RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PPP1R15AO75807 674 aaPredicted RBP11.86□□□□□ -0.51
USP40-216ENST00000485943 HDGFP51858 240 aaKnown RBP11.86□□□□□ -0.51
USP40-216ENST00000485943 ANKLE2Q86XL3 938 aa11.86□□□□□ -0.51
USP40-216ENST00000485943 A2ML1A8K2U0 1454 aa11.86□□□□□ -0.51
USP40-216ENST00000485943 ERVK-7P63135 1459 aa11.86□□□□□ -0.51
USP40-216ENST00000485943 PKD2Q13563 968 aa11.85□□□□□ -0.51
USP40-216ENST00000485943 EFCAB6Q5THR3 1501 aa11.85□□□□□ -0.51
USP40-216ENST00000485943 NAIPQ13075 1403 aa11.85□□□□□ -0.51
USP40-216ENST00000485943 ZNF142P52746 1687 aaPredicted RBP11.84□□□□□ -0.51
USP40-216ENST00000485943 RPRD2Q5VT52 1461 aaKnown RBP11.84□□□□□ -0.51
USP40-216ENST00000485943 SLC52A1Q9NWF4 448 aa11.84□□□□□ -0.51
USP40-216ENST00000485943 ARHGAP31Q2M1Z3 1444 aa11.84□□□□□ -0.51
USP40-216ENST00000485943 IQGAP3Q86VI3 1631 aa11.83□□□□□ -0.52
USP40-216ENST00000485943 LMTK2Q8IWU2 1503 aa11.83□□□□□ -0.52
USP40-216ENST00000485943 ZNF326Q5BKZ1 582 aaKnown RBP11.83□□□□□ -0.52
USP40-216ENST00000485943 SETD5Q9C0A6 1442 aa11.83□□□□□ -0.52
USP40-216ENST00000485943 SPATA31D1Q6ZQQ2 1576 aa11.83□□□□□ -0.52
USP40-216ENST00000485943 NCKAP5LQ9HCH0 1330 aa11.81□□□□□ -0.52
USP40-216ENST00000485943 POLR1AO95602 1720 aaPredicted RBP11.8□□□□□ -0.52
USP40-216ENST00000485943 VWDEQ8N2E2 1590 aa11.79□□□□□ -0.52
USP40-216ENST00000485943 PLA2R1Q13018 1463 aa11.79□□□□□ -0.52
USP40-216ENST00000485943 TXNDC2Q86VQ3 553 aa11.79□□□□□ -0.52
USP40-216ENST00000485943 E9PCH4 1651 aa11.78□□□□□ -0.52
USP40-216ENST00000485943 SPHKAPQ2M3C7 1700 aa11.78□□□□□ -0.52
USP40-216ENST00000485943 IDI1Q13907 227 aa11.78□□□□□ -0.52
USP40-216ENST00000485943 PIK3C2BO00750 1634 aa11.78□□□□□ -0.52
USP40-216ENST00000485943 RAB3GAP2Q9H2M9 1393 aa11.77□□□□□ -0.53
USP40-216ENST00000485943 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP40-216ENST00000485943 UBR1Q8IWV7 1749 aa11.76□□□□□ -0.53
USP40-216ENST00000485943 KIF1BO60333 1816 aa11.75□□□□□ -0.53
USP40-216ENST00000485943 TRIM26Q12899 539 aaPredicted RBP11.75□□□□□ -0.53
USP40-216ENST00000485943 MPHOSPH9Q99550 1183 aa11.75□□□□□ -0.53
USP40-216ENST00000485943 ADGRB3O60242 1522 aa11.75□□□□□ -0.53
USP40-216ENST00000485943 PTPRTO14522 1441 aa11.74□□□□□ -0.53
USP40-216ENST00000485943 NPHP4O75161 1426 aaPredicted RBP11.74□□□□□ -0.53
USP40-216ENST00000485943 NOS1P29475 1434 aa11.74□□□□□ -0.53
USP40-216ENST00000485943 SCAF11Q99590 1463 aaKnown RBP11.74□□□□□ -0.53
USP40-216ENST00000485943 STRCQ7RTU9 1775 aa11.74□□□□□ -0.53
USP40-216ENST00000485943 CCDC144AA2RUR9 1427 aa11.73□□□□□ -0.53
USP40-216ENST00000485943 SYNMO15061 1565 aa11.73□□□□□ -0.53
USP40-216ENST00000485943 MYO5BQ9ULV0 1848 aa11.72□□□□□ -0.53
USP40-216ENST00000485943 KDM5AP29375 1690 aaKnown RBP11.71□□□□□ -0.53
USP40-216ENST00000485943 IQGAP1P46940 1657 aa11.71□□□□□ -0.53
USP40-216ENST00000485943 TMEM2Q9UHN6 1383 aa11.71□□□□□ -0.53
USP40-216ENST00000485943 NUTM2DQ5VT03 806 aaPredicted RBP11.71□□□□□ -0.53
USP40-216ENST00000485943 RIMS2Q9UQ26 1411 aa11.69□□□□□ -0.54
USP40-216ENST00000485943 RGL3Q3MIN7 710 aa11.69□□□□□ -0.54
USP40-216ENST00000485943 C14orf37Q86TY3 774 aa11.69□□□□□ -0.54
USP40-216ENST00000485943 TRPM2O94759 1503 aa11.69□□□□□ -0.54
USP40-216ENST00000485943 CERKQ8TCT0 537 aa11.68□□□□□ -0.54
USP40-216ENST00000485943 ZNF335Q9H4Z2 1342 aaPredicted RBP11.67□□□□□ -0.54
USP40-216ENST00000485943 SLIT1O75093 1534 aa11.67□□□□□ -0.54
USP40-216ENST00000485943 VGFO15240 615 aaPredicted RBP11.67□□□□□ -0.54
USP40-216ENST00000485943 HRCP23327 699 aa11.67□□□□□ -0.54
USP40-216ENST00000485943 LTKP29376 864 aa11.66□□□□□ -0.54
USP40-216ENST00000485943 SLC26A8Q96RN1 970 aa11.66□□□□□ -0.54
USP40-216ENST00000485943 TMEM131LA2VDJ0 1609 aa11.66□□□□□ -0.54
USP40-216ENST00000485943 CLTCL1P53675 1640 aa11.66□□□□□ -0.54
USP40-216ENST00000485943 SPOCK2Q92563 424 aa11.64□□□□□ -0.55
USP40-216ENST00000485943 MED14O60244 1454 aa11.63□□□□□ -0.55
USP40-216ENST00000485943 ARHGAP23Q9P227 1491 aa11.63□□□□□ -0.55
USP40-216ENST00000485943 RPGRIP1LQ68CZ1 1315 aa11.63□□□□□ -0.55
USP40-216ENST00000485943 NEURL4Q96JN8 1562 aa11.63□□□□□ -0.55
USP40-216ENST00000485943 CPS1P31327 1500 aa11.63□□□□□ -0.55
USP40-216ENST00000485943 PLEKHG1Q9ULL1 1385 aa11.63□□□□□ -0.55
USP40-216ENST00000485943 UBAP1LF5GYI3 381 aa11.62□□□□□ -0.55
USP40-216ENST00000485943 PROSER2Q86WR7 435 aaPredicted RBP11.62□□□□□ -0.55
USP40-216ENST00000485943 KLHL34Q8N239 644 aa11.62□□□□□ -0.55
USP40-216ENST00000485943 TOM1O60784 492 aa11.61□□□□□ -0.55
USP40-216ENST00000485943 FBXO41Q8TF61 875 aa11.61□□□□□ -0.55
USP40-216ENST00000485943 PLCD3Q8N3E9 789 aa11.6□□□□□ -0.55
USP40-216ENST00000485943 PCGF6Q9BYE7 350 aa11.6□□□□□ -0.55
USP40-216ENST00000485943 KDM2AQ9Y2K7 1162 aa11.59□□□□□ -0.55
USP40-216ENST00000485943 DIP2AQ14689 1571 aa11.58□□□□□ -0.55
USP40-216ENST00000485943 ANKRD30BQ9BXX2 1392 aa11.58□□□□□ -0.56
USP40-216ENST00000485943 KCNA6P17658 529 aa11.58□□□□□ -0.56
USP40-216ENST00000485943 PIP4K2BP78356 416 aa11.58□□□□□ -0.56
USP40-216ENST00000485943 NEUROD1Q13562 356 aa11.58□□□□□ -0.56
USP40-216ENST00000485943 ZFYVE9O95405 1425 aa11.58□□□□□ -0.56
USP40-216ENST00000485943 MIER1Q8N108 512 aa11.57□□□□□ -0.56
USP40-216ENST00000485943 TBX22Q9Y458 520 aa11.57□□□□□ -0.56
USP40-216ENST00000485943 MSH6P52701 1360 aa11.56□□□□□ -0.56
USP40-216ENST00000485943 DCAF11Q8TEB1 546 aa11.56□□□□□ -0.56
USP40-216ENST00000485943 PPLO60437 1756 aa11.56□□□□□ -0.56
USP40-216ENST00000485943 IQSEC2Q5JU85 1478 aa11.56□□□□□ -0.56
USP40-216ENST00000485943 AMOTL2Q9Y2J4 779 aa11.55□□□□□ -0.56
USP40-216ENST00000485943 NEXMIFQ5QGS0 1516 aa11.55□□□□□ -0.56
USP40-216ENST00000485943 PIK3R4Q99570 1358 aa11.54□□□□□ -0.56
USP40-216ENST00000485943 ATF3P18847 181 aa11.54□□□□□ -0.56
USP40-216ENST00000485943 ILDR1Q86SU0 546 aaPredicted RBP11.54□□□□□ -0.56
USP40-216ENST00000485943 LTBP4Q8N2S1 1624 aa11.53□□□□□ -0.56
USP40-216ENST00000485943 NKTRP30414 1462 aaKnown RBP11.53□□□□□ -0.56
USP40-216ENST00000485943 STAC3Q96MF2 364 aa11.53□□□□□ -0.56
USP40-216ENST00000485943 STK26Q9P289 416 aa11.53□□□□□ -0.56
USP40-216ENST00000485943 CHD2O14647 1828 aaKnown RBP11.52□□□□□ -0.57
USP40-216ENST00000485943 RBM33Q96EV2 1170 aaKnown RBP11.52□□□□□ -0.57
USP40-216ENST00000485943 TMEM94Q12767 1356 aa11.52□□□□□ -0.57
USP40-216ENST00000485943 SETBP1Q9Y6X0 1596 aa11.51□□□□□ -0.57
USP40-216ENST00000485943 TONSLQ96HA7 1378 aa11.51□□□□□ -0.57
USP40-216ENST00000485943 CCER1Q8TC90 406 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms