RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 STK32BQ9NY57 414 aa9.26□□□□□ -0.93
SCN9A-202ENST00000409435 ZC3H6P61129 1189 aaKnown RBP9.25□□□□□ -0.93
SCN9A-202ENST00000409435 AMOTL2Q9Y2J4 779 aa9.25□□□□□ -0.93
SCN9A-202ENST00000409435 VPS8Q8N3P4 1428 aa9.25□□□□□ -0.93
SCN9A-202ENST00000409435 EXOC5O00471 708 aa9.25□□□□□ -0.93
SCN9A-202ENST00000409435 MIA2Q96PC5 1412 aa9.25□□□□□ -0.93
SCN9A-202ENST00000409435 SPG7Q9UQ90 795 aa9.24□□□□□ -0.93
SCN9A-202ENST00000409435 CHAF1AQ13111 956 aaPredicted RBP9.24□□□□□ -0.93
SCN9A-202ENST00000409435 KANK4Q5T7N3 995 aaPredicted RBP9.24□□□□□ -0.93
SCN9A-202ENST00000409435 GPR162Q16538 588 aa9.24□□□□□ -0.93
SCN9A-202ENST00000409435 ZNF644Q9H582 1327 aaPredicted RBP9.24□□□□□ -0.93
SCN9A-202ENST00000409435 AK7Q96M32 723 aa9.24□□□□□ -0.93
SCN9A-202ENST00000409435 AMOTL1Q8IY63 956 aa9.24□□□□□ -0.93
SCN9A-202ENST00000409435 CLEC11AQ9Y240 323 aa9.24□□□□□ -0.93
SCN9A-202ENST00000409435 STAC3Q96MF2 364 aa9.23□□□□□ -0.93
SCN9A-202ENST00000409435 UNC13AQ9UPW8 1703 aa9.23□□□□□ -0.93
SCN9A-202ENST00000409435 CCDC136Q96JN2 1154 aa9.23□□□□□ -0.93
SCN9A-202ENST00000409435 TROQ12816 1431 aaPredicted RBP9.23□□□□□ -0.93
SCN9A-202ENST00000409435 CERKQ8TCT0 537 aa9.23□□□□□ -0.93
SCN9A-202ENST00000409435 ANO8Q9HCE9 1232 aaPredicted RBP9.23□□□□□ -0.93
SCN9A-202ENST00000409435 TAOK2Q9UL54 1235 aa9.23□□□□□ -0.93
SCN9A-202ENST00000409435 CUX1P39880 1505 aa9.23□□□□□ -0.93
SCN9A-202ENST00000409435 KIF6Q6ZMV9 814 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 KRT28Q7Z3Y7 464 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 ERICH3Q5RHP9 1530 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 ZPR1O75312 459 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 GRM1Q13255 1194 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 PLEKHO1Q53GL0 409 aaPredicted RBP9.22□□□□□ -0.93
SCN9A-202ENST00000409435 FBXO31Q5XUX0 539 aaPredicted RBP9.22□□□□□ -0.93
SCN9A-202ENST00000409435 FGD1P98174 961 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 CASC1Q6TDU7 716 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 WDR7Q9Y4E6 1490 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 CABP4P57796 275 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 NEXNQ0ZGT2 675 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 TMEM132EQ6IEE7 984 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 CNTLNQ9NXG0 1405 aa9.22□□□□□ -0.93
SCN9A-202ENST00000409435 FOXO3O43524 673 aa9.21□□□□□ -0.93
SCN9A-202ENST00000409435 NPHP3Q7Z494 1330 aa9.21□□□□□ -0.93
SCN9A-202ENST00000409435 PRAM1Q96QH2 718 aa9.21□□□□□ -0.93
SCN9A-202ENST00000409435 TTLL12Q14166 644 aaPredicted RBP9.21□□□□□ -0.94
SCN9A-202ENST00000409435 KCNH5Q8NCM2 988 aa9.21□□□□□ -0.94
SCN9A-202ENST00000409435 FAM177BA6PVY3 158 aa9.21□□□□□ -0.94
SCN9A-202ENST00000409435 CGNL1Q0VF96 1302 aa9.21□□□□□ -0.94
SCN9A-202ENST00000409435 USP21Q9UK80 565 aa9.21□□□□□ -0.94
SCN9A-202ENST00000409435 WDR62O43379 1518 aa9.2□□□□□ -0.94
SCN9A-202ENST00000409435 HSP90AB1P08238 724 aaKnown RBP9.2□□□□□ -0.94
SCN9A-202ENST00000409435 MS4A1P11836 297 aa9.2□□□□□ -0.94
SCN9A-202ENST00000409435 PHF8Q9UPP1 1060 aa9.2□□□□□ -0.94
SCN9A-202ENST00000409435 CENPJQ9HC77 1338 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-202ENST00000409435 HECW1Q76N89 1606 aa9.2□□□□□ -0.94
SCN9A-202ENST00000409435 ZNF692Q9BU19 519 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-202ENST00000409435 ROCK1Q13464 1354 aa9.19□□□□□ -0.94
SCN9A-202ENST00000409435 NAP1L2Q9ULW6 460 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-202ENST00000409435 RPGRIP1LQ68CZ1 1315 aa9.19□□□□□ -0.94
SCN9A-202ENST00000409435 RAD21O60216 631 aa9.19□□□□□ -0.94
SCN9A-202ENST00000409435 DEKP35659 375 aaKnown RBP9.19□□□□□ -0.94
SCN9A-202ENST00000409435 FYCO1Q9BQS8 1478 aa9.19□□□□□ -0.94
SCN9A-202ENST00000409435 SIN3AQ96ST3 1273 aa9.19□□□□□ -0.94
SCN9A-202ENST00000409435 PODXL2Q9NZ53 605 aa9.19□□□□□ -0.94
SCN9A-202ENST00000409435 RRBP1Q9P2E9 1410 aaKnown RBP9.19□□□□□ -0.94
SCN9A-202ENST00000409435 GOLGA6L6A8MZA4 724 aa9.18□□□□□ -0.94
SCN9A-202ENST00000409435 KIF21AQ7Z4S6 1674 aa9.18□□□□□ -0.94
SCN9A-202ENST00000409435 L1TD1Q5T7N2 865 aaKnown RBP9.18□□□□□ -0.94
SCN9A-202ENST00000409435 C19orf44Q9H6X5 657 aa9.18□□□□□ -0.94
SCN9A-202ENST00000409435 MSNP26038 577 aaKnown RBP9.18□□□□□ -0.94
SCN9A-202ENST00000409435 DDX58O95786 925 aaKnown RBP9.18□□□□□ -0.94
SCN9A-202ENST00000409435 APPP05067 770 aa9.18□□□□□ -0.94
SCN9A-202ENST00000409435 ANKRD50Q9ULJ7 1429 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 RTEL1-TNFRSF6BF6WH68 1400 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 HNRNPUQ00839 825 aaKnown RBP eCLIP9.17□□□□□ -0.94
SCN9A-202ENST00000409435 VSIG10Q8N0Z9 540 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 ARHGEF11O15085 1522 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 EIF2S2P20042 333 aaKnown RBP9.17□□□□□ -0.94
SCN9A-202ENST00000409435 CABP2Q9NPB3 220 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 ZRSR1Q15695 479 aaKnown RBP9.17□□□□□ -0.94
SCN9A-202ENST00000409435 CUL7Q14999 1698 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 NRDCO43847 1150 aa9.17□□□□□ -0.94
SCN9A-202ENST00000409435 BICDL1Q6ZP65 573 aa9.16□□□□□ -0.94
SCN9A-202ENST00000409435 NCOA2Q15596 1464 aa9.16□□□□□ -0.94
SCN9A-202ENST00000409435 QTRT2Q9H974 415 aaKnown RBP9.16□□□□□ -0.94
SCN9A-202ENST00000409435 TFCP2L1Q9NZI6 479 aa9.16□□□□□ -0.94
SCN9A-202ENST00000409435 CDK19Q9BWU1 502 aa9.16□□□□□ -0.94
SCN9A-202ENST00000409435 KIF14Q15058 1648 aa9.15□□□□□ -0.94
SCN9A-202ENST00000409435 TMOD3Q9NYL9 352 aa9.15□□□□□ -0.94
SCN9A-202ENST00000409435 C9orf84Q5VXU9 1444 aa9.15□□□□□ -0.94
SCN9A-202ENST00000409435 EFCAB5A4FU69 1503 aa9.15□□□□□ -0.94
SCN9A-202ENST00000409435 CASKIN1Q8WXD9 1431 aa9.15□□□□□ -0.95
SCN9A-202ENST00000409435 ZNF652Q9Y2D9 606 aa9.15□□□□□ -0.95
SCN9A-202ENST00000409435 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.15□□□□□ -0.95
SCN9A-202ENST00000409435 PHF14O94880 888 aa9.14□□□□□ -0.95
SCN9A-202ENST00000409435 APBA3O96018 575 aa9.14□□□□□ -0.95
SCN9A-202ENST00000409435 SETQ01105 290 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-202ENST00000409435 VPS53Q5VIR6 699 aa9.14□□□□□ -0.95
SCN9A-202ENST00000409435 TCEAL9Q9UHQ7 104 aa9.14□□□□□ -0.95
SCN9A-202ENST00000409435 TRPC5Q9UL62 973 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-202ENST00000409435 FRAT1Q92837 279 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-202ENST00000409435 C11orf95C9JLR9 678 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-202ENST00000409435 RBM5P52756 815 aaKnown RBP eCLIP9.14□□□□□ -0.95
SCN9A-202ENST00000409435 UHRF1BP1LA0JNW5 1464 aa9.14□□□□□ -0.95
SCN9A-202ENST00000409435 HSP90AA2PQ14568 343 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms