00000510852 PLCD4Q9BRC7 762 aa13.31□□□□□ -0.28
USP53-207ENST00000510852 GZF1Q9H116 711 aaPredicted RBP13.31□□□□□ -0.28
USP53-207ENST00000510852 ZFYVE16Q7Z3T8 1539 aa13.31□□□□□ -0.28
USP53-207ENST00000510852 COL17A1Q9UMD9 1497 aaPredicted RBP13.3□□□□□ -0.28
USP53-207ENST00000510852 TRAIPQ9BWF2 469 aa13.3□□□□□ -0.28
USP53-207ENST00000510852 ATP7AQ04656 1500 aa13.29□□□□□ -0.28
USP53-207ENST00000510852 MLH3Q9UHC1 1453 aa13.29□□□□□ -0.28
USP53-207ENST00000510852 INO80Q9ULG1 1556 aaPredicted RBP13.29□□□□□ -0.28
USP53-207ENST00000510852 RICTORQ6R327 1708 aa13.29□□□□□ -0.28
USP53-207ENST00000510852 PLXNC1O60486 1568 aa13.28□□□□□ -0.28
USP53-207ENST00000510852 FRMPD1Q5SYB0 1578 aa13.28□□□□□ -0.28
USP53-207ENST00000510852 GCC2Q8IWJ2 1684 aa13.28□□□□□ -0.28
USP53-207ENST00000510852 ANKRD50Q9ULJ7 1429 aa13.28□□□□□ -0.28
USP53-207ENST00000510852 ECM2O94769 699 aaPredicted RBP13.27□□□□□ -0.29
USP53-207ENST00000510852 HECW2Q9P2P5 1572 aa13.27□□□□□ -0.29
USP53-207ENST00000510852 KDM6BO15054 1643 aa13.26□□□□□ -0.29
USP53-207ENST00000510852 RGL2O15211 777 aa13.26□□□□□ -0.29
USP53-207ENST00000510852 KIDINS220Q9ULH0 1771 aa13.26□□□□□ -0.29
USP53-207ENST00000510852 CCDC125Q86Z20 511 aa13.25□□□□□ -0.29
USP53-207ENST00000510852 ZMYM4Q5VZL5 1548 aa13.25□□□□□ -0.29
USP53-207ENST00000510852 DUOX2Q9NRD8 1548 aa13.25□□□□□ -0.29
USP53-207ENST00000510852 SLC24A3Q9HC58 644 aa13.23□□□□□ -0.29
USP53-207ENST00000510852 YEATS2Q9ULM3 1422 aa13.23□□□□□ -0.29
USP53-207ENST00000510852 MAGI2Q86UL8 1455 aa13.23□□□□□ -0.29
USP53-207ENST00000510852 ZNF316A6NFI3 1004 aaPredicted RBP13.23□□□□□ -0.29
USP53-207ENST00000510852 DHX29Q7Z478 1369 aaKnown RBP13.23□□□□□ -0.29
USP53-207ENST00000510852 ERBINQ96RT1 1412 aa13.22□□□□□ -0.29
USP53-207ENST00000510852 TRIM52Q96A61 297 aa13.22□□□□□ -0.29
USP53-207ENST00000510852 ABCA6Q8N139 1617 aa13.21□□□□□ -0.29
USP53-207ENST00000510852 SETQ01105 290 aaPredicted RBP13.21□□□□□ -0.3
USP53-207ENST00000510852 A2MP01023 1474 aa13.21□□□□□ -0.3
USP53-207ENST00000510852 DIP2CQ9Y2E4 1556 aa13.2□□□□□ -0.3
USP53-207ENST00000510852 ACIN1Q9UKV3 1341 aaKnown RBP13.2□□□□□ -0.3
USP53-207ENST00000510852 DHX57Q6P158 1386 aaKnown RBP13.2□□□□□ -0.3
USP53-207ENST00000510852 CHRM1P11229 460 aaPredicted RBP13.2□□□□□ -0.3
USP53-207ENST00000510852 CCER1Q8TC90 406 aaPredicted RBP13.2□□□□□ -0.3
USP53-207ENST00000510852 KIF3BO15066 747 aa13.18□□□□□ -0.3
USP53-207ENST00000510852 ATP10AO60312 1499 aa13.18□□□□□ -0.3
USP53-207ENST00000510852 ANAPC15P60006 121 aa13.17□□□□□ -0.3
USP53-207ENST00000510852 SALL2Q9Y467 1007 aaPredicted RBP13.17□□□□□ -0.3
USP53-207ENST00000510852 NUP155O75694 1391 aa13.16□□□□□ -0.3
USP53-207ENST00000510852 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP53-207ENST00000510852 ARHGEF40Q8TER5 1519 aa13.16□□□□□ -0.3
USP53-207ENST00000510852 ATXN8OSP0DMR3 200 aa13.15□□□□□ -0.3
USP53-207ENST00000510852 PTMSP20962 102 aa13.15□□□□□ -0.3
USP53-207ENST00000510852 MKRN3Q13064 507 aaKnown RBP13.15□□□□□ -0.3
USP53-207ENST00000510852 MPHOSPH9Q99550 1183 aa13.15□□□□□ -0.3
USP53-207ENST00000510852 CHGAP10645 457 aaKnown RBP13.14□□□□□ -0.31
USP53-207ENST00000510852 EIF2AK4Q9P2K8 1649 aaKnown RBP13.14□□□□□ -0.31
USP53-207ENST00000510852 UNC13BO14795 1591 aa13.13□□□□□ -0.31
USP53-207ENST00000510852 PZPP20742 1482 aa13.13□□□□□ -0.31
USP53-207ENST00000510852 MAFGO15525 162 aa13.13□□□□□ -0.31
USP53-207ENST00000510852 GRIPAP1Q4V328 841 aa13.13□□□□□ -0.31
USP53-207ENST00000510852 NAP1L2Q9ULW6 460 aaPredicted RBP13.13□□□□□ -0.31
USP53-207ENST00000510852 KDM5DQ9BY66 1539 aa13.13□□□□□ -0.31
USP53-207ENST00000510852 FAM43BQ6ZT52 329 aaPredicted RBP13.12□□□□□ -0.31
USP53-207ENST00000510852 REREQ9P2R6 1566 aa13.12□□□□□ -0.31
USP53-207ENST00000510852 ERICH6BQ5W0A0 696 aa13.11□□□□□ -0.31
USP53-207ENST00000510852 GGT6Q6P531 493 aa13.11□□□□□ -0.31
USP53-207ENST00000510852 DEPDC5O75140 1603 aa13.11□□□□□ -0.31
USP53-207ENST00000510852 WWC1Q8IX03 1113 aa13.1□□□□□ -0.31
USP53-207ENST00000510852 SECISBP2LQ93073 1101 aaKnown RBP13.1□□□□□ -0.31
USP53-207ENST00000510852 FAM135AQ9P2D6 1515 aa13.1□□□□□ -0.31
USP53-207ENST00000510852 MAPK8IP2Q13387 824 aaPredicted RBP13.1□□□□□ -0.31
USP53-207ENST00000510852 BCORL1Q5H9F3 1711 aa13.1□□□□□ -0.31
USP53-207ENST00000510852 KANK1Q14678 1352 aa13.1□□□□□ -0.31
USP53-207ENST00000510852 AGLP35573 1532 aa13.1□□□□□ -0.31
USP53-207ENST00000510852 MROH1Q8NDA8 1641 aa13.09□□□□□ -0.31
USP53-207ENST00000510852 RNF17Q9BXT8 1623 aaKnown RBP13.09□□□□□ -0.31
USP53-207ENST00000510852 PRDM15P57071 1507 aaPredicted RBP13.09□□□□□ -0.31
USP53-207ENST00000510852 LOC102724159A0A0B4J2E5 919 aa13.09□□□□□ -0.31
USP53-207ENST00000510852 DEKP35659 375 aaKnown RBP13.09□□□□□ -0.31
USP53-207ENST00000510852 PWP2Q15269 919 aaKnown RBP13.09□□□□□ -0.31
USP53-207ENST00000510852 FOXD1Q16676 465 aa13.09□□□□□ -0.31
USP53-207ENST00000510852 ZC3H15Q8WU90 426 aaKnown RBP13.09□□□□□ -0.31
USP53-207ENST00000510852 IQGAP3Q86VI3 1631 aa13.08□□□□□ -0.32
USP53-207ENST00000510852 SIGLEC1Q9BZZ2 1709 aa13.08□□□□□ -0.32
USP53-207ENST00000510852 RNF216Q9NWF9 866 aaPredicted RBP13.08□□□□□ -0.32
USP53-207ENST00000510852 VWDEQ8N2E2 1590 aa13.07□□□□□ -0.32
USP53-207ENST00000510852 GPATCH11Q8N954 259 aa13.05□□□□□ -0.32
USP53-207ENST00000510852 WASHC2CQ9Y4E1 1318 aa13.05□□□□□ -0.32
USP53-207ENST00000510852 MLECQ14165 292 aa13.05□□□□□ -0.32
USP53-207ENST00000510852 IL27Q8NEV9 243 aa13.05□□□□□ -0.32
USP53-207ENST00000510852 KCNG1Q9UIX4 513 aa13.05□□□□□ -0.32
USP53-207ENST00000510852 MCCP23508 829 aa13.04□□□□□ -0.32
USP53-207ENST00000510852 DNAJC2Q99543 621 aaKnown RBP13.04□□□□□ -0.32
USP53-207ENST00000510852 SMARCA5O60264 1052 aaPredicted RBP13.04□□□□□ -0.32
USP53-207ENST00000510852 EXOC8Q8IYI6 725 aa13.04□□□□□ -0.32
USP53-207ENST00000510852 LMTK2Q8IWU2 1503 aa13.03□□□□□ -0.32
USP53-207ENST00000510852 ANKRD30BQ9BXX2 1392 aa13.03□□□□□ -0.32
USP53-207ENST00000510852 ABCC3O15438 1527 aa13.03□□□□□ -0.32
USP53-207ENST00000510852 SIN3AQ96ST3 1273 aa13.03□□□□□ -0.32
USP53-207ENST00000510852 IRF5Q13568 498 aa13.02□□□□□ -0.32
USP53-207ENST00000510852 FBXW7Q969H0 707 aa13.02□□□□□ -0.32
USP53-207ENST00000510852 RIPOR2Q9Y4F9 1068 aa13.02□□□□□ -0.33
USP53-207ENST00000510852 BRD1O95696 1058 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms