RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 PRKD2Q9BZL6 878 aa13.74□□□□□ -0.21
LINC01040-201ENST00000425048 PCDHB3Q9Y5E6 796 aa13.74□□□□□ -0.21
LINC01040-201ENST00000425048 ZPR1O75312 459 aa13.72□□□□□ -0.21
LINC01040-201ENST00000425048 OATP04181 439 aa13.72□□□□□ -0.21
LINC01040-201ENST00000425048 GGCXP38435 758 aa13.72□□□□□ -0.21
LINC01040-201ENST00000425048 HIC1Q14526 733 aa13.71□□□□□ -0.21
LINC01040-201ENST00000425048 LAPTM4AQ15012 233 aa13.71□□□□□ -0.21
LINC01040-201ENST00000425048 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.7□□□□□ -0.22
LINC01040-201ENST00000425048 KMT5BQ4FZB7 885 aa13.69□□□□□ -0.22
LINC01040-201ENST00000425048 RBM26Q5T8P6 1007 aaKnown RBP13.69□□□□□ -0.22
LINC01040-201ENST00000425048 Q6ZNB5 142 aa13.69□□□□□ -0.22
LINC01040-201ENST00000425048 V9GY48 417 aaPredicted RBP13.69□□□□□ -0.22
LINC01040-201ENST00000425048 HAP1P54257 671 aaPredicted RBP13.68□□□□□ -0.22
LINC01040-201ENST00000425048 TMUB1Q9BVT8 246 aa13.68□□□□□ -0.22
LINC01040-201ENST00000425048 PXYLP1Q8TE99 480 aa13.67□□□□□ -0.22
LINC01040-201ENST00000425048 ACTN4O43707 911 aaKnown RBP13.66□□□□□ -0.22
LINC01040-201ENST00000425048 GFRA3O60609 400 aa13.66□□□□□ -0.22
LINC01040-201ENST00000425048 BLOC1S3Q6QNY0 202 aa13.66□□□□□ -0.22
LINC01040-201ENST00000425048 CFHP08603 1231 aa13.63□□□□□ -0.23
LINC01040-201ENST00000425048 RSPH4AQ5TD94 716 aa13.63□□□□□ -0.23
LINC01040-201ENST00000425048 GNPATO15228 680 aa13.62□□□□□ -0.23
LINC01040-201ENST00000425048 SLC10A3P09131 477 aa13.62□□□□□ -0.23
LINC01040-201ENST00000425048 METTL3Q86U44 580 aaKnown RBP13.61□□□□□ -0.23
LINC01040-201ENST00000425048 FECHP22830 423 aa13.58□□□□□ -0.24
LINC01040-201ENST00000425048 NRG2O14511 850 aaPredicted RBP13.56□□□□□ -0.24
LINC01040-201ENST00000425048 NR1I2O75469 434 aa13.56□□□□□ -0.24
LINC01040-201ENST00000425048 KDM2AQ9Y2K7 1162 aa13.56□□□□□ -0.24
LINC01040-201ENST00000425048 RNF223E7ERA6 249 aa13.55□□□□□ -0.24
LINC01040-201ENST00000425048 GPR37O15354 613 aa13.54□□□□□ -0.24
LINC01040-201ENST00000425048 TLL1O43897 1013 aa13.54□□□□□ -0.24
LINC01040-201ENST00000425048 DAXXQ9UER7 740 aaPredicted RBP13.54□□□□□ -0.24
LINC01040-201ENST00000425048 TRAF7Q6Q0C0 670 aa13.53□□□□□ -0.24
LINC01040-201ENST00000425048 SLC19A1P41440 591 aa13.51□□□□□ -0.25
LINC01040-201ENST00000425048 SCUBE3Q8IX30 993 aa13.51□□□□□ -0.25
LINC01040-201ENST00000425048 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
LINC01040-201ENST00000425048 GPIHBP1Q8IV16 184 aa13.5□□□□□ -0.25
LINC01040-201ENST00000425048 S1PR4O95977 384 aa13.49□□□□□ -0.25
LINC01040-201ENST00000425048 ADH1BP00325 375 aa13.49□□□□□ -0.25
LINC01040-201ENST00000425048 ANKLE1Q8NAG6 615 aa13.49□□□□□ -0.25
LINC01040-201ENST00000425048 RDH13Q8NBN7 331 aa13.48□□□□□ -0.25
LINC01040-201ENST00000425048 PPEF1O14829 653 aaPredicted RBP13.47□□□□□ -0.25
LINC01040-201ENST00000425048 PUS10Q3MIT2 529 aaKnown RBP13.47□□□□□ -0.25
LINC01040-201ENST00000425048 DDX11L8A8MPP1 907 aa13.46□□□□□ -0.25
LINC01040-201ENST00000425048 VSIG10Q8N0Z9 540 aa13.46□□□□□ -0.25
LINC01040-201ENST00000425048 SLC6A16Q9GZN6 736 aa13.45□□□□□ -0.26
LINC01040-201ENST00000425048 SPRYD7Q5W111 196 aa13.43□□□□□ -0.26
LINC01040-201ENST00000425048 SULF1Q8IWU6 871 aa13.43□□□□□ -0.26
LINC01040-201ENST00000425048 NLRP7Q8WX94 980 aa13.43□□□□□ -0.26
LINC01040-201ENST00000425048 EMID1Q96A84 441 aaPredicted RBP13.43□□□□□ -0.26
LINC01040-201ENST00000425048 TULP1O00294 542 aaPredicted RBP13.42□□□□□ -0.26
LINC01040-201ENST00000425048 LCE2BO14633 110 aa13.42□□□□□ -0.26
LINC01040-201ENST00000425048 PHOX2BQ99453 314 aa13.42□□□□□ -0.26
LINC01040-201ENST00000425048 SPSB2Q99619 263 aa13.42□□□□□ -0.26
LINC01040-201ENST00000425048 ZNF598Q86UK7 904 aaKnown RBP13.41□□□□□ -0.26
LINC01040-201ENST00000425048 ATP6V1AP38606 617 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 GCGRP47871 477 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 MORN1Q5T089 497 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 LIAT1Q6ZQX7 453 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 FUT2Q10981 343 aa13.39□□□□□ -0.27
LINC01040-201ENST00000425048 TRIM67Q6ZTA4 783 aa13.36□□□□□ -0.27
LINC01040-201ENST00000425048 ZNF697Q5TEC3 545 aa13.34□□□□□ -0.27
LINC01040-201ENST00000425048 FMNL1O95466 1100 aaPredicted RBP13.33□□□□□ -0.28
LINC01040-201ENST00000425048 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
LINC01040-201ENST00000425048 THAP11Q96EK4 314 aa13.33□□□□□ -0.28
LINC01040-201ENST00000425048 SLC27A5Q9Y2P5 690 aa13.33□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20EP86478 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20CP86479 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20DP86480 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20BP86481 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20AP86496 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 GRIPAP1Q4V328 841 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 SALL2Q9Y467 1007 aaPredicted RBP13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PLA2G2CQ5R387 149 aa13.31□□□□□ -0.28
LINC01040-201ENST00000425048 IRF6O14896 467 aa13.3□□□□□ -0.28
LINC01040-201ENST00000425048 MINK1Q8N4C8 1332 aaPredicted RBP13.29□□□□□ -0.28
LINC01040-201ENST00000425048 GDF9O60383 454 aa13.28□□□□□ -0.28
LINC01040-201ENST00000425048 DGAT1O75907 488 aa13.28□□□□□ -0.28
LINC01040-201ENST00000425048 PKDCCQ504Y2 493 aa13.28□□□□□ -0.28
LINC01040-201ENST00000425048 FAM160A2Q8N612 972 aaPredicted RBP13.28□□□□□ -0.28
LINC01040-201ENST00000425048 BRICD5Q6PL45 260 aa13.27□□□□□ -0.29
LINC01040-201ENST00000425048 CD46P15529 392 aa13.25□□□□□ -0.29
LINC01040-201ENST00000425048 RPIAP49247 311 aa13.25□□□□□ -0.29
LINC01040-201ENST00000425048 ZNF787Q6DD87 383 aa13.25□□□□□ -0.29
LINC01040-201ENST00000425048 TNFRSF10AO00220 468 aa13.24□□□□□ -0.29
LINC01040-201ENST00000425048 CD2BP2O95400 341 aaKnown RBP13.24□□□□□ -0.29
LINC01040-201ENST00000425048 FCF1Q9Y324 198 aaKnown RBP13.24□□□□□ -0.29
LINC01040-201ENST00000425048 MDM2Q00987 491 aaPredicted RBP13.22□□□□□ -0.29
LINC01040-201ENST00000425048 Q3C1V9 767 aa13.22□□□□□ -0.29
LINC01040-201ENST00000425048 KDM4AO75164 1064 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 MYT1Q01538 1121 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 MSS51Q4VC12 460 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 LMOD2Q6P5Q4 547 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 RNF19BQ6ZMZ0 732 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 FOXC1Q12948 553 aa13.2□□□□□ -0.3
LINC01040-201ENST00000425048 FAM187AA6NFU0 413 aa13.19□□□□□ -0.3
LINC01040-201ENST00000425048 CCDC102AQ96A19 550 aa13.18□□□□□ -0.3
LINC01040-201ENST00000425048 PRDM9Q9NQV7 894 aa13.18□□□□□ -0.3
LINC01040-201ENST00000425048 PKD2L1Q9P0L9 805 aa13.18□□□□□ -0.3
LINC01040-201ENST00000425048 ZBTB24O43167 697 aaPredicted RBP13.17□□□□□ -0.3
LINC01040-201ENST00000425048 USP46P62068 366 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms