RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PPP4R3BQ5MIZ7 849 aa11.44□□□□□ -0.58
COL28A1-201ENST00000399429 PDCL2Q8N4E4 241 aa11.44□□□□□ -0.58
COL28A1-201ENST00000399429 SSFA2P28290 1259 aa11.44□□□□□ -0.58
COL28A1-201ENST00000399429 MCCP23508 829 aa11.44□□□□□ -0.58
COL28A1-201ENST00000399429 ZRSR1Q15695 479 aaKnown RBP11.44□□□□□ -0.58
COL28A1-201ENST00000399429 PPP2R1AP30153 589 aa11.43□□□□□ -0.58
COL28A1-201ENST00000399429 SYCE3A1L190 88 aa11.43□□□□□ -0.58
COL28A1-201ENST00000399429 SLFN5Q08AF3 891 aa11.43□□□□□ -0.58
COL28A1-201ENST00000399429 CIZ1Q9ULV3 898 aaPredicted RBP11.43□□□□□ -0.58
COL28A1-201ENST00000399429 PLEKHD1A6NEE1 506 aa11.43□□□□□ -0.58
COL28A1-201ENST00000399429 K7ELQ4 463 aaPredicted RBP11.43□□□□□ -0.58
COL28A1-201ENST00000399429 CCDC66A2RUB6 948 aa11.42□□□□□ -0.58
COL28A1-201ENST00000399429 SMAP1Q8IYB5 467 aaPredicted RBP11.42□□□□□ -0.58
COL28A1-201ENST00000399429 DDX19BQ9UMR2 479 aa11.42□□□□□ -0.58
COL28A1-201ENST00000399429 CFAP44Q96MT7 982 aa11.42□□□□□ -0.58
COL28A1-201ENST00000399429 ERICH4A6NGS2 130 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 NBPF1Q3BBV0 1214 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 IFT57Q9NWB7 429 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 AAMPQ13685 434 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 CHMP3Q9Y3E7 222 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 KIF16BQ96L93 1317 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 TRERF1Q96PN7 1200 aa11.41□□□□□ -0.58
COL28A1-201ENST00000399429 NCOA2Q15596 1464 aa11.4□□□□□ -0.58
COL28A1-201ENST00000399429 VGLL3A8MV65 326 aa11.4□□□□□ -0.58
COL28A1-201ENST00000399429 ELL2O00472 640 aaPredicted RBP11.4□□□□□ -0.58
COL28A1-201ENST00000399429 TSPY26PQ9H489 355 aa11.4□□□□□ -0.58
COL28A1-201ENST00000399429 FAM177BA6PVY3 158 aa11.4□□□□□ -0.58
COL28A1-201ENST00000399429 AEBP1Q8IUX7 1158 aa11.4□□□□□ -0.58
COL28A1-201ENST00000399429 SPC24Q8NBT2 197 aa11.4□□□□□ -0.58
COL28A1-201ENST00000399429 KDM2BQ8NHM5 1336 aa11.4□□□□□ -0.59
COL28A1-201ENST00000399429 FGD1P98174 961 aa11.4□□□□□ -0.59
COL28A1-201ENST00000399429 CFTRP13569 1480 aa11.4□□□□□ -0.59
COL28A1-201ENST00000399429 NPHP1O15259 732 aa11.39□□□□□ -0.59
COL28A1-201ENST00000399429 EIF4G1Q04637 1599 aaKnown RBP11.39□□□□□ -0.59
COL28A1-201ENST00000399429 NRDCO43847 1150 aa11.39□□□□□ -0.59
COL28A1-201ENST00000399429 CHMP4AQ9BY43 222 aa11.39□□□□□ -0.59
COL28A1-201ENST00000399429 ANKRD30AQ9BXX3 1397 aa11.39□□□□□ -0.59
COL28A1-201ENST00000399429 CCDC94Q9BW85 323 aaPredicted RBP11.39□□□□□ -0.59
COL28A1-201ENST00000399429 MIA2Q96PC5 1412 aa11.38□□□□□ -0.59
COL28A1-201ENST00000399429 AQRO60306 1485 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL28A1-201ENST00000399429 RBM27Q9P2N5 1060 aaKnown RBP11.38□□□□□ -0.59
COL28A1-201ENST00000399429 FSD2A1L4K1 749 aa11.37□□□□□ -0.59
COL28A1-201ENST00000399429 KCNJ4P48050 445 aa11.37□□□□□ -0.59
COL28A1-201ENST00000399429 MBD3O95983 291 aa11.37□□□□□ -0.59
COL28A1-201ENST00000399429 ZNF830Q96NB3 372 aaPredicted RBP11.37□□□□□ -0.59
COL28A1-201ENST00000399429 ERBB4Q15303 1308 aa11.37□□□□□ -0.59
COL28A1-201ENST00000399429 NAP1L2Q9ULW6 460 aaPredicted RBP11.37□□□□□ -0.59
COL28A1-201ENST00000399429 ZKSCAN5Q9Y2L8 839 aa11.37□□□□□ -0.59
COL28A1-201ENST00000399429 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.36□□□□□ -0.59
COL28A1-201ENST00000399429 TRIM6-TRIM34B2RNG4 842 aa11.36□□□□□ -0.59
COL28A1-201ENST00000399429 BAG4O95429 457 aaKnown RBP11.36□□□□□ -0.59
COL28A1-201ENST00000399429 KLHL40Q2TBA0 621 aa11.36□□□□□ -0.59
COL28A1-201ENST00000399429 TAF3Q5VWG9 929 aa11.36□□□□□ -0.59
COL28A1-201ENST00000399429 GAS2L3Q86XJ1 694 aa11.36□□□□□ -0.59
COL28A1-201ENST00000399429 DHX29Q7Z478 1369 aaKnown RBP11.36□□□□□ -0.59
COL28A1-201ENST00000399429 TCP11L2Q8N4U5 519 aa11.36□□□□□ -0.59
COL28A1-201ENST00000399429 LRPPRCP42704 1394 aaKnown RBP11.36□□□□□ -0.59
COL28A1-201ENST00000399429 TSC1Q92574 1164 aa11.35□□□□□ -0.59
COL28A1-201ENST00000399429 TAOK2Q9UL54 1235 aa11.35□□□□□ -0.59
COL28A1-201ENST00000399429 PCDHB15Q9Y5E8 787 aa11.35□□□□□ -0.59
COL28A1-201ENST00000399429 ANKRD30BQ9BXX2 1392 aa11.35□□□□□ -0.59
COL28A1-201ENST00000399429 CASKIN1Q8WXD9 1431 aa11.35□□□□□ -0.59
COL28A1-201ENST00000399429 HTATSF1O43719 755 aaKnown RBP11.35□□□□□ -0.59
COL28A1-201ENST00000399429 ZSCAN23Q3MJ62 389 aa11.35□□□□□ -0.59
COL28A1-201ENST00000399429 PTPRKQ15262 1439 aa11.34□□□□□ -0.59
COL28A1-201ENST00000399429 LETM1O95202 739 aaPredicted RBP11.34□□□□□ -0.59
COL28A1-201ENST00000399429 CDC45O75419 566 aa11.34□□□□□ -0.59
COL28A1-201ENST00000399429 PDIA4P13667 645 aaKnown RBP11.34□□□□□ -0.59
COL28A1-201ENST00000399429 PRIM1P49642 420 aaKnown RBP11.34□□□□□ -0.59
COL28A1-201ENST00000399429 MVPQ14764 893 aaKnown RBP11.34□□□□□ -0.59
COL28A1-201ENST00000399429 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.34□□□□□ -0.59
COL28A1-201ENST00000399429 SAFB2Q14151 953 aaKnown RBP eCLIP11.34□□□□□ -0.59
COL28A1-201ENST00000399429 NGEFQ8N5V2 710 aa11.34□□□□□ -0.59
COL28A1-201ENST00000399429 C1orf115Q9H7X2 142 aa11.34□□□□□ -0.59
COL28A1-201ENST00000399429 RUNDC1Q96C34 613 aa11.33□□□□□ -0.6
COL28A1-201ENST00000399429 RABEP1Q15276 862 aa11.33□□□□□ -0.6
COL28A1-201ENST00000399429 GTPBP4Q9BZE4 634 aaKnown RBP11.33□□□□□ -0.6
COL28A1-201ENST00000399429 USP25Q9UHP3 1055 aa11.33□□□□□ -0.6
COL28A1-201ENST00000399429 NEK4P51957 841 aa11.33□□□□□ -0.6
COL28A1-201ENST00000399429 TSR2Q969E8 191 aaKnown RBP11.33□□□□□ -0.6
COL28A1-201ENST00000399429 REC8O95072 547 aa11.32□□□□□ -0.6
COL28A1-201ENST00000399429 APPP05067 770 aa11.32□□□□□ -0.6
COL28A1-201ENST00000399429 MCM5P33992 734 aa11.32□□□□□ -0.6
COL28A1-201ENST00000399429 TPD52L1Q16890 204 aaPredicted RBP11.32□□□□□ -0.6
COL28A1-201ENST00000399429 CCDC144AA2RUR9 1427 aa11.32□□□□□ -0.6
COL28A1-201ENST00000399429 HNRNPMP52272 730 aaKnown RBP eCLIP11.32□□□□□ -0.6
COL28A1-201ENST00000399429 NOL7Q9UMY1 257 aaKnown RBP11.32□□□□□ -0.6
COL28A1-201ENST00000399429 TDRD9Q8NDG6 1382 aaKnown RBP11.32□□□□□ -0.6
COL28A1-201ENST00000399429 TEX35Q5T0J7 233 aa11.32□□□□□ -0.6
COL28A1-201ENST00000399429 RILPL2Q969X0 211 aa11.32□□□□□ -0.6
COL28A1-201ENST00000399429 RBM42Q9BTD8 480 aaKnown RBP11.32□□□□□ -0.6
COL28A1-201ENST00000399429 WWC1Q8IX03 1113 aa11.31□□□□□ -0.6
COL28A1-201ENST00000399429 RARSP54136 660 aaKnown RBP11.31□□□□□ -0.6
COL28A1-201ENST00000399429 INTS3Q68E01 1043 aaKnown RBP11.31□□□□□ -0.6
COL28A1-201ENST00000399429 CCDC112Q8NEF3 446 aa11.31□□□□□ -0.6
COL28A1-201ENST00000399429 EXOSC9Q06265 439 aaKnown RBP11.3□□□□□ -0.6
COL28A1-201ENST00000399429 ANTXR1Q9H6X2 564 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 CUX1P39880 1505 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 CHD1LQ86WJ1 897 aa11.3□□□□□ -0.6
COL28A1-201ENST00000399429 TTC12Q9H892 705 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms