RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 MLH3Q9UHC1 1453 aa17.59■□□□□ 0.41
COL18A1-201ENST00000342220 CNTLNQ9NXG0 1405 aa17.58■□□□□ 0.4
COL18A1-201ENST00000342220 PRDM15P57071 1507 aaPredicted RBP17.58■□□□□ 0.4
COL18A1-201ENST00000342220 CABP2Q9NPB3 220 aa17.57■□□□□ 0.4
COL18A1-201ENST00000342220 SLC26A8Q96RN1 970 aa17.57■□□□□ 0.4
COL18A1-201ENST00000342220 MSH5O43196 834 aa17.57■□□□□ 0.4
COL18A1-201ENST00000342220 CCDC136Q96JN2 1154 aa17.57■□□□□ 0.4
COL18A1-201ENST00000342220 PPRC1Q5VV67 1664 aaKnown RBP17.56■□□□□ 0.4
COL18A1-201ENST00000342220 HECW2Q9P2P5 1572 aa17.56■□□□□ 0.4
COL18A1-201ENST00000342220 MROH1Q8NDA8 1641 aa17.56■□□□□ 0.4
COL18A1-201ENST00000342220 RNF17Q9BXT8 1623 aaKnown RBP17.56■□□□□ 0.4
COL18A1-201ENST00000342220 RICTORQ6R327 1708 aa17.55■□□□□ 0.4
COL18A1-201ENST00000342220 TESK2Q96S53 571 aa17.55■□□□□ 0.4
COL18A1-201ENST00000342220 SLC12A5Q9H2X9 1139 aa17.55■□□□□ 0.4
COL18A1-201ENST00000342220 SLC52A1Q9NWF4 448 aa17.55■□□□□ 0.4
COL18A1-201ENST00000342220 RBM33Q96EV2 1170 aaKnown RBP17.54■□□□□ 0.4
COL18A1-201ENST00000342220 WAPLQ7Z5K2 1190 aa17.54■□□□□ 0.4
COL18A1-201ENST00000342220 DIP2BQ9P265 1576 aa17.54■□□□□ 0.4
COL18A1-201ENST00000342220 CENPJQ9HC77 1338 aaPredicted RBP17.53■□□□□ 0.4
COL18A1-201ENST00000342220 SPATA31E1Q6ZUB1 1445 aa17.53■□□□□ 0.4
COL18A1-201ENST00000342220 DEKP35659 375 aaKnown RBP17.53■□□□□ 0.4
COL18A1-201ENST00000342220 PRAM1Q96QH2 718 aa17.53■□□□□ 0.4
COL18A1-201ENST00000342220 RALGAPBQ86X10 1494 aa17.52■□□□□ 0.4
COL18A1-201ENST00000342220 TXNDC2Q86VQ3 553 aa17.52■□□□□ 0.4
COL18A1-201ENST00000342220 POLR1AO95602 1720 aaPredicted RBP17.52■□□□□ 0.4
COL18A1-201ENST00000342220 ABCA6Q8N139 1617 aa17.51■□□□□ 0.39
COL18A1-201ENST00000342220 PPM1GO15355 546 aaPredicted RBP17.51■□□□□ 0.39
COL18A1-201ENST00000342220 SOX12O15370 315 aa17.51■□□□□ 0.39
COL18A1-201ENST00000342220 NEURL4Q96JN8 1562 aa17.51■□□□□ 0.39
COL18A1-201ENST00000342220 E9PCH4 1651 aa17.5■□□□□ 0.39
COL18A1-201ENST00000342220 TET3O43151 1660 aa17.5■□□□□ 0.39
COL18A1-201ENST00000342220 ZMYM3Q14202 1370 aa17.49■□□□□ 0.39
COL18A1-201ENST00000342220 CDCA8Q53HL2 280 aa17.48■□□□□ 0.39
COL18A1-201ENST00000342220 FRMPD1Q5SYB0 1578 aa17.48■□□□□ 0.39
COL18A1-201ENST00000342220 DNAJC5Q9H3Z4 198 aa17.48■□□□□ 0.39
COL18A1-201ENST00000342220 UHRF1BP1Q6BDS2 1440 aa17.48■□□□□ 0.39
COL18A1-201ENST00000342220 CEP152O94986 1710 aa17.47■□□□□ 0.39
COL18A1-201ENST00000342220 CLTCL1P53675 1640 aa17.46■□□□□ 0.39
COL18A1-201ENST00000342220 KIF13AQ9H1H9 1805 aa17.46■□□□□ 0.39
COL18A1-201ENST00000342220 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.46■□□□□ 0.39
COL18A1-201ENST00000342220 ZMYM4Q5VZL5 1548 aa17.46■□□□□ 0.39
COL18A1-201ENST00000342220 LMTK2Q8IWU2 1503 aa17.46■□□□□ 0.39
COL18A1-201ENST00000342220 C14orf93Q9H972 538 aaKnown RBP17.46■□□□□ 0.39
COL18A1-201ENST00000342220 DIP2CQ9Y2E4 1556 aa17.46■□□□□ 0.39
COL18A1-201ENST00000342220 PTPRTO14522 1441 aa17.45■□□□□ 0.38
COL18A1-201ENST00000342220 NEUROD2Q15784 382 aa17.45■□□□□ 0.38
COL18A1-201ENST00000342220 EIF3AQ14152 1382 aaKnown RBP17.45■□□□□ 0.38
COL18A1-201ENST00000342220 KTN1Q86UP2 1357 aaKnown RBP17.45■□□□□ 0.38
COL18A1-201ENST00000342220 ABCC3O15438 1527 aa17.44■□□□□ 0.38
COL18A1-201ENST00000342220 SPHKAPQ2M3C7 1700 aa17.44■□□□□ 0.38
COL18A1-201ENST00000342220 TRPM2O94759 1503 aa17.42■□□□□ 0.38
COL18A1-201ENST00000342220 EFCAB6Q5THR3 1501 aa17.42■□□□□ 0.38
COL18A1-201ENST00000342220 C14orf37Q86TY3 774 aa17.42■□□□□ 0.38
COL18A1-201ENST00000342220 CCDC146Q8IYE0 955 aa17.42■□□□□ 0.38
COL18A1-201ENST00000342220 LAMC1P11047 1609 aa17.41■□□□□ 0.38
COL18A1-201ENST00000342220 WDR43Q15061 677 aaKnown RBP eCLIP17.41■□□□□ 0.389e-7■■■□□ 16.4
COL18A1-201ENST00000342220 REREQ9P2R6 1566 aa17.4■□□□□ 0.38
COL18A1-201ENST00000342220 EID1Q9Y6B2 187 aa17.4■□□□□ 0.38
COL18A1-201ENST00000342220 NCKAP5LQ9HCH0 1330 aa17.4■□□□□ 0.38
COL18A1-201ENST00000342220 MORC1Q86VD1 984 aa17.4■□□□□ 0.38
COL18A1-201ENST00000342220 FBLN1P23142 703 aa17.39■□□□□ 0.37
COL18A1-201ENST00000342220 GGNBP2Q9H3C7 697 aa17.39■□□□□ 0.37
COL18A1-201ENST00000342220 SCAF11Q99590 1463 aaKnown RBP17.38■□□□□ 0.37
COL18A1-201ENST00000342220 ZC3H13Q5T200 1668 aaKnown RBP17.38■□□□□ 0.37
COL18A1-201ENST00000342220 ZBED9Q6R2W3 1325 aa17.37■□□□□ 0.37
COL18A1-201ENST00000342220 STAC3Q96MF2 364 aa17.37■□□□□ 0.37
COL18A1-201ENST00000342220 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.37■□□□□ 0.37
COL18A1-201ENST00000342220 RPGRIP1LQ68CZ1 1315 aa17.37■□□□□ 0.37
COL18A1-201ENST00000342220 EVC2Q86UK5 1308 aa17.37■□□□□ 0.37
COL18A1-201ENST00000342220 MYBBP1AQ9BQG0 1328 aaKnown RBP17.37■□□□□ 0.37
COL18A1-201ENST00000342220 HDGFP51858 240 aaKnown RBP17.36■□□□□ 0.37
COL18A1-201ENST00000342220 RALBP1Q15311 655 aa17.36■□□□□ 0.37
COL18A1-201ENST00000342220 NLRP13Q86W25 1043 aa17.36■□□□□ 0.37
COL18A1-201ENST00000342220 CABP1Q9NZU7 370 aa17.36■□□□□ 0.37
COL18A1-201ENST00000342220 TNRQ92752 1358 aa17.36■□□□□ 0.37
COL18A1-201ENST00000342220 LTKP29376 864 aa17.36■□□□□ 0.37
COL18A1-201ENST00000342220 UBE2Q2Q8WVN8 375 aa17.36■□□□□ 0.37
COL18A1-201ENST00000342220 IFT172Q9UG01 1749 aa17.35■□□□□ 0.37
COL18A1-201ENST00000342220 PPP4R2Q9NY27 417 aa17.35■□□□□ 0.37
COL18A1-201ENST00000342220 TRPM1Q7Z4N2 1603 aa17.35■□□□□ 0.37
COL18A1-201ENST00000342220 CDK19Q9BWU1 502 aa17.35■□□□□ 0.37
COL18A1-201ENST00000342220 PER1O15534 1290 aaPredicted RBP17.34■□□□□ 0.37
COL18A1-201ENST00000342220 ZBTB7CA1YPR0 619 aa17.34■□□□□ 0.37
COL18A1-201ENST00000342220 CARD14Q9BXL6 1004 aa17.34■□□□□ 0.37
COL18A1-201ENST00000342220 ERICH6BQ5W0A0 696 aa17.33■□□□□ 0.36
COL18A1-201ENST00000342220 GPRASP1Q5JY77 1395 aa17.33■□□□□ 0.36
COL18A1-201ENST00000342220 U2SURPO15042 1029 aaKnown RBP17.32■□□□□ 0.36
COL18A1-201ENST00000342220 B4GALNT3Q6L9W6 998 aa17.31■□□□□ 0.36
COL18A1-201ENST00000342220 PMFBP1Q8TBY8 1022 aa17.31■□□□□ 0.36
COL18A1-201ENST00000342220 RIMS2Q9UQ26 1411 aa17.31■□□□□ 0.36
COL18A1-201ENST00000342220 PNISRQ8TF01 805 aaKnown RBP17.31■□□□□ 0.36
COL18A1-201ENST00000342220 RRP7AQ9Y3A4 280 aaKnown RBP17.31■□□□□ 0.36
COL18A1-201ENST00000342220 RTN4Q9NQC3 1192 aaKnown RBP17.3■□□□□ 0.36
COL18A1-201ENST00000342220 ADAMTS8Q9UP79 889 aa17.3■□□□□ 0.36
COL18A1-201ENST00000342220 PPP2R1AP30153 589 aa17.29■□□□□ 0.36
COL18A1-201ENST00000342220 LMOD2Q6P5Q4 547 aa17.29■□□□□ 0.36
COL18A1-201ENST00000342220 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL18A1-201ENST00000342220 PLEKHH1Q9ULM0 1364 aa17.28■□□□□ 0.36
COL18A1-201ENST00000342220 NUTM2GQ5VZR2 741 aa17.28■□□□□ 0.36
COL18A1-201ENST00000342220 KIAA1210Q9ULL0 1709 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms