RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 FAM135BQ49AJ0 1406 aa10.43□□□□□ -0.74
VPS52-219ENST00000493379 YY1P25490 414 aa10.43□□□□□ -0.74
VPS52-219ENST00000493379 SPRYD3Q8NCJ5 442 aa10.43□□□□□ -0.74
VPS52-219ENST00000493379 SYNMO15061 1565 aa10.43□□□□□ -0.74
VPS52-219ENST00000493379 RTEL1-TNFRSF6BF6WH68 1400 aa10.42□□□□□ -0.74
VPS52-219ENST00000493379 NUTM2BA6NNL0 878 aaPredicted RBP10.42□□□□□ -0.74
VPS52-219ENST00000493379 NUTM2EB1AL46 878 aaPredicted RBP10.42□□□□□ -0.74
VPS52-219ENST00000493379 PRR29P0C7W0 189 aa10.42□□□□□ -0.74
VPS52-219ENST00000493379 NUTM2DQ5VT03 806 aaPredicted RBP10.42□□□□□ -0.74
VPS52-219ENST00000493379 NUTM2AQ8IVF1 878 aaPredicted RBP10.42□□□□□ -0.74
VPS52-219ENST00000493379 REM2Q8IYK8 340 aaPredicted RBP10.42□□□□□ -0.74
VPS52-219ENST00000493379 CREBZFQ9NS37 354 aa10.42□□□□□ -0.74
VPS52-219ENST00000493379 A2ML1A8K2U0 1454 aa10.42□□□□□ -0.74
VPS52-219ENST00000493379 CDK12Q9NYV4 1490 aaPredicted RBP10.42□□□□□ -0.74
VPS52-219ENST00000493379 LRP5O75197 1615 aa10.41□□□□□ -0.74
VPS52-219ENST00000493379 MEX3CQ5U5Q3 659 aaKnown RBP10.41□□□□□ -0.74
VPS52-219ENST00000493379 RNF25Q96BH1 459 aaPredicted RBP10.41□□□□□ -0.74
VPS52-219ENST00000493379 ZNF777Q9ULD5 760 aaPredicted RBP10.41□□□□□ -0.74
VPS52-219ENST00000493379 KDM2AQ9Y2K7 1162 aa10.41□□□□□ -0.74
VPS52-219ENST00000493379 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS52-219ENST00000493379 SENP3-EIF4A1A0A087X0R7 540 aa10.4□□□□□ -0.74
VPS52-219ENST00000493379 MNX1P50219 401 aaPredicted RBP10.4□□□□□ -0.74
VPS52-219ENST00000493379 ITSN2Q9NZM3 1697 aa10.4□□□□□ -0.74
VPS52-219ENST00000493379 NPHP4O75161 1426 aaPredicted RBP10.4□□□□□ -0.75
VPS52-219ENST00000493379 FGD6Q6ZV73 1430 aa10.4□□□□□ -0.75
VPS52-219ENST00000493379 PHLPP1O60346 1717 aa10.39□□□□□ -0.75
VPS52-219ENST00000493379 BCANQ96GW7 911 aa10.39□□□□□ -0.75
VPS52-219ENST00000493379 SYCP2Q9BX26 1530 aa10.38□□□□□ -0.75
VPS52-219ENST00000493379 SPAG9O60271 1321 aaKnown RBP10.38□□□□□ -0.75
VPS52-219ENST00000493379 CAMSAP2Q08AD1 1489 aa10.38□□□□□ -0.75
VPS52-219ENST00000493379 HS6ST3Q8IZP7 471 aa10.38□□□□□ -0.75
VPS52-219ENST00000493379 ARHGEF5Q12774 1597 aa10.38□□□□□ -0.75
VPS52-219ENST00000493379 JCADQ9P266 1359 aa10.38□□□□□ -0.75
VPS52-219ENST00000493379 DCAF8Q5TAQ9 597 aa10.37□□□□□ -0.75
VPS52-219ENST00000493379 IQGAP1P46940 1657 aa10.37□□□□□ -0.75
VPS52-219ENST00000493379 CCDC141Q6ZP82 1450 aa10.36□□□□□ -0.75
VPS52-219ENST00000493379 TSPY4P0CV99 314 aa10.36□□□□□ -0.75
VPS52-219ENST00000493379 TSPY10P0CW01 314 aa10.36□□□□□ -0.75
VPS52-219ENST00000493379 ANKLE2Q86XL3 938 aa10.36□□□□□ -0.75
VPS52-219ENST00000493379 EP400Q96L91 3159 aa10.36□□□□□ -0.75
VPS52-219ENST00000493379 ABCC5O15440 1437 aa10.35□□□□□ -0.75
VPS52-219ENST00000493379 FAM212AQ96EL1 285 aa10.34□□□□□ -0.75
VPS52-219ENST00000493379 TSHZ2Q9NRE2 1034 aa10.34□□□□□ -0.75
VPS52-219ENST00000493379 DHX29Q7Z478 1369 aaKnown RBP10.34□□□□□ -0.75
VPS52-219ENST00000493379 MED14O60244 1454 aa10.34□□□□□ -0.75
VPS52-219ENST00000493379 KIDINS220Q9ULH0 1771 aa10.34□□□□□ -0.75
VPS52-219ENST00000493379 RRBP1Q9P2E9 1410 aaKnown RBP10.33□□□□□ -0.76
VPS52-219ENST00000493379 MAST1Q9Y2H9 1570 aa10.33□□□□□ -0.76
VPS52-219ENST00000493379 PTPN23Q9H3S7 1636 aa10.33□□□□□ -0.76
VPS52-219ENST00000493379 INO80Q9ULG1 1556 aaPredicted RBP10.32□□□□□ -0.76
VPS52-219ENST00000493379 RIOK3O14730 519 aaKnown RBP10.32□□□□□ -0.76
VPS52-219ENST00000493379 DEPDC5O75140 1603 aa10.32□□□□□ -0.76
VPS52-219ENST00000493379 COL16A1Q07092 1604 aaPredicted RBP10.32□□□□□ -0.76
VPS52-219ENST00000493379 ATP7AQ04656 1500 aa10.32□□□□□ -0.76
VPS52-219ENST00000493379 AFF2P51816 1311 aa10.32□□□□□ -0.76
VPS52-219ENST00000493379 ATAD2Q6PL18 1390 aa10.31□□□□□ -0.76
VPS52-219ENST00000493379 DAPK1P53355 1430 aa10.31□□□□□ -0.76
VPS52-219ENST00000493379 A2MP01023 1474 aa10.3□□□□□ -0.76
VPS52-219ENST00000493379 PITPNM1O00562 1244 aa10.3□□□□□ -0.76
VPS52-219ENST00000493379 RASEFQ8IZ41 740 aa10.3□□□□□ -0.76
VPS52-219ENST00000493379 TAOK2Q9UL54 1235 aa10.3□□□□□ -0.76
VPS52-219ENST00000493379 ZC3H13Q5T200 1668 aaKnown RBP10.29□□□□□ -0.76
VPS52-219ENST00000493379 CHRM1P11229 460 aaPredicted RBP10.29□□□□□ -0.76
VPS52-219ENST00000493379 FBXO31Q5XUX0 539 aaPredicted RBP10.29□□□□□ -0.76
VPS52-219ENST00000493379 PPARGC1BQ86YN6 1023 aaKnown RBP10.29□□□□□ -0.76
VPS52-219ENST00000493379 PLXNC1O60486 1568 aa10.29□□□□□ -0.76
VPS52-219ENST00000493379 ADGRL2O95490 1459 aa10.29□□□□□ -0.76
VPS52-219ENST00000493379 ROCK1Q13464 1354 aa10.28□□□□□ -0.76
VPS52-219ENST00000493379 PSDA5PKW4 1024 aaPredicted RBP10.28□□□□□ -0.76
VPS52-219ENST00000493379 SPATA31A6Q5VVP1 1343 aa10.28□□□□□ -0.76
VPS52-219ENST00000493379 RBM6P78332 1123 aaKnown RBP10.27□□□□□ -0.77
VPS52-219ENST00000493379 QTRT2Q9H974 415 aaKnown RBP10.27□□□□□ -0.77
VPS52-219ENST00000493379 CEP350Q5VT06 3117 aa10.27□□□□□ -0.77
VPS52-219ENST00000493379 ANKRD30AQ9BXX3 1397 aa10.26□□□□□ -0.77
VPS52-219ENST00000493379 FAM50AQ14320 339 aaKnown RBP10.26□□□□□ -0.77
VPS52-219ENST00000493379 GGT6Q6P531 493 aa10.26□□□□□ -0.77
VPS52-219ENST00000493379 TNRQ92752 1358 aa10.26□□□□□ -0.77
VPS52-219ENST00000493379 NKX1-1Q15270 411 aaPredicted RBP10.25□□□□□ -0.77
VPS52-219ENST00000493379 TMEM94Q12767 1356 aa10.25□□□□□ -0.77
VPS52-219ENST00000493379 DUOX2Q9NRD8 1548 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 VGFO15240 615 aaPredicted RBP10.24□□□□□ -0.77
VPS52-219ENST00000493379 DEFB132Q7Z7B7 95 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 NHSL1Q5SYE7 1610 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 SHPRHQ149N8 1683 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 ADGBQ8N7X0 1667 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 KIF15Q9NS87 1388 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 ERBINQ96RT1 1412 aa10.24□□□□□ -0.77
VPS52-219ENST00000493379 UGGT1Q9NYU2 1555 aa10.23□□□□□ -0.77
VPS52-219ENST00000493379 KIF3BO15066 747 aa10.23□□□□□ -0.77
VPS52-219ENST00000493379 HRCP23327 699 aa10.23□□□□□ -0.77
VPS52-219ENST00000493379 THEMISQ8N1K5 641 aaPredicted RBP10.23□□□□□ -0.77
VPS52-219ENST00000493379 RRP7BPQ9NSQ0 103 aa10.23□□□□□ -0.77
VPS52-219ENST00000493379 FAM135AQ9P2D6 1515 aa10.23□□□□□ -0.77
VPS52-219ENST00000493379 CHIC2Q9UKJ5 165 aa10.22□□□□□ -0.77
VPS52-219ENST00000493379 STK25O00506 426 aa10.21□□□□□ -0.77
VPS52-219ENST00000493379 KDM5DQ9BY66 1539 aa10.21□□□□□ -0.78
VPS52-219ENST00000493379 CROCC2H7BZ55 1655 aa10.21□□□□□ -0.78
VPS52-219ENST00000493379 SGIP1Q9BQI5 828 aa10.2□□□□□ -0.78
VPS52-219ENST00000493379 EIF2AK4Q9P2K8 1649 aaKnown RBP10.19□□□□□ -0.78
VPS52-219ENST00000493379 ANKRD50Q9ULJ7 1429 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms