RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 ADAMTS8Q9UP79 889 aa21.46■■□□□ 1.03
NKX3-1-201ENST00000380871 ATP10AO60312 1499 aa21.46■■□□□ 1.03
NKX3-1-201ENST00000380871 ZFYVE16Q7Z3T8 1539 aa21.45■■□□□ 1.02
NKX3-1-201ENST00000380871 RTL5Q5HYW3 569 aaPredicted RBP21.45■■□□□ 1.02
NKX3-1-201ENST00000380871 UGGT1Q9NYU2 1555 aa21.45■■□□□ 1.02
NKX3-1-201ENST00000380871 ATP7AQ04656 1500 aa21.44■■□□□ 1.02
NKX3-1-201ENST00000380871 RTEL1-TNFRSF6BF6WH68 1400 aa21.44■■□□□ 1.02
NKX3-1-201ENST00000380871 TRAK1Q9UPV9 953 aa21.44■■□□□ 1.02
NKX3-1-201ENST00000380871 WASHC2CQ9Y4E1 1318 aa21.43■■□□□ 1.02
NKX3-1-201ENST00000380871 TMEM132EQ6IEE7 984 aa21.43■■□□□ 1.02
NKX3-1-201ENST00000380871 CD109Q6YHK3 1445 aa21.43■■□□□ 1.02
NKX3-1-201ENST00000380871 MAGI2Q86UL8 1455 aa21.4■■□□□ 1.02
NKX3-1-201ENST00000380871 TNNT2P45379 298 aaPredicted RBP21.39■■□□□ 1.02
NKX3-1-201ENST00000380871 CFAP65Q6ZU64 1925 aaKnown RBP21.39■■□□□ 1.02
NKX3-1-201ENST00000380871 PLEKHH1Q9ULM0 1364 aa21.39■■□□□ 1.01
NKX3-1-201ENST00000380871 SAFB2Q14151 953 aaKnown RBP eCLIP21.39■■□□□ 1.01
NKX3-1-201ENST00000380871 LAMC1P11047 1609 aa21.38■■□□□ 1.01
NKX3-1-201ENST00000380871 ZMYM4Q5VZL5 1548 aa21.37■■□□□ 1.01
NKX3-1-201ENST00000380871 MS4A1P11836 297 aa21.37■■□□□ 1.01
NKX3-1-201ENST00000380871 PPP2R1AP30153 589 aa21.36■■□□□ 1.01
NKX3-1-201ENST00000380871 WDR43Q15061 677 aaKnown RBP eCLIP21.36■■□□□ 1.01
NKX3-1-201ENST00000380871 EIF2AK4Q9P2K8 1649 aaKnown RBP21.35■■□□□ 1.01
NKX3-1-201ENST00000380871 CCDC146Q8IYE0 955 aa21.35■■□□□ 1.01
NKX3-1-201ENST00000380871 CDCA8Q53HL2 280 aa21.34■■□□□ 1.01
NKX3-1-201ENST00000380871 NEFMP07197 916 aa21.33■■□□□ 1.01
NKX3-1-201ENST00000380871 CLTCL1P53675 1640 aa21.33■■□□□ 1.01
NKX3-1-201ENST00000380871 DUSP27Q5VZP5 1158 aa21.32■■□□□ 1
NKX3-1-201ENST00000380871 AMER1Q5JTC6 1135 aaPredicted RBP21.32■■□□□ 1
NKX3-1-201ENST00000380871 PTPRTO14522 1441 aa21.31■■□□□ 1
NKX3-1-201ENST00000380871 RNF17Q9BXT8 1623 aaKnown RBP21.31■■□□□ 1
NKX3-1-201ENST00000380871 STK26Q9P289 416 aa21.31■■□□□ 1
NKX3-1-201ENST00000380871 SLC4A3P48751 1232 aa21.3■■□□□ 1
NKX3-1-201ENST00000380871 ABCA9Q8IUA7 1624 aa21.3■■□□□ 1
NKX3-1-201ENST00000380871 SCAF11Q99590 1463 aaKnown RBP21.3■■□□□ 1
NKX3-1-201ENST00000380871 TRPM2O94759 1503 aa21.29■■□□□ 1
NKX3-1-201ENST00000380871 NOS1P29475 1434 aa21.29■■□□□ 1
NKX3-1-201ENST00000380871 INSRP06213 1382 aa21.28■■□□□ 1
NKX3-1-201ENST00000380871 KDM2BQ8NHM5 1336 aa21.28■■□□□ 1
NKX3-1-201ENST00000380871 ZNF518AQ6AHZ1 1483 aa21.28■■□□□ 1
NKX3-1-201ENST00000380871 ARAP3Q8WWN8 1544 aa21.27■■□□□ 1
NKX3-1-201ENST00000380871 MLECQ14165 292 aa21.26■□□□□ 0.99
NKX3-1-201ENST00000380871 SPINK5Q9NQ38 1064 aaPredicted RBP21.26■□□□□ 0.99
NKX3-1-201ENST00000380871 MADDQ8WXG6 1647 aa21.26■□□□□ 0.99
NKX3-1-201ENST00000380871 EIF3AQ14152 1382 aaKnown RBP21.26■□□□□ 0.99
NKX3-1-201ENST00000380871 SLC12A5Q9H2X9 1139 aa21.26■□□□□ 0.99
NKX3-1-201ENST00000380871 ZNF521Q96K83 1311 aa21.25■□□□□ 0.99
NKX3-1-201ENST00000380871 INO80Q9ULG1 1556 aaPredicted RBP21.25■□□□□ 0.99
NKX3-1-201ENST00000380871 GOLGA2Q08379 1002 aa21.24■□□□□ 0.99
NKX3-1-201ENST00000380871 SPHKAPQ2M3C7 1700 aa21.24■□□□□ 0.99
NKX3-1-201ENST00000380871 CARD14Q9BXL6 1004 aa21.23■□□□□ 0.99
NKX3-1-201ENST00000380871 FAM69CQ0P6D2 419 aa21.23■□□□□ 0.99
NKX3-1-201ENST00000380871 CENPJQ9HC77 1338 aaPredicted RBP21.23■□□□□ 0.99
NKX3-1-201ENST00000380871 STAC3Q96MF2 364 aa21.23■□□□□ 0.99
NKX3-1-201ENST00000380871 IQGAP1P46940 1657 aa21.22■□□□□ 0.99
NKX3-1-201ENST00000380871 NEUROD2Q15784 382 aa21.22■□□□□ 0.99
NKX3-1-201ENST00000380871 TET3O43151 1660 aa21.22■□□□□ 0.99
NKX3-1-201ENST00000380871 IL27Q8NEV9 243 aa21.22■□□□□ 0.99
NKX3-1-201ENST00000380871 NPATQ14207 1427 aa21.21■□□□□ 0.99
NKX3-1-201ENST00000380871 KIDINS220Q9ULH0 1771 aa21.21■□□□□ 0.99
NKX3-1-201ENST00000380871 APAF1O14727 1248 aa21.2■□□□□ 0.98
NKX3-1-201ENST00000380871 RGS3P49796 1198 aa21.2■□□□□ 0.98
NKX3-1-201ENST00000380871 POGZQ7Z3K3 1410 aa21.2■□□□□ 0.98
NKX3-1-201ENST00000380871 DMRT2Q9Y5R5 561 aa21.2■□□□□ 0.98
NKX3-1-201ENST00000380871 STAG3Q9UJ98 1225 aa21.19■□□□□ 0.98
NKX3-1-201ENST00000380871 SLFN5Q08AF3 891 aa21.19■□□□□ 0.98
NKX3-1-201ENST00000380871 IDI1Q13907 227 aa21.19■□□□□ 0.98
NKX3-1-201ENST00000380871 CENPQQ7L2Z9 268 aaPredicted RBP21.19■□□□□ 0.98
NKX3-1-201ENST00000380871 BCAR3O75815 825 aa21.19■□□□□ 0.98
NKX3-1-201ENST00000380871 ASXL1Q8IXJ9 1541 aa21.19■□□□□ 0.98
NKX3-1-201ENST00000380871 FBXO31Q5XUX0 539 aaPredicted RBP21.18■□□□□ 0.98
NKX3-1-201ENST00000380871 C8orf34Q49A92 452 aa21.17■□□□□ 0.98
NKX3-1-201ENST00000380871 SYNMO15061 1565 aa21.17■□□□□ 0.98
NKX3-1-201ENST00000380871 MYOM1P52179 1685 aa21.16■□□□□ 0.98
NKX3-1-201ENST00000380871 MROH1Q8NDA8 1641 aa21.16■□□□□ 0.98
NKX3-1-201ENST00000380871 MORC1Q86VD1 984 aa21.16■□□□□ 0.98
NKX3-1-201ENST00000380871 RTN4Q9NQC3 1192 aaKnown RBP21.16■□□□□ 0.98
NKX3-1-201ENST00000380871 CABP2Q9NPB3 220 aa21.15■□□□□ 0.98
NKX3-1-201ENST00000380871 CEP152O94986 1710 aa21.14■□□□□ 0.97
NKX3-1-201ENST00000380871 DEPDC5O75140 1603 aa21.14■□□□□ 0.97
NKX3-1-201ENST00000380871 DDRGK1Q96HY6 314 aa21.14■□□□□ 0.97
NKX3-1-201ENST00000380871 C14orf93Q9H972 538 aaKnown RBP21.14■□□□□ 0.97
NKX3-1-201ENST00000380871 PPM1GO15355 546 aaPredicted RBP21.14■□□□□ 0.97
NKX3-1-201ENST00000380871 PPRC1Q5VV67 1664 aaKnown RBP21.14■□□□□ 0.97
NKX3-1-201ENST00000380871 PIK3C2GO75747 1445 aa21.13■□□□□ 0.97
NKX3-1-201ENST00000380871 RRP7AQ9Y3A4 280 aaKnown RBP21.13■□□□□ 0.97
NKX3-1-201ENST00000380871 EFCAB6Q5THR3 1501 aa21.13■□□□□ 0.97
NKX3-1-201ENST00000380871 YEATS2Q9ULM3 1422 aa21.13■□□□□ 0.97
NKX3-1-201ENST00000380871 VWDEQ8N2E2 1590 aa21.12■□□□□ 0.97
NKX3-1-201ENST00000380871 USP35Q9P2H5 1018 aa21.12■□□□□ 0.97
NKX3-1-201ENST00000380871 FAM161AQ3B820 660 aa21.12■□□□□ 0.97
NKX3-1-201ENST00000380871 TRMT2AQ8IZ69 625 aaKnown RBP21.11■□□□□ 0.97
NKX3-1-201ENST00000380871 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.11■□□□□ 0.97
NKX3-1-201ENST00000380871 VGFO15240 615 aaPredicted RBP21.1■□□□□ 0.97
NKX3-1-201ENST00000380871 SRPK2P78362 688 aaKnown RBP21.1■□□□□ 0.97
NKX3-1-201ENST00000380871 ERVK-7P63135 1459 aa21.1■□□□□ 0.97
NKX3-1-201ENST00000380871 NFKBIBQ15653 356 aa21.09■□□□□ 0.97
NKX3-1-201ENST00000380871 MINK1Q8N4C8 1332 aaPredicted RBP21.09■□□□□ 0.97
NKX3-1-201ENST00000380871 PLPPR3Q6T4P5 718 aa21.09■□□□□ 0.97
NKX3-1-201ENST00000380871 ABCA6Q8N139 1617 aa21.08■□□□□ 0.96
NKX3-1-201ENST00000380871 NKTRP30414 1462 aaKnown RBP21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms