RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 MAGI2Q86UL8 1455 aa18.74■□□□□ 0.59
CLCNKA-202ENST00000375692 RGL3Q3MIN7 710 aa18.74■□□□□ 0.59
CLCNKA-202ENST00000375692 LAS1LQ9Y4W2 734 aaKnown RBP18.73■□□□□ 0.59
CLCNKA-202ENST00000375692 FRMPD1Q5SYB0 1578 aa18.73■□□□□ 0.59
CLCNKA-202ENST00000375692 PLA2R1Q13018 1463 aa18.73■□□□□ 0.59
CLCNKA-202ENST00000375692 ABCA6Q8N139 1617 aa18.73■□□□□ 0.59
CLCNKA-202ENST00000375692 CC2D1BQ5T0F9 858 aaKnown RBP18.73■□□□□ 0.59
CLCNKA-202ENST00000375692 BACH2Q9BYV9 841 aa18.72■□□□□ 0.59
CLCNKA-202ENST00000375692 PER1O15534 1290 aaPredicted RBP18.72■□□□□ 0.59
CLCNKA-202ENST00000375692 PARD3Q8TEW0 1356 aa18.71■□□□□ 0.59
CLCNKA-202ENST00000375692 IQGAP3Q86VI3 1631 aa18.71■□□□□ 0.59
CLCNKA-202ENST00000375692 PDE3BQ13370 1112 aa18.7■□□□□ 0.58
CLCNKA-202ENST00000375692 E9PCH4 1651 aa18.69■□□□□ 0.58
CLCNKA-202ENST00000375692 DIP2CQ9Y2E4 1556 aa18.68■□□□□ 0.58
CLCNKA-202ENST00000375692 MROH1Q8NDA8 1641 aa18.68■□□□□ 0.58
CLCNKA-202ENST00000375692 KANK1Q14678 1352 aa18.67■□□□□ 0.58
CLCNKA-202ENST00000375692 CRBNQ96SW2 442 aa18.67■□□□□ 0.58
CLCNKA-202ENST00000375692 DEPDC5O75140 1603 aa18.66■□□□□ 0.58
CLCNKA-202ENST00000375692 NEFMP07197 916 aa18.66■□□□□ 0.58
CLCNKA-202ENST00000375692 MS4A1P11836 297 aa18.65■□□□□ 0.58
CLCNKA-202ENST00000375692 PANK3Q9H999 370 aa18.65■□□□□ 0.58
CLCNKA-202ENST00000375692 CCDC144AA2RUR9 1427 aa18.65■□□□□ 0.58
CLCNKA-202ENST00000375692 PRAG1Q86YV5 1406 aa18.64■□□□□ 0.57
CLCNKA-202ENST00000375692 WASHC2CQ9Y4E1 1318 aa18.64■□□□□ 0.57
CLCNKA-202ENST00000375692 DISP3Q9P2K9 1392 aa18.63■□□□□ 0.57
CLCNKA-202ENST00000375692 EIF2AK4Q9P2K8 1649 aaKnown RBP18.63■□□□□ 0.57
CLCNKA-202ENST00000375692 VWDEQ8N2E2 1590 aa18.63■□□□□ 0.57
CLCNKA-202ENST00000375692 C20orf194Q5TEA3 1177 aa18.62■□□□□ 0.57
CLCNKA-202ENST00000375692 PRDM15P57071 1507 aaPredicted RBP18.62■□□□□ 0.57
CLCNKA-202ENST00000375692 TESK2Q96S53 571 aa18.61■□□□□ 0.57
CLCNKA-202ENST00000375692 MLECQ14165 292 aa18.6■□□□□ 0.57
CLCNKA-202ENST00000375692 IL27Q8NEV9 243 aa18.6■□□□□ 0.57
CLCNKA-202ENST00000375692 ZMYM4Q5VZL5 1548 aa18.6■□□□□ 0.57
CLCNKA-202ENST00000375692 ATP10AO60312 1499 aa18.6■□□□□ 0.57
CLCNKA-202ENST00000375692 TRPM1Q7Z4N2 1603 aa18.59■□□□□ 0.57
CLCNKA-202ENST00000375692 ADAMTS8Q9UP79 889 aa18.57■□□□□ 0.56
CLCNKA-202ENST00000375692 BLMP54132 1417 aaPredicted RBP18.56■□□□□ 0.56
CLCNKA-202ENST00000375692 RNF17Q9BXT8 1623 aaKnown RBP18.56■□□□□ 0.56
CLCNKA-202ENST00000375692 CFAP65Q6ZU64 1925 aaKnown RBP18.56■□□□□ 0.56
CLCNKA-202ENST00000375692 CEP152O94986 1710 aa18.56■□□□□ 0.56
CLCNKA-202ENST00000375692 TET3O43151 1660 aa18.56■□□□□ 0.56
CLCNKA-202ENST00000375692 PTPRTO14522 1441 aa18.55■□□□□ 0.56
CLCNKA-202ENST00000375692 SLC4A3P48751 1232 aa18.55■□□□□ 0.56
CLCNKA-202ENST00000375692 UGGT1Q9NYU2 1555 aa18.55■□□□□ 0.56
CLCNKA-202ENST00000375692 NPATQ14207 1427 aa18.55■□□□□ 0.56
CLCNKA-202ENST00000375692 RTN4Q9NQC3 1192 aaKnown RBP18.54■□□□□ 0.56
CLCNKA-202ENST00000375692 GPRASP1Q5JY77 1395 aa18.54■□□□□ 0.56
CLCNKA-202ENST00000375692 SIGLEC1Q9BZZ2 1709 aa18.53■□□□□ 0.56
CLCNKA-202ENST00000375692 USP35Q9P2H5 1018 aa18.53■□□□□ 0.56
CLCNKA-202ENST00000375692 PPM1GO15355 546 aaPredicted RBP18.52■□□□□ 0.56
CLCNKA-202ENST00000375692 TMF1P82094 1093 aa18.52■□□□□ 0.56
CLCNKA-202ENST00000375692 ABCC3O15438 1527 aa18.52■□□□□ 0.56
CLCNKA-202ENST00000375692 EFCAB6Q5THR3 1501 aa18.52■□□□□ 0.56
CLCNKA-202ENST00000375692 LMTK2Q8IWU2 1503 aa18.5■□□□□ 0.55
CLCNKA-202ENST00000375692 FBXO31Q5XUX0 539 aaPredicted RBP18.5■□□□□ 0.55
CLCNKA-202ENST00000375692 TRPM2O94759 1503 aa18.49■□□□□ 0.55
CLCNKA-202ENST00000375692 KDM2BQ8NHM5 1336 aa18.49■□□□□ 0.55
CLCNKA-202ENST00000375692 CHGAP10645 457 aaKnown RBP18.49■□□□□ 0.55
CLCNKA-202ENST00000375692 CLTCL1P53675 1640 aa18.48■□□□□ 0.55
CLCNKA-202ENST00000375692 PLEKHH1Q9ULM0 1364 aa18.48■□□□□ 0.55
CLCNKA-202ENST00000375692 DDRGK1Q96HY6 314 aa18.48■□□□□ 0.55
CLCNKA-202ENST00000375692 SPHKAPQ2M3C7 1700 aa18.48■□□□□ 0.55
CLCNKA-202ENST00000375692 ANO8Q9HCE9 1232 aaPredicted RBP18.48■□□□□ 0.55
CLCNKA-202ENST00000375692 DUSP27Q5VZP5 1158 aa18.47■□□□□ 0.55
CLCNKA-202ENST00000375692 INSRP06213 1382 aa18.47■□□□□ 0.55
CLCNKA-202ENST00000375692 PPP2R1AP30153 589 aa18.46■□□□□ 0.55
CLCNKA-202ENST00000375692 WDR43Q15061 677 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLCNKA-202ENST00000375692 KNSTRNQ9Y448 316 aa18.44■□□□□ 0.54
CLCNKA-202ENST00000375692 ARHGEF40Q8TER5 1519 aa18.44■□□□□ 0.54
CLCNKA-202ENST00000375692 CENPQQ7L2Z9 268 aaPredicted RBP18.44■□□□□ 0.54
CLCNKA-202ENST00000375692 NFKBIBQ15653 356 aa18.43■□□□□ 0.54
CLCNKA-202ENST00000375692 CAMSAP1Q5T5Y3 1602 aa18.43■□□□□ 0.54
CLCNKA-202ENST00000375692 GOLGA2Q08379 1002 aa18.42■□□□□ 0.54
CLCNKA-202ENST00000375692 IDI1Q13907 227 aa18.42■□□□□ 0.54
CLCNKA-202ENST00000375692 AGLP35573 1532 aa18.42■□□□□ 0.54
CLCNKA-202ENST00000375692 RGS3P49796 1198 aa18.41■□□□□ 0.54
CLCNKA-202ENST00000375692 C8orf34Q49A92 452 aa18.41■□□□□ 0.54
CLCNKA-202ENST00000375692 CCDC146Q8IYE0 955 aa18.41■□□□□ 0.54
CLCNKA-202ENST00000375692 AMER1Q5JTC6 1135 aaPredicted RBP18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 NUTM2DQ5VT03 806 aaPredicted RBP18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 REREQ9P2R6 1566 aa18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 ZNF521Q96K83 1311 aa18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 SENP3Q9H4L4 574 aaPredicted RBP18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 DAXXQ9UER7 740 aaPredicted RBP18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 LAMC1P11047 1609 aa18.4■□□□□ 0.54
CLCNKA-202ENST00000375692 FAM161AQ3B820 660 aa18.39■□□□□ 0.54
CLCNKA-202ENST00000375692 NOS1P29475 1434 aa18.39■□□□□ 0.54
CLCNKA-202ENST00000375692 SPINK5Q9NQ38 1064 aaPredicted RBP18.38■□□□□ 0.53
CLCNKA-202ENST00000375692 GSE1Q14687 1217 aa18.38■□□□□ 0.53
CLCNKA-202ENST00000375692 ADGRF5Q8IZF2 1346 aa18.38■□□□□ 0.53
CLCNKA-202ENST00000375692 ARHGAP31Q2M1Z3 1444 aa18.38■□□□□ 0.53
CLCNKA-202ENST00000375692 BRPF3Q9ULD4 1205 aa18.37■□□□□ 0.53
CLCNKA-202ENST00000375692 SLFN5Q08AF3 891 aa18.37■□□□□ 0.53
CLCNKA-202ENST00000375692 ESF1Q9H501 851 aaKnown RBP18.36■□□□□ 0.53
CLCNKA-202ENST00000375692 SYNMO15061 1565 aa18.36■□□□□ 0.53
CLCNKA-202ENST00000375692 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.36■□□□□ 0.53
CLCNKA-202ENST00000375692 BCAR3O75815 825 aa18.35■□□□□ 0.53
CLCNKA-202ENST00000375692 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
CLCNKA-202ENST00000375692 PPP6R1Q9UPN7 881 aa18.35■□□□□ 0.53
CLCNKA-202ENST00000375692 CLTCQ00610 1675 aaKnown RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms