RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TXNDC2Q86VQ3 553 aa8.64□□□□□ -1.03
PTPN4-209ENST00000469511 PLCD3Q8N3E9 789 aa8.64□□□□□ -1.03
PTPN4-209ENST00000469511 SCAF11Q99590 1463 aaKnown RBP8.64□□□□□ -1.03
PTPN4-209ENST00000469511 PHLPP1O60346 1717 aa8.63□□□□□ -1.03
PTPN4-209ENST00000469511 TMEM94Q12767 1356 aa8.63□□□□□ -1.03
PTPN4-209ENST00000469511 MAP3K1Q13233 1512 aa8.63□□□□□ -1.03
PTPN4-209ENST00000469511 CAMSAP2Q08AD1 1489 aa8.63□□□□□ -1.03
PTPN4-209ENST00000469511 CCDC141Q6ZP82 1450 aa8.63□□□□□ -1.03
PTPN4-209ENST00000469511 ARHGAP23Q9P227 1491 aa8.63□□□□□ -1.03
PTPN4-209ENST00000469511 LRP6O75581 1613 aa8.62□□□□□ -1.03
PTPN4-209ENST00000469511 MIER1Q8N108 512 aa8.62□□□□□ -1.03
PTPN4-209ENST00000469511 KLHL34Q8N239 644 aa8.62□□□□□ -1.03
PTPN4-209ENST00000469511 SPOCK2Q92563 424 aa8.62□□□□□ -1.03
PTPN4-209ENST00000469511 TRIM52Q96A61 297 aa8.62□□□□□ -1.03
PTPN4-209ENST00000469511 PIK3C2BO00750 1634 aa8.62□□□□□ -1.03
PTPN4-209ENST00000469511 SLIT1O75093 1534 aa8.61□□□□□ -1.03
PTPN4-209ENST00000469511 PROSER2Q86WR7 435 aaPredicted RBP8.6□□□□□ -1.03
PTPN4-209ENST00000469511 SPDYE1Q8NFV5 336 aaPredicted RBP8.6□□□□□ -1.03
PTPN4-209ENST00000469511 SLC26A8Q96RN1 970 aa8.6□□□□□ -1.03
PTPN4-209ENST00000469511 COL16A1Q07092 1604 aaPredicted RBP8.59□□□□□ -1.03
PTPN4-209ENST00000469511 EHBP1L1Q8N3D4 1523 aa8.59□□□□□ -1.03
PTPN4-209ENST00000469511 TET3O43151 1660 aa8.59□□□□□ -1.03
PTPN4-209ENST00000469511 CEP162Q5TB80 1403 aa8.58□□□□□ -1.04
PTPN4-209ENST00000469511 MYO5BQ9ULV0 1848 aa8.58□□□□□ -1.04
PTPN4-209ENST00000469511 ARHGEF5Q12774 1597 aa8.57□□□□□ -1.04
PTPN4-209ENST00000469511 PLEKHG5O94827 1062 aa8.57□□□□□ -1.04
PTPN4-209ENST00000469511 KCNA6P17658 529 aa8.57□□□□□ -1.04
PTPN4-209ENST00000469511 REM2Q8IYK8 340 aaPredicted RBP8.57□□□□□ -1.04
PTPN4-209ENST00000469511 ZBTB47Q9UFB7 747 aaPredicted RBP8.57□□□□□ -1.04
PTPN4-209ENST00000469511 CHD2O14647 1828 aaKnown RBP8.57□□□□□ -1.04
PTPN4-209ENST00000469511 EIF2AK4Q9P2K8 1649 aaKnown RBP8.56□□□□□ -1.04
PTPN4-209ENST00000469511 SLAIN2Q9P270 581 aa8.56□□□□□ -1.04
PTPN4-209ENST00000469511 JCADQ9P266 1359 aa8.56□□□□□ -1.04
PTPN4-209ENST00000469511 TMEM2Q9UHN6 1383 aa8.56□□□□□ -1.04
PTPN4-209ENST00000469511 PRDM15P57071 1507 aaPredicted RBP8.55□□□□□ -1.04
PTPN4-209ENST00000469511 TSPY4P0CV99 314 aa8.55□□□□□ -1.04
PTPN4-209ENST00000469511 TSPY10P0CW01 314 aa8.55□□□□□ -1.04
PTPN4-209ENST00000469511 IDI1Q13907 227 aa8.55□□□□□ -1.04
PTPN4-209ENST00000469511 MAST1Q9Y2H9 1570 aa8.55□□□□□ -1.04
PTPN4-209ENST00000469511 NWD1Q149M9 1564 aa8.54□□□□□ -1.04
PTPN4-209ENST00000469511 SLC24A1O60721 1099 aa8.54□□□□□ -1.04
PTPN4-209ENST00000469511 EID1Q9Y6B2 187 aa8.54□□□□□ -1.04
PTPN4-209ENST00000469511 KDM5AP29375 1690 aaKnown RBP8.53□□□□□ -1.04
PTPN4-209ENST00000469511 RSPH4AQ5TD94 716 aa8.53□□□□□ -1.04
PTPN4-209ENST00000469511 SHPRHQ149N8 1683 aa8.53□□□□□ -1.04
PTPN4-209ENST00000469511 LRRC9Q6ZRR7 1453 aa8.52□□□□□ -1.05
PTPN4-209ENST00000469511 NUTM2BA6NNL0 878 aaPredicted RBP8.52□□□□□ -1.05
PTPN4-209ENST00000469511 NUTM2EB1AL46 878 aaPredicted RBP8.52□□□□□ -1.05
PTPN4-209ENST00000469511 MEX3CQ5U5Q3 659 aaKnown RBP8.52□□□□□ -1.05
PTPN4-209ENST00000469511 NUTM2AQ8IVF1 878 aaPredicted RBP8.52□□□□□ -1.05
PTPN4-209ENST00000469511 EFCAB6Q5THR3 1501 aa8.52□□□□□ -1.05
PTPN4-209ENST00000469511 ARHGAP31Q2M1Z3 1444 aa8.52□□□□□ -1.05
PTPN4-209ENST00000469511 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.51□□□□□ -1.05
PTPN4-209ENST00000469511 MSH6P52701 1360 aa8.51□□□□□ -1.05
PTPN4-209ENST00000469511 RXRBP28702 533 aa8.51□□□□□ -1.05
PTPN4-209ENST00000469511 DIP2AQ14689 1571 aa8.51□□□□□ -1.05
PTPN4-209ENST00000469511 ZNF772Q68DY9 489 aaPredicted RBP8.5□□□□□ -1.05
PTPN4-209ENST00000469511 NKTRP30414 1462 aaKnown RBP8.5□□□□□ -1.05
PTPN4-209ENST00000469511 SPATA31A6Q5VVP1 1343 aa8.5□□□□□ -1.05
PTPN4-209ENST00000469511 DUOX2Q9NRD8 1548 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 RGS12O14924 1447 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 PRR29P0C7W0 189 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 KANK4Q5T7N3 995 aaPredicted RBP8.49□□□□□ -1.05
PTPN4-209ENST00000469511 BCANQ96GW7 911 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 RRP7BPQ9NSQ0 103 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 CLEC11AQ9Y240 323 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 AHDC1Q5TGY3 1603 aaPredicted RBP8.49□□□□□ -1.05
PTPN4-209ENST00000469511 AFF2P51816 1311 aa8.49□□□□□ -1.05
PTPN4-209ENST00000469511 SETBP1Q9Y6X0 1596 aa8.48□□□□□ -1.05
PTPN4-209ENST00000469511 FGD6Q6ZV73 1430 aa8.48□□□□□ -1.05
PTPN4-209ENST00000469511 NUTM2DQ5VT03 806 aaPredicted RBP8.48□□□□□ -1.05
PTPN4-209ENST00000469511 DDX17Q92841 729 aaKnown RBP8.48□□□□□ -1.05
PTPN4-209ENST00000469511 GCC2Q8IWJ2 1684 aa8.47□□□□□ -1.05
PTPN4-209ENST00000469511 ADGRB3O60242 1522 aa8.47□□□□□ -1.05
PTPN4-209ENST00000469511 CROCC2H7BZ55 1655 aa8.46□□□□□ -1.05
PTPN4-209ENST00000469511 ZFYVE9O95405 1425 aa8.46□□□□□ -1.05
PTPN4-209ENST00000469511 NOS1P29475 1434 aa8.46□□□□□ -1.05
PTPN4-209ENST00000469511 CDK12Q9NYV4 1490 aaPredicted RBP8.46□□□□□ -1.05
PTPN4-209ENST00000469511 PITPNM1O00562 1244 aa8.46□□□□□ -1.06
PTPN4-209ENST00000469511 BRINP3Q76B58 766 aa8.46□□□□□ -1.06
PTPN4-209ENST00000469511 CREBZFQ9NS37 354 aa8.46□□□□□ -1.06
PTPN4-209ENST00000469511 KIF15Q9NS87 1388 aa8.46□□□□□ -1.06
PTPN4-209ENST00000469511 ABCC5O15440 1437 aa8.46□□□□□ -1.06
PTPN4-209ENST00000469511 ECM2O94769 699 aaPredicted RBP8.45□□□□□ -1.06
PTPN4-209ENST00000469511 C8orf37Q96NL8 207 aa8.45□□□□□ -1.06
PTPN4-209ENST00000469511 QTRT2Q9H974 415 aaKnown RBP8.45□□□□□ -1.06
PTPN4-209ENST00000469511 SRCAPQ6ZRS2 3230 aa8.45□□□□□ -1.06
PTPN4-209ENST00000469511 ADAMTS13Q76LX8 1427 aa8.45□□□□□ -1.06
PTPN4-209ENST00000469511 TMEM131LA2VDJ0 1609 aa8.44□□□□□ -1.06
PTPN4-209ENST00000469511 C14orf37Q86TY3 774 aa8.44□□□□□ -1.06
PTPN4-209ENST00000469511 PTPRUQ92729 1446 aa8.44□□□□□ -1.06
PTPN4-209ENST00000469511 RIMS2Q9UQ26 1411 aa8.44□□□□□ -1.06
PTPN4-209ENST00000469511 LMTK2Q8IWU2 1503 aa8.44□□□□□ -1.06
PTPN4-209ENST00000469511 NHSL1Q5SYE7 1610 aa8.43□□□□□ -1.06
PTPN4-209ENST00000469511 C19orf44Q9H6X5 657 aa8.43□□□□□ -1.06
PTPN4-209ENST00000469511 CHIC2Q9UKJ5 165 aa8.43□□□□□ -1.06
PTPN4-209ENST00000469511 PLEKHG1Q9ULL1 1385 aa8.43□□□□□ -1.06
PTPN4-209ENST00000469511 ERBINQ96RT1 1412 aa8.43□□□□□ -1.06
PTPN4-209ENST00000469511 MNX1P50219 401 aaPredicted RBP8.42□□□□□ -1.06
PTPN4-209ENST00000469511 RBM6P78332 1123 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms