RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 E2F4Q16254 413 aa7.91□□□□□ -1.14
PTCD3-213ENST00000480102 ANO8Q9HCE9 1232 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-213ENST00000480102 RAPGEF6Q8TEU7 1601 aa7.9□□□□□ -1.14
PTCD3-213ENST00000480102 CCDC18Q5T9S5 1454 aa7.9□□□□□ -1.14
PTCD3-213ENST00000480102 CD109Q6YHK3 1445 aa7.9□□□□□ -1.14
PTCD3-213ENST00000480102 PLEKHD1A6NEE1 506 aa7.9□□□□□ -1.14
PTCD3-213ENST00000480102 DPYSL4O14531 572 aa7.9□□□□□ -1.14
PTCD3-213ENST00000480102 ZCCHC11Q5TAX3 1644 aaKnown RBP7.89□□□□□ -1.15
PTCD3-213ENST00000480102 CLIP1P30622 1438 aa7.89□□□□□ -1.15
PTCD3-213ENST00000480102 ARAP3Q8WWN8 1544 aa7.88□□□□□ -1.15
PTCD3-213ENST00000480102 NEO1Q92859 1461 aa7.88□□□□□ -1.15
PTCD3-213ENST00000480102 FYCO1Q9BQS8 1478 aa7.88□□□□□ -1.15
PTCD3-213ENST00000480102 PPP4R3BQ5MIZ7 849 aa7.88□□□□□ -1.15
PTCD3-213ENST00000480102 MAP3K4Q9Y6R4 1608 aa7.88□□□□□ -1.15
PTCD3-213ENST00000480102 HAP1P54257 671 aaPredicted RBP7.87□□□□□ -1.15
PTCD3-213ENST00000480102 P3H3Q8IVL6 736 aa7.87□□□□□ -1.15
PTCD3-213ENST00000480102 ARIH1Q9Y4X5 557 aaPredicted RBP7.87□□□□□ -1.15
PTCD3-213ENST00000480102 PBX2P40425 430 aa7.86□□□□□ -1.15
PTCD3-213ENST00000480102 ZNF454Q8N9F8 522 aa7.86□□□□□ -1.15
PTCD3-213ENST00000480102 TROQ12816 1431 aaPredicted RBP7.86□□□□□ -1.15
PTCD3-213ENST00000480102 HECW1Q76N89 1606 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 ABCA9Q8IUA7 1624 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 KIF13AQ9H1H9 1805 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 FOSBP53539 338 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 PDIA6Q15084 440 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 POTEEQ6S8J3 1075 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 PLCH2O75038 1416 aa7.85□□□□□ -1.15
PTCD3-213ENST00000480102 TTBK1Q5TCY1 1321 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-213ENST00000480102 CFAP43Q8NDM7 1665 aa7.84□□□□□ -1.15
PTCD3-213ENST00000480102 CEP162Q5TB80 1403 aa7.84□□□□□ -1.15
PTCD3-213ENST00000480102 MMRN1Q13201 1228 aa7.83□□□□□ -1.16
PTCD3-213ENST00000480102 MAP3K1Q13233 1512 aa7.83□□□□□ -1.16
PTCD3-213ENST00000480102 COL17A1Q9UMD9 1497 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-213ENST00000480102 SPDYE16A6NNV3 312 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-213ENST00000480102 ARHGAP33O14559 1287 aa7.82□□□□□ -1.16
PTCD3-213ENST00000480102 PTGER2P43116 358 aa7.82□□□□□ -1.16
PTCD3-213ENST00000480102 KCNV2Q8TDN2 545 aa7.82□□□□□ -1.16
PTCD3-213ENST00000480102 AXIN2Q9Y2T1 843 aa7.82□□□□□ -1.16
PTCD3-213ENST00000480102 MAGI2Q86UL8 1455 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 PHF14O94880 888 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 LSM11P83369 360 aaKnown RBP eCLIP7.81□□□□□ -1.16
PTCD3-213ENST00000480102 SPNS2Q8IVW8 549 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 ZDHHC16Q969W1 377 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 KCNH8Q96L42 1107 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 BCL2L12Q9HB09 334 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 PCDHGA10Q9Y5H3 936 aa7.81□□□□□ -1.16
PTCD3-213ENST00000480102 PPRC1Q5VV67 1664 aaKnown RBP7.8□□□□□ -1.16
PTCD3-213ENST00000480102 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.8□□□□□ -1.16
PTCD3-213ENST00000480102 EFCAB2Q5VUJ9 269 aa7.8□□□□□ -1.16
PTCD3-213ENST00000480102 KDM6BO15054 1643 aa7.8□□□□□ -1.16
PTCD3-213ENST00000480102 VPS8Q8N3P4 1428 aa7.79□□□□□ -1.16
PTCD3-213ENST00000480102 PSEN2P49810 448 aa7.79□□□□□ -1.16
PTCD3-213ENST00000480102 ARHGEF1Q92888 912 aaKnown RBP7.79□□□□□ -1.16
PTCD3-213ENST00000480102 ADAM33Q9BZ11 813 aa7.79□□□□□ -1.16
PTCD3-213ENST00000480102 FANCAO15360 1455 aa7.79□□□□□ -1.16
PTCD3-213ENST00000480102 AKNAQ7Z591 1439 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 KIAA1107Q9UPP5 1409 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 CDK13Q14004 1512 aaKnown RBP7.78□□□□□ -1.16
PTCD3-213ENST00000480102 TYW1BQ6NUM6 668 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 DDX12PQ92771 950 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 FBXW7Q969H0 707 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 KCNK17Q96T54 332 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 EPAS1Q99814 870 aa7.78□□□□□ -1.16
PTCD3-213ENST00000480102 CFAP74Q9C0B2 1584 aa7.77□□□□□ -1.17
PTCD3-213ENST00000480102 DENND4BO75064 1496 aaPredicted RBP7.77□□□□□ -1.17
PTCD3-213ENST00000480102 PTPREP23469 700 aa7.77□□□□□ -1.17
PTCD3-213ENST00000480102 DMRTA1Q5VZB9 504 aa7.77□□□□□ -1.17
PTCD3-213ENST00000480102 ANKRD13DQ6ZTN6 518 aa7.77□□□□□ -1.17
PTCD3-213ENST00000480102 RANGAP1P46060 587 aaPredicted RBP7.76□□□□□ -1.17
PTCD3-213ENST00000480102 KDM2AQ9Y2K7 1162 aa7.76□□□□□ -1.17
PTCD3-213ENST00000480102 KIF14Q15058 1648 aa7.76□□□□□ -1.17
PTCD3-213ENST00000480102 ZMYM4Q5VZL5 1548 aa7.76□□□□□ -1.17
PTCD3-213ENST00000480102 PCF11O94913 1555 aaKnown RBP7.76□□□□□ -1.17
PTCD3-213ENST00000480102 PLEKHH2Q8IVE3 1493 aa7.75□□□□□ -1.17
PTCD3-213ENST00000480102 NBR1Q14596 966 aa7.75□□□□□ -1.17
PTCD3-213ENST00000480102 RSPH4AQ5TD94 716 aa7.75□□□□□ -1.17
PTCD3-213ENST00000480102 VSIG10Q8N0Z9 540 aa7.75□□□□□ -1.17
PTCD3-213ENST00000480102 POGZQ7Z3K3 1410 aa7.75□□□□□ -1.17
PTCD3-213ENST00000480102 ZNF518AQ6AHZ1 1483 aa7.75□□□□□ -1.17
PTCD3-213ENST00000480102 MTUS2Q5JR59 1369 aa7.74□□□□□ -1.17
PTCD3-213ENST00000480102 TK2O00142 265 aa7.74□□□□□ -1.17
PTCD3-213ENST00000480102 ADGRD1Q6QNK2 874 aa7.74□□□□□ -1.17
PTCD3-213ENST00000480102 MLH3Q9UHC1 1453 aa7.74□□□□□ -1.17
PTCD3-213ENST00000480102 EHBP1L1Q8N3D4 1523 aa7.73□□□□□ -1.17
PTCD3-213ENST00000480102 GPATCH8Q9UKJ3 1502 aaKnown RBP7.73□□□□□ -1.17
PTCD3-213ENST00000480102 TTC37Q6PGP7 1564 aa7.73□□□□□ -1.17
PTCD3-213ENST00000480102 SCAPERQ9BY12 1400 aa7.73□□□□□ -1.17
PTCD3-213ENST00000480102 ARID3CA6NKF2 412 aa7.73□□□□□ -1.17
PTCD3-213ENST00000480102 EN1Q05925 392 aaPredicted RBP7.73□□□□□ -1.17
PTCD3-213ENST00000480102 ADGRL1O94910 1474 aa7.73□□□□□ -1.17
PTCD3-213ENST00000480102 GRXCR2A6NFK2 248 aa7.72□□□□□ -1.17
PTCD3-213ENST00000480102 PPP1R3GB7ZBB8 358 aa7.72□□□□□ -1.17
PTCD3-213ENST00000480102 KDM5CP41229 1560 aa7.71□□□□□ -1.17
PTCD3-213ENST00000480102 MIA2Q96PC5 1412 aa7.71□□□□□ -1.17
PTCD3-213ENST00000480102 LRRC9Q6ZRR7 1453 aa7.71□□□□□ -1.18
PTCD3-213ENST00000480102 LOC105371045A0A1W2PR82 267 aa7.71□□□□□ -1.18
PTCD3-213ENST00000480102 RAPGEF3O95398 923 aa7.71□□□□□ -1.18
PTCD3-213ENST00000480102 RBM33Q96EV2 1170 aaKnown RBP7.71□□□□□ -1.18
PTCD3-213ENST00000480102 ZBED2Q9BTP6 218 aa7.71□□□□□ -1.18
PTCD3-213ENST00000480102 SLC4A5Q9BY07 1137 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms