RNA–Protein interactions for RNA: ENST00000459963.5

NCSTN-209, Transcript of nicastrin, human

TSL 5

Gene NCSTN, Length 1,246 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCSTN-209	ENST00000459963	SLIT1	O75093	1534 aa		13.66	□□□□□ -0.22
NCSTN-209	ENST00000459963	NHSL1	Q5SYE7	1610 aa		13.66	□□□□□ -0.22
NCSTN-209	ENST00000459963	KIF3B	O15066	747 aa		13.66	□□□□□ -0.22
NCSTN-209	ENST00000459963	DHX29	Q7Z478	1369 aa	Known RBP	13.66	□□□□□ -0.22
NCSTN-209	ENST00000459963	NCOA2	Q15596	1464 aa		13.66	□□□□□ -0.22
NCSTN-209	ENST00000459963	FMN1	Q68DA7	1419 aa		13.65	□□□□□ -0.22
NCSTN-209	ENST00000459963	UBR1	Q8IWV7	1749 aa		13.65	□□□□□ -0.22
NCSTN-209	ENST00000459963	EID1	Q9Y6B2	187 aa		13.65	□□□□□ -0.22
NCSTN-209	ENST00000459963	NKTR	P30414	1462 aa	Known RBP	13.65	□□□□□ -0.22
NCSTN-209	ENST00000459963	DIP2A	Q14689	1571 aa		13.65	□□□□□ -0.22
NCSTN-209	ENST00000459963	SENP3-EIF4A1	A0A087X0R7	540 aa		13.63	□□□□□ -0.23
NCSTN-209	ENST00000459963	PLEKHH2	Q8IVE3	1493 aa		13.61	□□□□□ -0.23
NCSTN-209	ENST00000459963	HRC	P23327	699 aa		13.61	□□□□□ -0.23
NCSTN-209	ENST00000459963	CSRNP3	Q8WYN3	585 aa		13.61	□□□□□ -0.23
NCSTN-209	ENST00000459963	EHMT2	Q96KQ7	1210 aa		13.61	□□□□□ -0.23
NCSTN-209	ENST00000459963	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.61	□□□□□ -0.23
NCSTN-209	ENST00000459963	KDM5A	P29375	1690 aa	Known RBP	13.6	□□□□□ -0.23
NCSTN-209	ENST00000459963	ERVK-7	P63135	1459 aa		13.6	□□□□□ -0.23
NCSTN-209	ENST00000459963	BLM	P54132	1417 aa	Predicted RBP	13.59	□□□□□ -0.23
NCSTN-209	ENST00000459963	DEFB132	Q7Z7B7	95 aa		13.58	□□□□□ -0.24
NCSTN-209	ENST00000459963	SLC26A8	Q96RN1	970 aa		13.58	□□□□□ -0.24
NCSTN-209	ENST00000459963	LRRIQ1	Q96JM4	1722 aa		13.58	□□□□□ -0.24
NCSTN-209	ENST00000459963	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.58	□□□□□ -0.24
NCSTN-209	ENST00000459963	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.57	□□□□□ -0.24
NCSTN-209	ENST00000459963	PSD	A5PKW4	1024 aa	Predicted RBP	13.57	□□□□□ -0.24
NCSTN-209	ENST00000459963	TRPC5	Q9UL62	973 aa	Predicted RBP	13.57	□□□□□ -0.24
NCSTN-209	ENST00000459963	RBM42	Q9BTD8	480 aa	Known RBP	13.56	□□□□□ -0.24
NCSTN-209	ENST00000459963	SETD5	Q9C0A6	1442 aa		13.56	□□□□□ -0.24
NCSTN-209	ENST00000459963	BCL9L	Q86UU0	1499 aa		13.55	□□□□□ -0.24
NCSTN-209	ENST00000459963	TMEM2	Q9UHN6	1383 aa		13.55	□□□□□ -0.24
NCSTN-209	ENST00000459963	TET3	O43151	1660 aa		13.54	□□□□□ -0.24
NCSTN-209	ENST00000459963	USP21	Q9UK80	565 aa		13.54	□□□□□ -0.24
NCSTN-209	ENST00000459963	CADPS2	Q86UW7	1296 aa		13.53	□□□□□ -0.24
NCSTN-209	ENST00000459963	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.53	□□□□□ -0.24
NCSTN-209	ENST00000459963	BRINP3	Q76B58	766 aa		13.52	□□□□□ -0.25
NCSTN-209	ENST00000459963	NCOA3	Q9Y6Q9	1424 aa		13.52	□□□□□ -0.25
NCSTN-209	ENST00000459963	MAST1	Q9Y2H9	1570 aa		13.52	□□□□□ -0.25
NCSTN-209	ENST00000459963	ATRN	O75882	1429 aa		13.51	□□□□□ -0.25
NCSTN-209	ENST00000459963	ADAMTS2	O95450	1211 aa		13.51	□□□□□ -0.25
NCSTN-209	ENST00000459963	SF3B2	Q13435	895 aa	Known RBP	13.51	□□□□□ -0.25
NCSTN-209	ENST00000459963	LRRC59	Q96AG4	307 aa	Known RBP	13.51	□□□□□ -0.25
NCSTN-209	ENST00000459963	CAMSAP2	Q08AD1	1489 aa		13.5	□□□□□ -0.25
NCSTN-209	ENST00000459963	ATF3	P18847	181 aa		13.5	□□□□□ -0.25
NCSTN-209	ENST00000459963	PNPLA6	Q8IY17	1366 aa		13.49	□□□□□ -0.25
NCSTN-209	ENST00000459963	C14orf37	Q86TY3	774 aa		13.49	□□□□□ -0.25
NCSTN-209	ENST00000459963	CCDC18	Q5T9S5	1454 aa		13.48	□□□□□ -0.25
NCSTN-209	ENST00000459963	MBD5	Q9P267	1494 aa		13.48	□□□□□ -0.25
NCSTN-209	ENST00000459963	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.48	□□□□□ -0.25
NCSTN-209	ENST00000459963	MROH1	Q8NDA8	1641 aa		13.47	□□□□□ -0.25
NCSTN-209	ENST00000459963	C1QTNF8	P60827	252 aa		13.47	□□□□□ -0.25
NCSTN-209	ENST00000459963	C19orf44	Q9H6X5	657 aa		13.47	□□□□□ -0.25
NCSTN-209	ENST00000459963	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.47	□□□□□ -0.25
NCSTN-209	ENST00000459963	ARHGAP35	Q9NRY4	1499 aa		13.46	□□□□□ -0.25
NCSTN-209	ENST00000459963	ASXL1	Q8IXJ9	1541 aa		13.45	□□□□□ -0.26
NCSTN-209	ENST00000459963	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.45	□□□□□ -0.26
NCSTN-209	ENST00000459963	STAG3	Q9UJ98	1225 aa		13.45	□□□□□ -0.26
NCSTN-209	ENST00000459963	ZNF644	Q9H582	1327 aa	Predicted RBP	13.44	□□□□□ -0.26
NCSTN-209	ENST00000459963	PIK3C2B	O00750	1634 aa		13.44	□□□□□ -0.26
NCSTN-209	ENST00000459963	BCAN	Q96GW7	911 aa		13.43	□□□□□ -0.26
NCSTN-209	ENST00000459963	CCNB3	Q8WWL7	1395 aa		13.43	□□□□□ -0.26
NCSTN-209	ENST00000459963	UNC13B	O14795	1591 aa		13.42	□□□□□ -0.26
NCSTN-209	ENST00000459963	CHD2	O14647	1828 aa	Known RBP	13.42	□□□□□ -0.26
NCSTN-209	ENST00000459963	EFCAB6	Q5THR3	1501 aa		13.42	□□□□□ -0.26
NCSTN-209	ENST00000459963	CFAP65	Q6ZU64	1925 aa	Known RBP	13.41	□□□□□ -0.26
NCSTN-209	ENST00000459963	R3HDM1	Q15032	1099 aa	Known RBP	13.41	□□□□□ -0.26
NCSTN-209	ENST00000459963	GJD4	Q96KN9	370 aa	Predicted RBP	13.41	□□□□□ -0.26
NCSTN-209	ENST00000459963	PTCH1	Q13635	1447 aa		13.39	□□□□□ -0.27
NCSTN-209	ENST00000459963	BAG6	P46379	1132 aa		13.38	□□□□□ -0.27
NCSTN-209	ENST00000459963	CASKIN1	Q8WXD9	1431 aa		13.38	□□□□□ -0.27
NCSTN-209	ENST00000459963	DDX17	Q92841	729 aa	Known RBP	13.37	□□□□□ -0.27
NCSTN-209	ENST00000459963	ARHGAP31	Q2M1Z3	1444 aa		13.36	□□□□□ -0.27
NCSTN-209	ENST00000459963	CEP152	O94986	1710 aa		13.36	□□□□□ -0.27
NCSTN-209	ENST00000459963	CCDC141	Q6ZP82	1450 aa		13.36	□□□□□ -0.27
NCSTN-209	ENST00000459963	DCC	P43146	1447 aa		13.35	□□□□□ -0.27
NCSTN-209	ENST00000459963	SPHKAP	Q2M3C7	1700 aa		13.35	□□□□□ -0.27
NCSTN-209	ENST00000459963	MST1R	Q04912	1400 aa		13.34	□□□□□ -0.27
NCSTN-209	ENST00000459963	IDI1	Q13907	227 aa		13.34	□□□□□ -0.27
NCSTN-209	ENST00000459963	EEA1	Q15075	1411 aa		13.33	□□□□□ -0.28
NCSTN-209	ENST00000459963	PLEKHG1	Q9ULL1	1385 aa		13.32	□□□□□ -0.28
NCSTN-209	ENST00000459963	PPP1R15A	O75807	674 aa	Predicted RBP	13.32	□□□□□ -0.28
NCSTN-209	ENST00000459963	RSPH4A	Q5TD94	716 aa		13.32	□□□□□ -0.28
NCSTN-209	ENST00000459963	TBX22	Q9Y458	520 aa		13.32	□□□□□ -0.28
NCSTN-209	ENST00000459963	CEP350	Q5VT06	3117 aa		13.31	□□□□□ -0.28
NCSTN-209	ENST00000459963	BRWD3	Q6RI45	1802 aa		13.31	□□□□□ -0.28
NCSTN-209	ENST00000459963	RALGAPB	Q86X10	1494 aa		13.3	□□□□□ -0.28
NCSTN-209	ENST00000459963	GLI3	P10071	1580 aa		13.3	□□□□□ -0.28
NCSTN-209	ENST00000459963	EN1	Q05925	392 aa	Predicted RBP	13.3	□□□□□ -0.28
NCSTN-209	ENST00000459963	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.3	□□□□□ -0.28
NCSTN-209	ENST00000459963	NINL	Q9Y2I6	1382 aa		13.3	□□□□□ -0.28
NCSTN-209	ENST00000459963	SEPT12	Q8IYM1	358 aa		13.28	□□□□□ -0.28
NCSTN-209	ENST00000459963	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.28	□□□□□ -0.28
NCSTN-209	ENST00000459963	ADGRB3	O60242	1522 aa		13.28	□□□□□ -0.28
NCSTN-209	ENST00000459963	UBTF	P17480	764 aa	Known RBP	13.27	□□□□□ -0.29
NCSTN-209	ENST00000459963	MTUS2	Q5JR59	1369 aa		13.27	□□□□□ -0.29
NCSTN-209	ENST00000459963	TSPY4	P0CV99	314 aa		13.26	□□□□□ -0.29
NCSTN-209	ENST00000459963	TSPY10	P0CW01	314 aa		13.26	□□□□□ -0.29
NCSTN-209	ENST00000459963	KRT27	Q7Z3Y8	459 aa		13.26	□□□□□ -0.29
NCSTN-209	ENST00000459963	CAMTA1	Q9Y6Y1	1673 aa		13.26	□□□□□ -0.29
NCSTN-209	ENST00000459963	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.25	□□□□□ -0.29
NCSTN-209	ENST00000459963	FYCO1	Q9BQS8	1478 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms