RNA–Protein interactions for RNA: ENST00000473171.5

LSAMP-202, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-202ENST00000473171 GPATCH8Q9UKJ3 1502 aaKnown RBP12.69□□□□□ -0.38
LSAMP-202ENST00000473171 PLXNC1O60486 1568 aa12.69□□□□□ -0.38
LSAMP-202ENST00000473171 A2ML1A8K2U0 1454 aa12.68□□□□□ -0.38
LSAMP-202ENST00000473171 C7P10643 843 aa12.68□□□□□ -0.38
LSAMP-202ENST00000473171 CFDP1Q9UEE9 299 aaPredicted RBP12.68□□□□□ -0.38
LSAMP-202ENST00000473171 METRNQ9UJH8 293 aa12.68□□□□□ -0.38
LSAMP-202ENST00000473171 TRIM35Q9UPQ4 493 aa12.68□□□□□ -0.38
LSAMP-202ENST00000473171 CDC42BPAQ5VT25 1732 aa12.68□□□□□ -0.38
LSAMP-202ENST00000473171 FBXO31Q5XUX0 539 aaPredicted RBP12.67□□□□□ -0.38
LSAMP-202ENST00000473171 SHANK2Q9UPX8 1470 aa12.66□□□□□ -0.38
LSAMP-202ENST00000473171 INO80Q9ULG1 1556 aaPredicted RBP12.66□□□□□ -0.38
LSAMP-202ENST00000473171 KIAA1107Q9UPP5 1409 aa12.65□□□□□ -0.38
LSAMP-202ENST00000473171 CPS1P31327 1500 aa12.65□□□□□ -0.38
LSAMP-202ENST00000473171 DNMT1P26358 1616 aaKnown RBP12.65□□□□□ -0.38
LSAMP-202ENST00000473171 CCNB3Q8WWL7 1395 aa12.65□□□□□ -0.38
LSAMP-202ENST00000473171 TNRQ92752 1358 aa12.65□□□□□ -0.38
LSAMP-202ENST00000473171 ZNF644Q9H582 1327 aaPredicted RBP12.64□□□□□ -0.39
LSAMP-202ENST00000473171 PSEN1P49768 467 aa12.64□□□□□ -0.39
LSAMP-202ENST00000473171 PDAP1Q13442 181 aaKnown RBP12.64□□□□□ -0.39
LSAMP-202ENST00000473171 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.64□□□□□ -0.39
LSAMP-202ENST00000473171 PLEKHH2Q8IVE3 1493 aa12.64□□□□□ -0.39
LSAMP-202ENST00000473171 FYCO1Q9BQS8 1478 aa12.64□□□□□ -0.39
LSAMP-202ENST00000473171 NEURL4Q96JN8 1562 aa12.64□□□□□ -0.39
LSAMP-202ENST00000473171 ECM2O94769 699 aaPredicted RBP12.63□□□□□ -0.39
LSAMP-202ENST00000473171 GOLGA2Q08379 1002 aa12.63□□□□□ -0.39
LSAMP-202ENST00000473171 ANKLE2Q86XL3 938 aa12.62□□□□□ -0.39
LSAMP-202ENST00000473171 KIF3BO15066 747 aa12.61□□□□□ -0.39
LSAMP-202ENST00000473171 SEC24BO95487 1268 aa12.61□□□□□ -0.39
LSAMP-202ENST00000473171 ALKQ9UM73 1620 aa12.6□□□□□ -0.39
LSAMP-202ENST00000473171 NPHP4O75161 1426 aaPredicted RBP12.6□□□□□ -0.39
LSAMP-202ENST00000473171 VWDEQ8N2E2 1590 aa12.6□□□□□ -0.39
LSAMP-202ENST00000473171 MTUS2Q5JR59 1369 aa12.59□□□□□ -0.39
LSAMP-202ENST00000473171 RIOK3O14730 519 aaKnown RBP12.59□□□□□ -0.39
LSAMP-202ENST00000473171 PZPP20742 1482 aa12.59□□□□□ -0.39
LSAMP-202ENST00000473171 DHX29Q7Z478 1369 aaKnown RBP12.58□□□□□ -0.4
LSAMP-202ENST00000473171 IER5LQ5T953 404 aa12.58□□□□□ -0.4
LSAMP-202ENST00000473171 WASHC2CQ9Y4E1 1318 aa12.58□□□□□ -0.4
LSAMP-202ENST00000473171 THEMISQ8N1K5 641 aaPredicted RBP12.57□□□□□ -0.4
LSAMP-202ENST00000473171 MBD5Q9P267 1494 aa12.57□□□□□ -0.4
LSAMP-202ENST00000473171 KDM5DQ9BY66 1539 aa12.57□□□□□ -0.4
LSAMP-202ENST00000473171 MIA2Q96PC5 1412 aa12.56□□□□□ -0.4
LSAMP-202ENST00000473171 POLR1AO95602 1720 aaPredicted RBP12.56□□□□□ -0.4
LSAMP-202ENST00000473171 ADGBQ8N7X0 1667 aa12.55□□□□□ -0.4
LSAMP-202ENST00000473171 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
LSAMP-202ENST00000473171 RGS17Q9UGC6 210 aaPredicted RBP12.55□□□□□ -0.4
LSAMP-202ENST00000473171 FAM135AQ9P2D6 1515 aa12.55□□□□□ -0.4
LSAMP-202ENST00000473171 UGGT1Q9NYU2 1555 aa12.55□□□□□ -0.4
LSAMP-202ENST00000473171 RTEL1-TNFRSF6BF6WH68 1400 aa12.54□□□□□ -0.4
LSAMP-202ENST00000473171 LRRC7Q96NW7 1537 aa12.54□□□□□ -0.4
LSAMP-202ENST00000473171 TAOK2Q9UL54 1235 aa12.54□□□□□ -0.4
LSAMP-202ENST00000473171 MED14O60244 1454 aa12.53□□□□□ -0.4
LSAMP-202ENST00000473171 NLRP1Q9C000 1473 aa12.53□□□□□ -0.4
LSAMP-202ENST00000473171 TIAM1Q13009 1591 aa12.53□□□□□ -0.4
LSAMP-202ENST00000473171 RNF25Q96BH1 459 aaPredicted RBP12.53□□□□□ -0.4
LSAMP-202ENST00000473171 VGFO15240 615 aaPredicted RBP12.52□□□□□ -0.41
LSAMP-202ENST00000473171 PLCG2P16885 1265 aa12.52□□□□□ -0.41
LSAMP-202ENST00000473171 CABP2Q9NPB3 220 aa12.51□□□□□ -0.41
LSAMP-202ENST00000473171 CCDC141Q6ZP82 1450 aa12.5□□□□□ -0.41
LSAMP-202ENST00000473171 IQGAP1P46940 1657 aa12.49□□□□□ -0.41
LSAMP-202ENST00000473171 DEPDC5O75140 1603 aa12.49□□□□□ -0.41
LSAMP-202ENST00000473171 RNF17Q9BXT8 1623 aaKnown RBP12.49□□□□□ -0.41
LSAMP-202ENST00000473171 POTEB2H3BUK9 544 aa12.49□□□□□ -0.41
LSAMP-202ENST00000473171 COLQQ9Y215 455 aaPredicted RBP12.49□□□□□ -0.41
LSAMP-202ENST00000473171 POTEAQ6S8J7 498 aa12.48□□□□□ -0.41
LSAMP-202ENST00000473171 EHBP1L1Q8N3D4 1523 aa12.47□□□□□ -0.41
LSAMP-202ENST00000473171 CAMSAP2Q08AD1 1489 aa12.47□□□□□ -0.41
LSAMP-202ENST00000473171 CEP162Q5TB80 1403 aa12.47□□□□□ -0.41
LSAMP-202ENST00000473171 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.47□□□□□ -0.41
LSAMP-202ENST00000473171 POTEFA5A3E0 1075 aa12.47□□□□□ -0.41
LSAMP-202ENST00000473171 ZFP91Q96JP5 570 aaPredicted RBP12.47□□□□□ -0.41
LSAMP-202ENST00000473171 STRCP1A6NGW2 1772 aa12.47□□□□□ -0.41
LSAMP-202ENST00000473171 RGL2O15211 777 aa12.46□□□□□ -0.41
LSAMP-202ENST00000473171 SYNMO15061 1565 aa12.46□□□□□ -0.42
LSAMP-202ENST00000473171 ERVK-7P63135 1459 aa12.46□□□□□ -0.42
LSAMP-202ENST00000473171 IRX5P78411 483 aaPredicted RBP12.45□□□□□ -0.42
LSAMP-202ENST00000473171 OCEL1Q9H607 264 aa12.45□□□□□ -0.42
LSAMP-202ENST00000473171 ABCC3O15438 1527 aa12.44□□□□□ -0.42
LSAMP-202ENST00000473171 LTKP29376 864 aa12.44□□□□□ -0.42
LSAMP-202ENST00000473171 SCAF11Q99590 1463 aaKnown RBP12.44□□□□□ -0.42
LSAMP-202ENST00000473171 NCOA2Q15596 1464 aa12.43□□□□□ -0.42
LSAMP-202ENST00000473171 TSPY4P0CV99 314 aa12.43□□□□□ -0.42
LSAMP-202ENST00000473171 TSPY10P0CW01 314 aa12.43□□□□□ -0.42
LSAMP-202ENST00000473171 MAMSTRQ6ZN01 415 aa12.43□□□□□ -0.42
LSAMP-202ENST00000473171 TXNDC2Q86VQ3 553 aa12.43□□□□□ -0.42
LSAMP-202ENST00000473171 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.43□□□□□ -0.42
LSAMP-202ENST00000473171 RBM33Q96EV2 1170 aaKnown RBP12.42□□□□□ -0.42
LSAMP-202ENST00000473171 RSPH4AQ5TD94 716 aa12.41□□□□□ -0.42
LSAMP-202ENST00000473171 SCUBE2Q9NQ36 999 aa12.4□□□□□ -0.42
LSAMP-202ENST00000473171 ZC3H13Q5T200 1668 aaKnown RBP12.4□□□□□ -0.42
LSAMP-202ENST00000473171 TMEM94Q12767 1356 aa12.4□□□□□ -0.42
LSAMP-202ENST00000473171 FAM135BQ49AJ0 1406 aa12.39□□□□□ -0.43
LSAMP-202ENST00000473171 STK25O00506 426 aa12.39□□□□□ -0.43
LSAMP-202ENST00000473171 EFCAB3Q8N7B9 438 aa12.39□□□□□ -0.43
LSAMP-202ENST00000473171 BCL11BQ9C0K0 894 aaPredicted RBP12.39□□□□□ -0.43
LSAMP-202ENST00000473171 STK24Q9Y6E0 443 aa12.39□□□□□ -0.43
LSAMP-202ENST00000473171 EID1Q9Y6B2 187 aa12.38□□□□□ -0.43
LSAMP-202ENST00000473171 ARHGAP23Q9P227 1491 aa12.38□□□□□ -0.43
LSAMP-202ENST00000473171 OTUD5Q96G74 571 aa12.37□□□□□ -0.43
LSAMP-202ENST00000473171 SLIT1O75093 1534 aa12.37□□□□□ -0.43
LSAMP-202ENST00000473171 ARHGEF5Q12774 1597 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms