RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SLC52A1Q9NWF4 448 aa15.06■□□□□ 0
SKA1-204ENST00000488454 STAG3Q9UJ98 1225 aa15.05■□□□□ -0
SKA1-204ENST00000488454 C3P01024 1663 aa15.05■□□□□ -0
SKA1-204ENST00000488454 ERVK-7P63135 1459 aa15.04■□□□□ -0
SKA1-204ENST00000488454 NOS1P29475 1434 aa15.02■□□□□ -0
SKA1-204ENST00000488454 CHGAP10645 457 aaKnown RBP15.02■□□□□ -0
SKA1-204ENST00000488454 IDI1Q13907 227 aa15.02■□□□□ -0
SKA1-204ENST00000488454 PTPRTO14522 1441 aa15□□□□□ -0.01
SKA1-204ENST00000488454 UHRF1BP1Q6BDS2 1440 aa15□□□□□ -0.01
SKA1-204ENST00000488454 E9PCH4 1651 aa15□□□□□ -0.01
SKA1-204ENST00000488454 SPATA31D1Q6ZQQ2 1576 aa15□□□□□ -0.01
SKA1-204ENST00000488454 POTEHQ6S545 545 aa15□□□□□ -0.01
SKA1-204ENST00000488454 DHX57Q6P158 1386 aaKnown RBP14.99□□□□□ -0.01
SKA1-204ENST00000488454 THEMISQ8N1K5 641 aaPredicted RBP14.99□□□□□ -0.01
SKA1-204ENST00000488454 CCER1Q8TC90 406 aaPredicted RBP14.99□□□□□ -0.01
SKA1-204ENST00000488454 NLRP1Q9C000 1473 aa14.99□□□□□ -0.01
SKA1-204ENST00000488454 CFAP65Q6ZU64 1925 aaKnown RBP14.99□□□□□ -0.01
SKA1-204ENST00000488454 FXR2P51116 673 aaKnown RBP eCLIP14.98□□□□□ -0.01
SKA1-204ENST00000488454 PIP4P2Q8N4L2 257 aa14.98□□□□□ -0.01
SKA1-204ENST00000488454 CCDC144AA2RUR9 1427 aa14.98□□□□□ -0.01
SKA1-204ENST00000488454 SETD1BQ9UPS6 1966 aaKnown RBP14.98□□□□□ -0.01
SKA1-204ENST00000488454 PREX1Q8TCU6 1659 aa14.97□□□□□ -0.01
SKA1-204ENST00000488454 ANKRD30BQ9BXX2 1392 aa14.97□□□□□ -0.01
SKA1-204ENST00000488454 PLA2R1Q13018 1463 aa14.96□□□□□ -0.01
SKA1-204ENST00000488454 HDGFP51858 240 aaKnown RBP14.95□□□□□ -0.02
SKA1-204ENST00000488454 ZNF326Q5BKZ1 582 aaKnown RBP14.95□□□□□ -0.02
SKA1-204ENST00000488454 A2ML1A8K2U0 1454 aa14.95□□□□□ -0.02
SKA1-204ENST00000488454 TRPM2O94759 1503 aa14.94□□□□□ -0.02
SKA1-204ENST00000488454 PRR29P0C7W0 189 aa14.94□□□□□ -0.02
SKA1-204ENST00000488454 NEUROD1Q13562 356 aa14.93□□□□□ -0.02
SKA1-204ENST00000488454 SYNMO15061 1565 aa14.93□□□□□ -0.02
SKA1-204ENST00000488454 SPHKAPQ2M3C7 1700 aa14.92□□□□□ -0.02
SKA1-204ENST00000488454 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
SKA1-204ENST00000488454 EID1Q9Y6B2 187 aa14.92□□□□□ -0.02
SKA1-204ENST00000488454 UGGT1Q9NYU2 1555 aa14.91□□□□□ -0.02
SKA1-204ENST00000488454 HSPA2P54652 639 aa14.91□□□□□ -0.02
SKA1-204ENST00000488454 CLSPNQ9HAW4 1339 aa14.91□□□□□ -0.02
SKA1-204ENST00000488454 ANKLE2Q86XL3 938 aa14.9□□□□□ -0.02
SKA1-204ENST00000488454 SIN3AQ96ST3 1273 aa14.9□□□□□ -0.02
SKA1-204ENST00000488454 MYO3AQ8NEV4 1616 aa14.9□□□□□ -0.02
SKA1-204ENST00000488454 CEP170BQ9Y4F5 1589 aaPredicted RBP14.9□□□□□ -0.02
SKA1-204ENST00000488454 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.89□□□□□ -0.03
SKA1-204ENST00000488454 TXNDC2Q86VQ3 553 aa14.88□□□□□ -0.03
SKA1-204ENST00000488454 RPGRIP1LQ68CZ1 1315 aa14.88□□□□□ -0.03
SKA1-204ENST00000488454 LMTK3Q96Q04 1460 aa14.88□□□□□ -0.03
SKA1-204ENST00000488454 PPP1R15AO75807 674 aaPredicted RBP14.87□□□□□ -0.03
SKA1-204ENST00000488454 TMEM2Q9UHN6 1383 aa14.86□□□□□ -0.03
SKA1-204ENST00000488454 PIK3C2BO00750 1634 aa14.86□□□□□ -0.03
SKA1-204ENST00000488454 CLTCL1P53675 1640 aa14.86□□□□□ -0.03
SKA1-204ENST00000488454 BCANQ96GW7 911 aa14.86□□□□□ -0.03
SKA1-204ENST00000488454 ADGRB3O60242 1522 aa14.86□□□□□ -0.03
SKA1-204ENST00000488454 VGFO15240 615 aaPredicted RBP14.85□□□□□ -0.03
SKA1-204ENST00000488454 NUTM2DQ5VT03 806 aaPredicted RBP14.84□□□□□ -0.03
SKA1-204ENST00000488454 NCKAP5LQ9HCH0 1330 aa14.84□□□□□ -0.03
SKA1-204ENST00000488454 RIMS2Q9UQ26 1411 aa14.83□□□□□ -0.03
SKA1-204ENST00000488454 STAC3Q96MF2 364 aa14.83□□□□□ -0.04
SKA1-204ENST00000488454 TMEM131LA2VDJ0 1609 aa14.83□□□□□ -0.04
SKA1-204ENST00000488454 ZNF142P52746 1687 aaPredicted RBP14.83□□□□□ -0.04
SKA1-204ENST00000488454 SPATA31E1Q6ZUB1 1445 aa14.83□□□□□ -0.04
SKA1-204ENST00000488454 PRKAR2AP13861 404 aaKnown RBP14.82□□□□□ -0.04
SKA1-204ENST00000488454 LTKP29376 864 aa14.82□□□□□ -0.04
SKA1-204ENST00000488454 DCAF11Q8TEB1 546 aa14.82□□□□□ -0.04
SKA1-204ENST00000488454 KDM2AQ9Y2K7 1162 aa14.82□□□□□ -0.04
SKA1-204ENST00000488454 UBR1Q8IWV7 1749 aa14.81□□□□□ -0.04
SKA1-204ENST00000488454 KIF1BO60333 1816 aa14.81□□□□□ -0.04
SKA1-204ENST00000488454 TONSLQ96HA7 1378 aa14.81□□□□□ -0.04
SKA1-204ENST00000488454 KDM5AP29375 1690 aaKnown RBP14.81□□□□□ -0.04
SKA1-204ENST00000488454 SLIT1O75093 1534 aa14.8□□□□□ -0.04
SKA1-204ENST00000488454 L3MBTL2Q969R5 705 aa14.79□□□□□ -0.04
SKA1-204ENST00000488454 ARHGAP23Q9P227 1491 aa14.79□□□□□ -0.04
SKA1-204ENST00000488454 TIMELESSQ9UNS1 1208 aa14.79□□□□□ -0.04
SKA1-204ENST00000488454 NEURL4Q96JN8 1562 aa14.78□□□□□ -0.04
SKA1-204ENST00000488454 SCAF11Q99590 1463 aaKnown RBP14.78□□□□□ -0.04
SKA1-204ENST00000488454 CHADLQ6NUI6 762 aa14.78□□□□□ -0.04
SKA1-204ENST00000488454 ZFYVE9O95405 1425 aa14.77□□□□□ -0.04
SKA1-204ENST00000488454 NPHP4O75161 1426 aaPredicted RBP14.75□□□□□ -0.05
SKA1-204ENST00000488454 PLEKHG1Q9ULL1 1385 aa14.75□□□□□ -0.05
SKA1-204ENST00000488454 ADGRF5Q8IZF2 1346 aa14.75□□□□□ -0.05
SKA1-204ENST00000488454 SLC26A8Q96RN1 970 aa14.74□□□□□ -0.05
SKA1-204ENST00000488454 NEXMIFQ5QGS0 1516 aa14.73□□□□□ -0.05
SKA1-204ENST00000488454 TBX22Q9Y458 520 aa14.73□□□□□ -0.05
SKA1-204ENST00000488454 MYO5BQ9ULV0 1848 aa14.73□□□□□ -0.05
SKA1-204ENST00000488454 MED14O60244 1454 aa14.72□□□□□ -0.05
SKA1-204ENST00000488454 CREBZFQ9NS37 354 aa14.72□□□□□ -0.05
SKA1-204ENST00000488454 MYOM2P54296 1465 aa14.69□□□□□ -0.06
SKA1-204ENST00000488454 CFAP70Q5T0N1 1121 aa14.69□□□□□ -0.06
SKA1-204ENST00000488454 C14orf93Q9H972 538 aaKnown RBP14.69□□□□□ -0.06
SKA1-204ENST00000488454 PPLO60437 1756 aa14.67□□□□□ -0.06
SKA1-204ENST00000488454 STRCQ7RTU9 1775 aa14.67□□□□□ -0.06
SKA1-204ENST00000488454 POLR1AO95602 1720 aaPredicted RBP14.66□□□□□ -0.06
SKA1-204ENST00000488454 FBXO3Q9UK99 471 aa14.66□□□□□ -0.06
SKA1-204ENST00000488454 PIK3C2GO75747 1445 aa14.66□□□□□ -0.06
SKA1-204ENST00000488454 ADAMTS13Q76LX8 1427 aa14.65□□□□□ -0.06
SKA1-204ENST00000488454 PRAG1Q86YV5 1406 aa14.65□□□□□ -0.06
SKA1-204ENST00000488454 IQGAP1P46940 1657 aa14.65□□□□□ -0.06
SKA1-204ENST00000488454 NRXN1Q9ULB1 1477 aa14.64□□□□□ -0.07
SKA1-204ENST00000488454 KCNA6P17658 529 aa14.64□□□□□ -0.07
SKA1-204ENST00000488454 NBPF8Q3BBV2 869 aa14.64□□□□□ -0.07
SKA1-204ENST00000488454 TMEM132EQ6IEE7 984 aa14.64□□□□□ -0.07
SKA1-204ENST00000488454 SETBP1Q9Y6X0 1596 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms