RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 WASHC2CQ9Y4E1 1318 aa14.96□□□□□ -0.01
NUP54-203ENST00000504173 UNC13BO14795 1591 aa14.96□□□□□ -0.01
NUP54-203ENST00000504173 KANK1Q14678 1352 aa14.96□□□□□ -0.02
NUP54-203ENST00000504173 RGS12O14924 1447 aa14.94□□□□□ -0.02
NUP54-203ENST00000504173 LTKP29376 864 aa14.94□□□□□ -0.02
NUP54-203ENST00000504173 UBR1Q8IWV7 1749 aa14.93□□□□□ -0.02
NUP54-203ENST00000504173 SLAIN2Q9P270 581 aa14.93□□□□□ -0.02
NUP54-203ENST00000504173 RAB3GAP2Q9H2M9 1393 aa14.93□□□□□ -0.02
NUP54-203ENST00000504173 ABCC3O15438 1527 aa14.92□□□□□ -0.02
NUP54-203ENST00000504173 KCNA6P17658 529 aa14.92□□□□□ -0.02
NUP54-203ENST00000504173 NUP155O75694 1391 aa14.92□□□□□ -0.02
NUP54-203ENST00000504173 SHPRHQ149N8 1683 aa14.92□□□□□ -0.02
NUP54-203ENST00000504173 CEP152O94986 1710 aa14.92□□□□□ -0.02
NUP54-203ENST00000504173 NKTRP30414 1462 aaKnown RBP14.9□□□□□ -0.02
NUP54-203ENST00000504173 ERVK-7P63135 1459 aa14.9□□□□□ -0.02
NUP54-203ENST00000504173 TXNDC2Q86VQ3 553 aa14.9□□□□□ -0.02
NUP54-203ENST00000504173 PCGF6Q9BYE7 350 aa14.9□□□□□ -0.02
NUP54-203ENST00000504173 ACIN1Q9UKV3 1341 aaKnown RBP14.9□□□□□ -0.02
NUP54-203ENST00000504173 MSH6P52701 1360 aa14.89□□□□□ -0.03
NUP54-203ENST00000504173 ATAD2Q6PL18 1390 aa14.89□□□□□ -0.03
NUP54-203ENST00000504173 IQGAP3Q86VI3 1631 aa14.89□□□□□ -0.03
NUP54-203ENST00000504173 LMTK2Q8IWU2 1503 aa14.88□□□□□ -0.03
NUP54-203ENST00000504173 PROSER2Q86WR7 435 aaPredicted RBP14.88□□□□□ -0.03
NUP54-203ENST00000504173 AHDC1Q5TGY3 1603 aaPredicted RBP14.88□□□□□ -0.03
NUP54-203ENST00000504173 NWD1Q149M9 1564 aa14.87□□□□□ -0.03
NUP54-203ENST00000504173 RBM6P78332 1123 aaKnown RBP14.87□□□□□ -0.03
NUP54-203ENST00000504173 AFF2P51816 1311 aa14.87□□□□□ -0.03
NUP54-203ENST00000504173 HRCP23327 699 aa14.86□□□□□ -0.03
NUP54-203ENST00000504173 EID1Q9Y6B2 187 aa14.86□□□□□ -0.03
NUP54-203ENST00000504173 TET3O43151 1660 aa14.86□□□□□ -0.03
NUP54-203ENST00000504173 NUTM2BA6NNL0 878 aaPredicted RBP14.85□□□□□ -0.03
NUP54-203ENST00000504173 NUTM2EB1AL46 878 aaPredicted RBP14.85□□□□□ -0.03
NUP54-203ENST00000504173 NUTM2DQ5VT03 806 aaPredicted RBP14.85□□□□□ -0.03
NUP54-203ENST00000504173 NUTM2AQ8IVF1 878 aaPredicted RBP14.85□□□□□ -0.03
NUP54-203ENST00000504173 RBM33Q96EV2 1170 aaKnown RBP14.85□□□□□ -0.03
NUP54-203ENST00000504173 EFCAB6Q5THR3 1501 aa14.85□□□□□ -0.03
NUP54-203ENST00000504173 LRP5O75197 1615 aa14.84□□□□□ -0.03
NUP54-203ENST00000504173 ARHGAP31Q2M1Z3 1444 aa14.83□□□□□ -0.03
NUP54-203ENST00000504173 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.04
NUP54-203ENST00000504173 DIP2AQ14689 1571 aa14.82□□□□□ -0.04
NUP54-203ENST00000504173 TMEM2Q9UHN6 1383 aa14.82□□□□□ -0.04
NUP54-203ENST00000504173 EP400Q96L91 3159 aa14.81□□□□□ -0.04
NUP54-203ENST00000504173 CCDC125Q86Z20 511 aa14.81□□□□□ -0.04
NUP54-203ENST00000504173 KDM5AP29375 1690 aaKnown RBP14.81□□□□□ -0.04
NUP54-203ENST00000504173 MPHOSPH9Q99550 1183 aa14.8□□□□□ -0.04
NUP54-203ENST00000504173 QTRT2Q9H974 415 aaKnown RBP14.8□□□□□ -0.04
NUP54-203ENST00000504173 NCOA3Q9Y6Q9 1424 aa14.8□□□□□ -0.04
NUP54-203ENST00000504173 RPRD2Q5VT52 1461 aaKnown RBP14.8□□□□□ -0.04
NUP54-203ENST00000504173 E9PCH4 1651 aa14.8□□□□□ -0.04
NUP54-203ENST00000504173 CFAP65Q6ZU64 1925 aaKnown RBP14.78□□□□□ -0.04
NUP54-203ENST00000504173 NGLY1Q96IV0 654 aa14.78□□□□□ -0.04
NUP54-203ENST00000504173 NOS1P29475 1434 aa14.75□□□□□ -0.05
NUP54-203ENST00000504173 SLC26A8Q96RN1 970 aa14.74□□□□□ -0.05
NUP54-203ENST00000504173 SPHKAPQ2M3C7 1700 aa14.73□□□□□ -0.05
NUP54-203ENST00000504173 IFFO2Q5TF58 517 aa14.72□□□□□ -0.05
NUP54-203ENST00000504173 PIK3C2BO00750 1634 aa14.71□□□□□ -0.05
NUP54-203ENST00000504173 CADPS2Q86UW7 1296 aa14.71□□□□□ -0.05
NUP54-203ENST00000504173 C8orf37Q96NL8 207 aa14.71□□□□□ -0.05
NUP54-203ENST00000504173 NHSL1Q5SYE7 1610 aa14.7□□□□□ -0.06
NUP54-203ENST00000504173 TRPM2O94759 1503 aa14.7□□□□□ -0.06
NUP54-203ENST00000504173 SLC52A1Q9NWF4 448 aa14.69□□□□□ -0.06
NUP54-203ENST00000504173 DHX57Q6P158 1386 aaKnown RBP14.69□□□□□ -0.06
NUP54-203ENST00000504173 BRINP3Q76B58 766 aa14.68□□□□□ -0.06
NUP54-203ENST00000504173 IDI1Q13907 227 aa14.67□□□□□ -0.06
NUP54-203ENST00000504173 CCDC144AA2RUR9 1427 aa14.66□□□□□ -0.06
NUP54-203ENST00000504173 CHD2O14647 1828 aaKnown RBP14.66□□□□□ -0.06
NUP54-203ENST00000504173 C19orf44Q9H6X5 657 aa14.66□□□□□ -0.06
NUP54-203ENST00000504173 STAG3Q9UJ98 1225 aa14.66□□□□□ -0.06
NUP54-203ENST00000504173 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.66□□□□□ -0.06
NUP54-203ENST00000504173 CLTCL1P53675 1640 aa14.66□□□□□ -0.06
NUP54-203ENST00000504173 ANKRD30BQ9BXX2 1392 aa14.65□□□□□ -0.06
NUP54-203ENST00000504173 LRRC59Q96AG4 307 aaKnown RBP14.65□□□□□ -0.06
NUP54-203ENST00000504173 BLMP54132 1417 aaPredicted RBP14.65□□□□□ -0.06
NUP54-203ENST00000504173 PNPLA6Q8IY17 1366 aa14.64□□□□□ -0.07
NUP54-203ENST00000504173 CHGAP10645 457 aaKnown RBP14.64□□□□□ -0.07
NUP54-203ENST00000504173 ATF3P18847 181 aa14.64□□□□□ -0.07
NUP54-203ENST00000504173 TRPC5Q9UL62 973 aaPredicted RBP14.64□□□□□ -0.07
NUP54-203ENST00000504173 ADGRB3O60242 1522 aa14.64□□□□□ -0.07
NUP54-203ENST00000504173 ASXL1Q8IXJ9 1541 aa14.64□□□□□ -0.07
NUP54-203ENST00000504173 ATRNO75882 1429 aa14.63□□□□□ -0.07
NUP54-203ENST00000504173 DCCP43146 1447 aa14.62□□□□□ -0.07
NUP54-203ENST00000504173 YY1P25490 414 aa14.61□□□□□ -0.07
NUP54-203ENST00000504173 BCL9LQ86UU0 1499 aa14.61□□□□□ -0.07
NUP54-203ENST00000504173 PLEKHG1Q9ULL1 1385 aa14.6□□□□□ -0.07
NUP54-203ENST00000504173 TMEM131LA2VDJ0 1609 aa14.6□□□□□ -0.07
NUP54-203ENST00000504173 KIF1BO60333 1816 aa14.6□□□□□ -0.07
NUP54-203ENST00000504173 C14orf37Q86TY3 774 aa14.6□□□□□ -0.07
NUP54-203ENST00000504173 FNBP4Q8N3X1 1017 aaPredicted RBP14.6□□□□□ -0.07
NUP54-203ENST00000504173 USP21Q9UK80 565 aa14.6□□□□□ -0.07
NUP54-203ENST00000504173 MYO5BQ9ULV0 1848 aa14.58□□□□□ -0.08
NUP54-203ENST00000504173 CCER1Q8TC90 406 aaPredicted RBP14.58□□□□□ -0.08
NUP54-203ENST00000504173 TBX22Q9Y458 520 aa14.58□□□□□ -0.08
NUP54-203ENST00000504173 ZNF326Q5BKZ1 582 aaKnown RBP14.57□□□□□ -0.08
NUP54-203ENST00000504173 ZFYVE9O95405 1425 aa14.57□□□□□ -0.08
NUP54-203ENST00000504173 PIK3R4Q99570 1358 aa14.56□□□□□ -0.08
NUP54-203ENST00000504173 PTCH1Q13635 1447 aa14.56□□□□□ -0.08
NUP54-203ENST00000504173 SPATA31E1Q6ZUB1 1445 aa14.56□□□□□ -0.08
NUP54-203ENST00000504173 ADAMTS2O95450 1211 aa14.55□□□□□ -0.08
NUP54-203ENST00000504173 RGL3Q3MIN7 710 aa14.55□□□□□ -0.08
NUP54-203ENST00000504173 DEFB132Q7Z7B7 95 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms