RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 PDE3AQ14432 1141 aa8.39□□□□□ -1.07
CSDE1-205ENST00000438362 PLB1Q6P1J6 1458 aa8.39□□□□□ -1.07
CSDE1-205ENST00000438362 VGFO15240 615 aaPredicted RBP8.39□□□□□ -1.07
CSDE1-205ENST00000438362 AFAP1Q8N556 730 aa8.39□□□□□ -1.07
CSDE1-205ENST00000438362 DDX19BQ9UMR2 479 aa8.39□□□□□ -1.07
CSDE1-205ENST00000438362 BCAR3O75815 825 aa8.38□□□□□ -1.07
CSDE1-205ENST00000438362 C14orf37Q86TY3 774 aa8.38□□□□□ -1.07
CSDE1-205ENST00000438362 APBB1O00213 710 aa8.38□□□□□ -1.07
CSDE1-205ENST00000438362 TCP11L2Q8N4U5 519 aa8.38□□□□□ -1.07
CSDE1-205ENST00000438362 CTTNBP2Q8WZ74 1663 aa8.38□□□□□ -1.07
CSDE1-205ENST00000438362 DDX11L8A8MPP1 907 aa8.37□□□□□ -1.07
CSDE1-205ENST00000438362 MAGI1Q96QZ7 1491 aaPredicted RBP8.37□□□□□ -1.07
CSDE1-205ENST00000438362 ARHGEF11O15085 1522 aa8.37□□□□□ -1.07
CSDE1-205ENST00000438362 MSNP26038 577 aaKnown RBP8.37□□□□□ -1.07
CSDE1-205ENST00000438362 DNAJC5BQ9UF47 199 aa8.37□□□□□ -1.07
CSDE1-205ENST00000438362 PLEKHH2Q8IVE3 1493 aa8.37□□□□□ -1.07
CSDE1-205ENST00000438362 DNTTIP2Q5QJE6 756 aaKnown RBP8.37□□□□□ -1.07
CSDE1-205ENST00000438362 FRAT2O75474 233 aaPredicted RBP8.36□□□□□ -1.07
CSDE1-205ENST00000438362 MCCP23508 829 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 MTHFSP49914 203 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 CHMP5Q9NZZ3 219 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 CCDC141Q6ZP82 1450 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 SLFN5Q08AF3 891 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 SOX12O15370 315 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 LMOD3Q0VAK6 560 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 C20orf194Q5TEA3 1177 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 ANKRD45Q5TZF3 282 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 POTEDQ86YR6 584 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 GPATCH8Q9UKJ3 1502 aaKnown RBP8.36□□□□□ -1.07
CSDE1-205ENST00000438362 HDGFP51858 240 aaKnown RBP8.36□□□□□ -1.07
CSDE1-205ENST00000438362 TPRNQ4KMQ1 711 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 IL27Q8NEV9 243 aa8.36□□□□□ -1.07
CSDE1-205ENST00000438362 ZBTB7CA1YPR0 619 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.35□□□□□ -1.07
CSDE1-205ENST00000438362 FOXD4L1Q9NU39 408 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 GRIN2AQ12879 1464 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 SKAP1Q86WV1 359 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 RTF1Q92541 710 aaKnown RBP8.35□□□□□ -1.07
CSDE1-205ENST00000438362 RSPH6AQ9H0K4 717 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 SCAPERQ9BY12 1400 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 ELL2O00472 640 aaPredicted RBP8.35□□□□□ -1.07
CSDE1-205ENST00000438362 RIPK4P57078 832 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 MLECQ14165 292 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 C22orf23Q9BZE7 217 aa8.35□□□□□ -1.07
CSDE1-205ENST00000438362 RALGAPBQ86X10 1494 aa8.34□□□□□ -1.07
CSDE1-205ENST00000438362 BRPF3Q9ULD4 1205 aa8.34□□□□□ -1.07
CSDE1-205ENST00000438362 DIAPH1O60610 1272 aaKnown RBP8.34□□□□□ -1.07
CSDE1-205ENST00000438362 TMEM132EQ6IEE7 984 aa8.34□□□□□ -1.07
CSDE1-205ENST00000438362 PDZRN3Q9UPQ7 1066 aa8.34□□□□□ -1.07
CSDE1-205ENST00000438362 MINK1Q8N4C8 1332 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-205ENST00000438362 KIF16BQ96L93 1317 aa8.34□□□□□ -1.07
CSDE1-205ENST00000438362 DHX29Q7Z478 1369 aaKnown RBP8.34□□□□□ -1.07
CSDE1-205ENST00000438362 NINLQ9Y2I6 1382 aa8.33□□□□□ -1.08
CSDE1-205ENST00000438362 SLC12A5Q9H2X9 1139 aa8.33□□□□□ -1.08
CSDE1-205ENST00000438362 HMMRO75330 724 aa8.33□□□□□ -1.08
CSDE1-205ENST00000438362 PLCB2Q00722 1185 aa8.33□□□□□ -1.08
CSDE1-205ENST00000438362 OS9Q13438 667 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-205ENST00000438362 DUSP27Q5VZP5 1158 aa8.32□□□□□ -1.08
CSDE1-205ENST00000438362 NUP153P49790 1475 aaKnown RBP8.32□□□□□ -1.08
CSDE1-205ENST00000438362 PLEKHG5O94827 1062 aa8.32□□□□□ -1.08
CSDE1-205ENST00000438362 SKOR2Q2VWA4 1001 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-205ENST00000438362 LNPKQ9C0E8 428 aa8.32□□□□□ -1.08
CSDE1-205ENST00000438362 GGNBP2Q9H3C7 697 aa8.32□□□□□ -1.08
CSDE1-205ENST00000438362 KIF14Q15058 1648 aa8.32□□□□□ -1.08
CSDE1-205ENST00000438362 ZNF608Q9ULD9 1512 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-205ENST00000438362 WDR63Q8IWG1 891 aa8.32□□□□□ -1.08
CSDE1-205ENST00000438362 ST18O60284 1047 aa8.31□□□□□ -1.08
CSDE1-205ENST00000438362 WWC1Q8IX03 1113 aa8.31□□□□□ -1.08
CSDE1-205ENST00000438362 PARD3Q8TEW0 1356 aa8.31□□□□□ -1.08
CSDE1-205ENST00000438362 DISP3Q9P2K9 1392 aa8.31□□□□□ -1.08
CSDE1-205ENST00000438362 MAPK8IP2Q13387 824 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-205ENST00000438362 DDX49Q9Y6V7 483 aaKnown RBP8.31□□□□□ -1.08
CSDE1-205ENST00000438362 KCNJ4P48050 445 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 STK31Q9BXU1 1019 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 CABP2Q9NPB3 220 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 TEX14Q8IWB6 1497 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 EXOSC9Q06265 439 aaKnown RBP8.3□□□□□ -1.08
CSDE1-205ENST00000438362 WDR62O43379 1518 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 RAPGEF6Q8TEU7 1601 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 SLC4A10Q6U841 1118 aa8.3□□□□□ -1.08
CSDE1-205ENST00000438362 API5Q9BZZ5 524 aaKnown RBP8.3□□□□□ -1.08
CSDE1-205ENST00000438362 RNF123Q5XPI4 1314 aa8.29□□□□□ -1.08
CSDE1-205ENST00000438362 PZPP20742 1482 aa8.29□□□□□ -1.08
CSDE1-205ENST00000438362 SYAP1Q96A49 352 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-205ENST00000438362 RNF216Q9NWF9 866 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-205ENST00000438362 NKTRP30414 1462 aaKnown RBP8.29□□□□□ -1.08
CSDE1-205ENST00000438362 CT47B1P0C2W7 299 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-205ENST00000438362 KIAA1211Q6ZU35 1233 aa8.29□□□□□ -1.08
CSDE1-205ENST00000438362 MVPQ14764 893 aaKnown RBP8.28□□□□□ -1.08
CSDE1-205ENST00000438362 TSR2Q969E8 191 aaKnown RBP8.28□□□□□ -1.08
CSDE1-205ENST00000438362 COG3Q96JB2 828 aa8.28□□□□□ -1.08
CSDE1-205ENST00000438362 LRPPRCP42704 1394 aaKnown RBP8.28□□□□□ -1.08
CSDE1-205ENST00000438362 TRIM6-TRIM34B2RNG4 842 aa8.28□□□□□ -1.08
CSDE1-205ENST00000438362 GNAI1P63096 354 aa8.28□□□□□ -1.08
CSDE1-205ENST00000438362 PRAG1Q86YV5 1406 aa8.28□□□□□ -1.08
CSDE1-205ENST00000438362 TRAK2O60296 914 aa8.28□□□□□ -1.08
CSDE1-205ENST00000438362 SAMD9Q5K651 1589 aa8.27□□□□□ -1.08
CSDE1-205ENST00000438362 GOLGA6L4A6NEF3 574 aa8.27□□□□□ -1.09
CSDE1-205ENST00000438362 MRE11P49959 708 aa8.27□□□□□ -1.09
CSDE1-205ENST00000438362 SPATA31E1Q6ZUB1 1445 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 301.5 ms