RNA–Protein interactions for RNA: ENST00000380747.5

HMGN1-202, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3 BASIC

Gene HMGN1, Length 709 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-202ENST00000380747 IQGAP1P46940 1657 aa13.89□□□□□ -0.19
HMGN1-202ENST00000380747 SYNMO15061 1565 aa13.89□□□□□ -0.19
HMGN1-202ENST00000380747 ERVK-7P63135 1459 aa13.89□□□□□ -0.19
HMGN1-202ENST00000380747 LMTK2Q8IWU2 1503 aa13.89□□□□□ -0.19
HMGN1-202ENST00000380747 NAIPQ13075 1403 aa13.89□□□□□ -0.19
HMGN1-202ENST00000380747 UNC13BO14795 1591 aa13.88□□□□□ -0.19
HMGN1-202ENST00000380747 NUP155O75694 1391 aa13.88□□□□□ -0.19
HMGN1-202ENST00000380747 ARHGAP31Q2M1Z3 1444 aa13.88□□□□□ -0.19
HMGN1-202ENST00000380747 HFM1A2PYH4 1435 aa13.86□□□□□ -0.19
HMGN1-202ENST00000380747 GCC2Q8IWJ2 1684 aa13.85□□□□□ -0.19
HMGN1-202ENST00000380747 EFCAB6Q5THR3 1501 aa13.85□□□□□ -0.19
HMGN1-202ENST00000380747 POLA2Q14181 598 aa13.84□□□□□ -0.19
HMGN1-202ENST00000380747 TRIM52Q96A61 297 aa13.84□□□□□ -0.19
HMGN1-202ENST00000380747 STRCP1A6NGW2 1772 aa13.83□□□□□ -0.19
HMGN1-202ENST00000380747 TET3O43151 1660 aa13.82□□□□□ -0.2
HMGN1-202ENST00000380747 SCAF11Q99590 1463 aaKnown RBP13.82□□□□□ -0.2
HMGN1-202ENST00000380747 IQGAP3Q86VI3 1631 aa13.82□□□□□ -0.2
HMGN1-202ENST00000380747 ARHGAP23Q9P227 1491 aa13.81□□□□□ -0.2
HMGN1-202ENST00000380747 SLIT1O75093 1534 aa13.81□□□□□ -0.2
HMGN1-202ENST00000380747 CFAP65Q6ZU64 1925 aaKnown RBP13.81□□□□□ -0.2
HMGN1-202ENST00000380747 RPRD2Q5VT52 1461 aaKnown RBP13.8□□□□□ -0.2
HMGN1-202ENST00000380747 NOS1P29475 1434 aa13.8□□□□□ -0.2
HMGN1-202ENST00000380747 RGS17Q9UGC6 210 aaPredicted RBP13.79□□□□□ -0.2
HMGN1-202ENST00000380747 STAG3Q9UJ98 1225 aa13.79□□□□□ -0.2
HMGN1-202ENST00000380747 FAM135BQ49AJ0 1406 aa13.79□□□□□ -0.2
HMGN1-202ENST00000380747 UBR1Q8IWV7 1749 aa13.78□□□□□ -0.2
HMGN1-202ENST00000380747 MKRN4PQ13434 485 aaPredicted RBP13.78□□□□□ -0.2
HMGN1-202ENST00000380747 IDI1Q13907 227 aa13.78□□□□□ -0.2
HMGN1-202ENST00000380747 E9PCH4 1651 aa13.77□□□□□ -0.21
HMGN1-202ENST00000380747 CACNB1Q02641 598 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-202ENST00000380747 SETD5Q9C0A6 1442 aa13.76□□□□□ -0.21
HMGN1-202ENST00000380747 LTKP29376 864 aa13.76□□□□□ -0.21
HMGN1-202ENST00000380747 SLC52A1Q9NWF4 448 aa13.76□□□□□ -0.21
HMGN1-202ENST00000380747 PIK3C2BO00750 1634 aa13.75□□□□□ -0.21
HMGN1-202ENST00000380747 TXNDC2Q86VQ3 553 aa13.75□□□□□ -0.21
HMGN1-202ENST00000380747 ABCB7O75027 752 aa13.74□□□□□ -0.21
HMGN1-202ENST00000380747 CHGAP10645 457 aaKnown RBP13.74□□□□□ -0.21
HMGN1-202ENST00000380747 EID1Q9Y6B2 187 aa13.73□□□□□ -0.21
HMGN1-202ENST00000380747 TMEM2Q9UHN6 1383 aa13.72□□□□□ -0.21
HMGN1-202ENST00000380747 XIRP1Q702N8 1843 aaKnown RBP13.72□□□□□ -0.21
HMGN1-202ENST00000380747 RAB3GAP2Q9H2M9 1393 aa13.71□□□□□ -0.21
HMGN1-202ENST00000380747 ADGRB3O60242 1522 aa13.71□□□□□ -0.21
HMGN1-202ENST00000380747 KDM5AP29375 1690 aaKnown RBP13.71□□□□□ -0.21
HMGN1-202ENST00000380747 MPHOSPH9Q99550 1183 aa13.7□□□□□ -0.22
HMGN1-202ENST00000380747 TMEM94Q12767 1356 aa13.7□□□□□ -0.22
HMGN1-202ENST00000380747 KCNA6P17658 529 aa13.69□□□□□ -0.22
HMGN1-202ENST00000380747 ACIN1Q9UKV3 1341 aaKnown RBP13.68□□□□□ -0.22
HMGN1-202ENST00000380747 POTEAQ6S8J7 498 aa13.68□□□□□ -0.22
HMGN1-202ENST00000380747 NKTRP30414 1462 aaKnown RBP13.67□□□□□ -0.22
HMGN1-202ENST00000380747 SPHKAPQ2M3C7 1700 aa13.67□□□□□ -0.22
HMGN1-202ENST00000380747 TRPM2O94759 1503 aa13.66□□□□□ -0.22
HMGN1-202ENST00000380747 TMEM131LA2VDJ0 1609 aa13.66□□□□□ -0.22
HMGN1-202ENST00000380747 PPP1R15AO75807 674 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-202ENST00000380747 BCANQ96GW7 911 aa13.65□□□□□ -0.22
HMGN1-202ENST00000380747 NWD1Q149M9 1564 aa13.65□□□□□ -0.22
HMGN1-202ENST00000380747 ROBO1Q9Y6N7 1651 aa13.65□□□□□ -0.22
HMGN1-202ENST00000380747 RIMS2Q9UQ26 1411 aa13.64□□□□□ -0.23
HMGN1-202ENST00000380747 SPDYE4A6NLX3 237 aa13.64□□□□□ -0.23
HMGN1-202ENST00000380747 HDGFP51858 240 aaKnown RBP13.64□□□□□ -0.23
HMGN1-202ENST00000380747 ZNF326Q5BKZ1 582 aaKnown RBP13.64□□□□□ -0.23
HMGN1-202ENST00000380747 NUTM2DQ5VT03 806 aaPredicted RBP13.64□□□□□ -0.23
HMGN1-202ENST00000380747 CLTCL1P53675 1640 aa13.63□□□□□ -0.23
HMGN1-202ENST00000380747 MYO5BQ9ULV0 1848 aa13.62□□□□□ -0.23
HMGN1-202ENST00000380747 HRCP23327 699 aa13.62□□□□□ -0.23
HMGN1-202ENST00000380747 DSG3P32926 999 aa13.62□□□□□ -0.23
HMGN1-202ENST00000380747 PROSER2Q86WR7 435 aaPredicted RBP13.62□□□□□ -0.23
HMGN1-202ENST00000380747 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.62□□□□□ -0.23
HMGN1-202ENST00000380747 ZFYVE9O95405 1425 aa13.62□□□□□ -0.23
HMGN1-202ENST00000380747 MSH6P52701 1360 aa13.61□□□□□ -0.23
HMGN1-202ENST00000380747 JCADQ9P266 1359 aa13.61□□□□□ -0.23
HMGN1-202ENST00000380747 CCDC144AA2RUR9 1427 aa13.6□□□□□ -0.23
HMGN1-202ENST00000380747 SLC26A8Q96RN1 970 aa13.6□□□□□ -0.23
HMGN1-202ENST00000380747 SRCAPQ6ZRS2 3230 aa13.59□□□□□ -0.23
HMGN1-202ENST00000380747 NCOA3Q9Y6Q9 1424 aa13.59□□□□□ -0.23
HMGN1-202ENST00000380747 SLAIN2Q9P270 581 aa13.59□□□□□ -0.23
HMGN1-202ENST00000380747 ZBTB12Q9Y330 459 aaPredicted RBP13.59□□□□□ -0.23
HMGN1-202ENST00000380747 PLEKHG1Q9ULL1 1385 aa13.58□□□□□ -0.23
HMGN1-202ENST00000380747 TRIM26Q12899 539 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-202ENST00000380747 KIF1BO60333 1816 aa13.56□□□□□ -0.24
HMGN1-202ENST00000380747 SPATA31A6Q5VVP1 1343 aa13.56□□□□□ -0.24
HMGN1-202ENST00000380747 COL16A1Q07092 1604 aaPredicted RBP13.55□□□□□ -0.24
HMGN1-202ENST00000380747 RGL3Q3MIN7 710 aa13.55□□□□□ -0.24
HMGN1-202ENST00000380747 RBM33Q96EV2 1170 aaKnown RBP13.55□□□□□ -0.24
HMGN1-202ENST00000380747 PHLPP1O60346 1717 aa13.55□□□□□ -0.24
HMGN1-202ENST00000380747 NEXMIFQ5QGS0 1516 aa13.54□□□□□ -0.24
HMGN1-202ENST00000380747 TBX22Q9Y458 520 aa13.53□□□□□ -0.24
HMGN1-202ENST00000380747 SETD1AO15047 1707 aaKnown RBP13.53□□□□□ -0.24
HMGN1-202ENST00000380747 CHD2O14647 1828 aaKnown RBP13.53□□□□□ -0.24
HMGN1-202ENST00000380747 VGFO15240 615 aaPredicted RBP13.52□□□□□ -0.25
HMGN1-202ENST00000380747 ZNF772Q68DY9 489 aaPredicted RBP13.52□□□□□ -0.25
HMGN1-202ENST00000380747 RPGRIP1LQ68CZ1 1315 aa13.52□□□□□ -0.25
HMGN1-202ENST00000380747 LRP6O75581 1613 aa13.51□□□□□ -0.25
HMGN1-202ENST00000380747 AHDC1Q5TGY3 1603 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-202ENST00000380747 ADAMTS13Q76LX8 1427 aa13.51□□□□□ -0.25
HMGN1-202ENST00000380747 PIK3R4Q99570 1358 aa13.51□□□□□ -0.25
HMGN1-202ENST00000380747 ANKRD30BQ9BXX2 1392 aa13.51□□□□□ -0.25
HMGN1-202ENST00000380747 SPATA31E1Q6ZUB1 1445 aa13.5□□□□□ -0.25
HMGN1-202ENST00000380747 CADPS2Q86UW7 1296 aa13.5□□□□□ -0.25
HMGN1-202ENST00000380747 UPF1Q92900 1129 aaKnown RBP eCLIP13.5□□□□□ -0.25
HMGN1-202ENST00000380747 CDK12Q9NYV4 1490 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 210.1 ms