RNA–Protein interactions for RNA: ENST00000495426.1

BBS9-213, Transcript of Bardet-Biedl syndrome 9, human

TSL 3

Gene BBS9, Length 481 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS9-213	ENST00000495426	VWDE	Q8N2E2	1590 aa		11.7	□□□□□ -0.54
BBS9-213	ENST00000495426	PZP	P20742	1482 aa		11.7	□□□□□ -0.54
BBS9-213	ENST00000495426	MBD5	Q9P267	1494 aa		11.7	□□□□□ -0.54
BBS9-213	ENST00000495426	TNR	Q92752	1358 aa		11.69	□□□□□ -0.54
BBS9-213	ENST00000495426	DEPDC5	O75140	1603 aa		11.69	□□□□□ -0.54
BBS9-213	ENST00000495426	SPRYD3	Q8NCJ5	442 aa		11.69	□□□□□ -0.54
BBS9-213	ENST00000495426	STRCP1	A6NGW2	1772 aa		11.69	□□□□□ -0.54
BBS9-213	ENST00000495426	SHANK2	Q9UPX8	1470 aa		11.69	□□□□□ -0.54
BBS9-213	ENST00000495426	ALK	Q9UM73	1620 aa		11.68	□□□□□ -0.54
BBS9-213	ENST00000495426	SYNM	O15061	1565 aa		11.68	□□□□□ -0.54
BBS9-213	ENST00000495426	CCDC141	Q6ZP82	1450 aa		11.68	□□□□□ -0.54
BBS9-213	ENST00000495426	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.68	□□□□□ -0.54
BBS9-213	ENST00000495426	RNF17	Q9BXT8	1623 aa	Known RBP	11.68	□□□□□ -0.54
BBS9-213	ENST00000495426	STK25	O00506	426 aa		11.67	□□□□□ -0.54
BBS9-213	ENST00000495426	HSPA1L	P34931	641 aa		11.67	□□□□□ -0.54
BBS9-213	ENST00000495426	CCDC61	Q9Y6R9	512 aa		11.67	□□□□□ -0.54
BBS9-213	ENST00000495426	ZC3H13	Q5T200	1668 aa	Known RBP	11.67	□□□□□ -0.54
BBS9-213	ENST00000495426	UGGT1	Q9NYU2	1555 aa		11.67	□□□□□ -0.54
BBS9-213	ENST00000495426	CFAP65	Q6ZU64	1925 aa	Known RBP	11.66	□□□□□ -0.54
BBS9-213	ENST00000495426	ZNF644	Q9H582	1327 aa	Predicted RBP	11.66	□□□□□ -0.54
BBS9-213	ENST00000495426	CAMSAP2	Q08AD1	1489 aa		11.66	□□□□□ -0.54
BBS9-213	ENST00000495426	PIP4K2B	P78356	416 aa		11.66	□□□□□ -0.54
BBS9-213	ENST00000495426	DHX29	Q7Z478	1369 aa	Known RBP	11.66	□□□□□ -0.54
BBS9-213	ENST00000495426	NLRP1	Q9C000	1473 aa		11.65	□□□□□ -0.54
BBS9-213	ENST00000495426	CEP162	Q5TB80	1403 aa		11.65	□□□□□ -0.54
BBS9-213	ENST00000495426	CEP152	O94986	1710 aa		11.65	□□□□□ -0.54
BBS9-213	ENST00000495426	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.64	□□□□□ -0.55
BBS9-213	ENST00000495426	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.64	□□□□□ -0.55
BBS9-213	ENST00000495426	ZFP91	Q96JP5	570 aa	Predicted RBP	11.64	□□□□□ -0.55
BBS9-213	ENST00000495426	SGIP1	Q9BQI5	828 aa		11.64	□□□□□ -0.55
BBS9-213	ENST00000495426	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
BBS9-213	ENST00000495426	MED14	O60244	1454 aa		11.63	□□□□□ -0.55
BBS9-213	ENST00000495426	ARHGEF5	Q12774	1597 aa		11.63	□□□□□ -0.55
BBS9-213	ENST00000495426	NPHP4	O75161	1426 aa	Predicted RBP	11.63	□□□□□ -0.55
BBS9-213	ENST00000495426	TOM1	O60784	492 aa		11.63	□□□□□ -0.55
BBS9-213	ENST00000495426	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.62	□□□□□ -0.55
BBS9-213	ENST00000495426	KIF3B	O15066	747 aa		11.62	□□□□□ -0.55
BBS9-213	ENST00000495426	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.62	□□□□□ -0.55
BBS9-213	ENST00000495426	UBR1	Q8IWV7	1749 aa		11.62	□□□□□ -0.55
BBS9-213	ENST00000495426	XIRP1	Q702N8	1843 aa	Known RBP	11.62	□□□□□ -0.55
BBS9-213	ENST00000495426	STK24	Q9Y6E0	443 aa		11.61	□□□□□ -0.55
BBS9-213	ENST00000495426	NCOA2	Q15596	1464 aa		11.61	□□□□□ -0.55
BBS9-213	ENST00000495426	MIA2	Q96PC5	1412 aa		11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	ABCC3	O15438	1527 aa		11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	CD44	P16070	742 aa	Known RBP	11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	ZRANB1	Q9UGI0	708 aa		11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	PCDHB8	Q9UN66	801 aa		11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	PCDHB13	Q9Y5F0	798 aa		11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	MROH1	Q8NDA8	1641 aa		11.6	□□□□□ -0.55
BBS9-213	ENST00000495426	MAST1	Q9Y2H9	1570 aa		11.59	□□□□□ -0.55
BBS9-213	ENST00000495426	ANKLE2	Q86XL3	938 aa		11.59	□□□□□ -0.55
BBS9-213	ENST00000495426	LRRC7	Q96NW7	1537 aa		11.59	□□□□□ -0.55
BBS9-213	ENST00000495426	WASHC2C	Q9Y4E1	1318 aa		11.59	□□□□□ -0.55
BBS9-213	ENST00000495426	ERVK-7	P63135	1459 aa		11.58	□□□□□ -0.56
BBS9-213	ENST00000495426	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.57	□□□□□ -0.56
BBS9-213	ENST00000495426	PDAP1	Q13442	181 aa	Known RBP	11.56	□□□□□ -0.56
BBS9-213	ENST00000495426	ZNF579	Q8NAF0	562 aa	Known RBP	11.56	□□□□□ -0.56
BBS9-213	ENST00000495426	MAP3K13	O43283	966 aa		11.55	□□□□□ -0.56
BBS9-213	ENST00000495426	NKX1-1	Q15270	411 aa	Predicted RBP	11.55	□□□□□ -0.56
BBS9-213	ENST00000495426	VSIG10	Q8N0Z9	540 aa		11.55	□□□□□ -0.56
BBS9-213	ENST00000495426	KIF12	Q96FN5	646 aa		11.55	□□□□□ -0.56
BBS9-213	ENST00000495426	CROCC2	H7BZ55	1655 aa		11.55	□□□□□ -0.56
BBS9-213	ENST00000495426	SCAF11	Q99590	1463 aa	Known RBP	11.54	□□□□□ -0.56
BBS9-213	ENST00000495426	SLIT1	O75093	1534 aa		11.52	□□□□□ -0.57
BBS9-213	ENST00000495426	PRDM15	P57071	1507 aa	Predicted RBP	11.52	□□□□□ -0.57
BBS9-213	ENST00000495426	PSEN1	P49768	467 aa		11.52	□□□□□ -0.57
BBS9-213	ENST00000495426	RSPH4A	Q5TD94	716 aa		11.52	□□□□□ -0.57
BBS9-213	ENST00000495426	IFNL1	Q8IU54	200 aa		11.52	□□□□□ -0.57
BBS9-213	ENST00000495426	PIK3C2B	O00750	1634 aa		11.52	□□□□□ -0.57
BBS9-213	ENST00000495426	TSHZ2	Q9NRE2	1034 aa		11.51	□□□□□ -0.57
BBS9-213	ENST00000495426	ARHGAP23	Q9P227	1491 aa		11.51	□□□□□ -0.57
BBS9-213	ENST00000495426	PHF12	Q96QT6	1004 aa		11.5	□□□□□ -0.57
BBS9-213	ENST00000495426	DUOX2	Q9NRD8	1548 aa		11.5	□□□□□ -0.57
BBS9-213	ENST00000495426	KDM5A	P29375	1690 aa	Known RBP	11.49	□□□□□ -0.57
BBS9-213	ENST00000495426	ROBO1	Q9Y6N7	1651 aa		11.49	□□□□□ -0.57
BBS9-213	ENST00000495426	SETD1A	O15047	1707 aa	Known RBP	11.49	□□□□□ -0.57
BBS9-213	ENST00000495426	GTPBP6	O43824	516 aa	Predicted RBP	11.49	□□□□□ -0.57
BBS9-213	ENST00000495426	TSPY4	P0CV99	314 aa		11.49	□□□□□ -0.57
BBS9-213	ENST00000495426	TSPY10	P0CW01	314 aa		11.49	□□□□□ -0.57
BBS9-213	ENST00000495426	C19orf67	A6NJJ6	358 aa		11.48	□□□□□ -0.57
BBS9-213	ENST00000495426	LRRC9	Q6ZRR7	1453 aa		11.48	□□□□□ -0.57
BBS9-213	ENST00000495426	RYDEN	Q9NUL5	291 aa	Known RBP	11.46	□□□□□ -0.57
BBS9-213	ENST00000495426	MAP3K1	Q13233	1512 aa		11.45	□□□□□ -0.58
BBS9-213	ENST00000495426	ARHGAP31	Q2M1Z3	1444 aa		11.45	□□□□□ -0.58
BBS9-213	ENST00000495426	MYO5B	Q9ULV0	1848 aa		11.45	□□□□□ -0.58
BBS9-213	ENST00000495426	NWD1	Q149M9	1564 aa		11.45	□□□□□ -0.58
BBS9-213	ENST00000495426	EFCAB6	Q5THR3	1501 aa		11.45	□□□□□ -0.58
BBS9-213	ENST00000495426	MYOM3	Q5VTT5	1437 aa		11.44	□□□□□ -0.58
BBS9-213	ENST00000495426	PHLPP1	O60346	1717 aa		11.44	□□□□□ -0.58
BBS9-213	ENST00000495426	RGS17	Q9UGC6	210 aa	Predicted RBP	11.44	□□□□□ -0.58
BBS9-213	ENST00000495426	KDM2A	Q9Y2K7	1162 aa		11.44	□□□□□ -0.58
BBS9-213	ENST00000495426	VPS8	Q8N3P4	1428 aa		11.43	□□□□□ -0.58
BBS9-213	ENST00000495426	ERBIN	Q96RT1	1412 aa		11.43	□□□□□ -0.58
BBS9-213	ENST00000495426	LTK	P29376	864 aa		11.43	□□□□□ -0.58
BBS9-213	ENST00000495426	FAM135B	Q49AJ0	1406 aa		11.43	□□□□□ -0.58
BBS9-213	ENST00000495426	PTPN23	Q9H3S7	1636 aa		11.42	□□□□□ -0.58
BBS9-213	ENST00000495426	KIF15	Q9NS87	1388 aa		11.42	□□□□□ -0.58
BBS9-213	ENST00000495426	ADGRB3	O60242	1522 aa		11.42	□□□□□ -0.58
BBS9-213	ENST00000495426	TXNDC2	Q86VQ3	553 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 352.3 ms