RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 KIAA1211Q6ZU35 1233 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 BCL2L13Q9BXK5 485 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 PODXL2Q9NZ53 605 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 PCDHB15Q9Y5E8 787 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 TSPY4P0CV99 314 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 TSPY10P0CW01 314 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 TNNQ9UQP3 1299 aa19.45■□□□□ 0.7
LMNA-201ENST00000347559 RBM10P98175 930 aaKnown RBP19.44■□□□□ 0.7
LMNA-201ENST00000347559 C22orf23Q9BZE7 217 aa19.44■□□□□ 0.7
LMNA-201ENST00000347559 IQGAP2Q13576 1575 aa19.44■□□□□ 0.7
LMNA-201ENST00000347559 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.44■□□□□ 0.72e-8■■■□□ 16.1
LMNA-201ENST00000347559 URB2Q14146 1524 aaKnown RBP19.43■□□□□ 0.7
LMNA-201ENST00000347559 TPM2P07951 284 aa19.43■□□□□ 0.7
LMNA-201ENST00000347559 DDX11L8A8MPP1 907 aa19.43■□□□□ 0.7
LMNA-201ENST00000347559 GAS2L3Q86XJ1 694 aa19.43■□□□□ 0.7
LMNA-201ENST00000347559 PMFBP1Q8TBY8 1022 aa19.43■□□□□ 0.7
LMNA-201ENST00000347559 PDCL3Q9H2J4 239 aa19.43■□□□□ 0.7
LMNA-201ENST00000347559 VIRMAQ69YN4 1812 aaKnown RBP19.42■□□□□ 0.7
LMNA-201ENST00000347559 HSCBQ8IWL3 235 aa19.42■□□□□ 0.7
LMNA-201ENST00000347559 CCDC144AA2RUR9 1427 aa19.41■□□□□ 0.7
LMNA-201ENST00000347559 NUP153P49790 1475 aaKnown RBP19.4■□□□□ 0.7
LMNA-201ENST00000347559 AMER1Q5JTC6 1135 aaPredicted RBP19.4■□□□□ 0.7
LMNA-201ENST00000347559 ARID3AQ99856 593 aa19.4■□□□□ 0.7
LMNA-201ENST00000347559 ADGRL2O95490 1459 aa19.39■□□□□ 0.7
LMNA-201ENST00000347559 GPATCH8Q9UKJ3 1502 aaKnown RBP19.39■□□□□ 0.69
LMNA-201ENST00000347559 ADGBQ8N7X0 1667 aa19.39■□□□□ 0.69
LMNA-201ENST00000347559 RLBP1P12271 317 aa19.39■□□□□ 0.69
LMNA-201ENST00000347559 PLEKHG5O94827 1062 aa19.38■□□□□ 0.69
LMNA-201ENST00000347559 FOXD4L1Q9NU39 408 aa19.38■□□□□ 0.69
LMNA-201ENST00000347559 HNRNPMP52272 730 aaKnown RBP eCLIP19.37■□□□□ 0.69
LMNA-201ENST00000347559 RRP7AQ9Y3A4 280 aaKnown RBP19.37■□□□□ 0.69
LMNA-201ENST00000347559 MAGI2Q86UL8 1455 aa19.37■□□□□ 0.69
LMNA-201ENST00000347559 PDS5BQ9NTI5 1447 aa19.36■□□□□ 0.69
LMNA-201ENST00000347559 RWDD1Q9H446 243 aaPredicted RBP19.36■□□□□ 0.69
LMNA-201ENST00000347559 TROQ12816 1431 aaPredicted RBP19.36■□□□□ 0.69
LMNA-201ENST00000347559 C9orf84Q5VXU9 1444 aa19.36■□□□□ 0.69
LMNA-201ENST00000347559 KDM5DQ9BY66 1539 aa19.36■□□□□ 0.69
LMNA-201ENST00000347559 CEP170Q5SW79 1584 aa19.35■□□□□ 0.69
LMNA-201ENST00000347559 FAM13BQ9NYF5 915 aa19.35■□□□□ 0.69
LMNA-201ENST00000347559 TRPM1Q7Z4N2 1603 aa19.35■□□□□ 0.69
LMNA-201ENST00000347559 TNPO1Q92973 898 aaKnown RBP19.34■□□□□ 0.69
LMNA-201ENST00000347559 ISY1Q9ULR0 285 aaKnown RBP19.33■□□□□ 0.69
LMNA-201ENST00000347559 GPRASP1Q5JY77 1395 aa19.33■□□□□ 0.68
LMNA-201ENST00000347559 MSNP26038 577 aaKnown RBP19.32■□□□□ 0.68
LMNA-201ENST00000347559 HSP90AB1P08238 724 aaKnown RBP19.31■□□□□ 0.68
LMNA-201ENST00000347559 WWC1Q8IX03 1113 aa19.31■□□□□ 0.68
LMNA-201ENST00000347559 ANP32BQ92688 251 aaKnown RBP19.31■□□□□ 0.68
LMNA-201ENST00000347559 RARSP54136 660 aaKnown RBP19.31■□□□□ 0.68
LMNA-201ENST00000347559 GBP4Q96PP9 640 aa19.3■□□□□ 0.68
LMNA-201ENST00000347559 ZNF692Q9BU19 519 aaPredicted RBP19.3■□□□□ 0.68
LMNA-201ENST00000347559 A2MP01023 1474 aa19.3■□□□□ 0.68
LMNA-201ENST00000347559 A0A0U1RQG5 324 aaPredicted RBP19.29■□□□□ 0.68
LMNA-201ENST00000347559 R3HCC1Q9Y3T6 440 aaKnown RBP19.29■□□□□ 0.68
LMNA-201ENST00000347559 NASPP49321 788 aaPredicted RBP19.29■□□□□ 0.68
LMNA-201ENST00000347559 NINLQ9Y2I6 1382 aa19.28■□□□□ 0.68
LMNA-201ENST00000347559 ZSCAN30Q86W11 494 aa19.28■□□□□ 0.68
LMNA-201ENST00000347559 WDR7Q9Y4E6 1490 aa19.28■□□□□ 0.68
LMNA-201ENST00000347559 CALD1Q05682 793 aaKnown RBP19.27■□□□□ 0.68
LMNA-201ENST00000347559 RIPK4P57078 832 aa19.27■□□□□ 0.67
LMNA-201ENST00000347559 CCDC173Q0VFZ6 552 aa19.27■□□□□ 0.67
LMNA-201ENST00000347559 TNNT2P45379 298 aaPredicted RBP19.26■□□□□ 0.67
LMNA-201ENST00000347559 PRDM15P57071 1507 aaPredicted RBP19.26■□□□□ 0.67
LMNA-201ENST00000347559 OFD1O75665 1012 aa19.25■□□□□ 0.67
LMNA-201ENST00000347559 FTSJ3Q8IY81 847 aaKnown RBP19.25■□□□□ 0.67
LMNA-201ENST00000347559 ITSN2Q9NZM3 1697 aa19.25■□□□□ 0.67
LMNA-201ENST00000347559 RAPGEF6Q8TEU7 1601 aa19.25■□□□□ 0.67
LMNA-201ENST00000347559 CLASP1Q7Z460 1538 aa19.25■□□□□ 0.67
LMNA-201ENST00000347559 PIK3C2GO75747 1445 aa19.25■□□□□ 0.67
LMNA-201ENST00000347559 CROCC2H7BZ55 1655 aa19.24■□□□□ 0.67
LMNA-201ENST00000347559 EIF4G3O43432 1585 aaKnown RBP19.24■□□□□ 0.67
LMNA-201ENST00000347559 SKOR2Q2VWA4 1001 aaPredicted RBP19.24■□□□□ 0.67
LMNA-201ENST00000347559 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.24■□□□□ 0.67
LMNA-201ENST00000347559 PRDM4Q9UKN5 801 aa19.24■□□□□ 0.67
LMNA-201ENST00000347559 RTEL1-TNFRSF6BF6WH68 1400 aa19.23■□□□□ 0.67
LMNA-201ENST00000347559 PLEKHD1A6NEE1 506 aa19.23■□□□□ 0.67
LMNA-201ENST00000347559 NCLP19338 710 aaKnown RBP19.23■□□□□ 0.67
LMNA-201ENST00000347559 CDCA8Q53HL2 280 aa19.23■□□□□ 0.67
LMNA-201ENST00000347559 FAM135AQ9P2D6 1515 aa19.23■□□□□ 0.67
LMNA-201ENST00000347559 DDX49Q9Y6V7 483 aaKnown RBP19.22■□□□□ 0.67
LMNA-201ENST00000347559 PLB1Q6P1J6 1458 aa19.22■□□□□ 0.67
LMNA-201ENST00000347559 PTPRGP23470 1445 aa19.21■□□□□ 0.67
LMNA-201ENST00000347559 ASXL1Q8IXJ9 1541 aa19.21■□□□□ 0.67
LMNA-201ENST00000347559 DISP1Q96F81 1524 aa19.21■□□□□ 0.67
LMNA-201ENST00000347559 XPCQ01831 940 aaPredicted RBP19.2■□□□□ 0.66
LMNA-201ENST00000347559 RAB3GAP1Q15042 981 aa19.2■□□□□ 0.66
LMNA-201ENST00000347559 MVPQ14764 893 aaKnown RBP19.2■□□□□ 0.66
LMNA-201ENST00000347559 SSFA2P28290 1259 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 AAMPQ13685 434 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 PPP1R9BQ96SB3 815 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 PLA2R1Q13018 1463 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 DDIT3P35638 169 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 TCP11L2Q8N4U5 519 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 PRDM10Q9NQV6 1147 aa19.19■□□□□ 0.66
LMNA-201ENST00000347559 GOLGA6L22H0YM25 854 aa19.18■□□□□ 0.66
LMNA-201ENST00000347559 ZMYM3Q14202 1370 aa19.18■□□□□ 0.66
LMNA-201ENST00000347559 ABCC2Q92887 1545 aa19.18■□□□□ 0.66
LMNA-201ENST00000347559 SMC5Q8IY18 1101 aa19.18■□□□□ 0.66
LMNA-201ENST00000347559 KIAA0556O60303 1618 aa19.18■□□□□ 0.66
LMNA-201ENST00000347559 UQCRHLA0A096LP55 91 aa19.18■□□□□ 0.66
LMNA-201ENST00000347559 UQCRHP07919 91 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms