RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 RABEP1Q15276 862 aa7.47□□□□□ -1.21
CSMD1-201ENST00000335551 FBXO3Q9UK99 471 aa7.47□□□□□ -1.21
CSMD1-201ENST00000335551 ROCK1Q13464 1354 aa7.47□□□□□ -1.21
CSMD1-201ENST00000335551 WRNQ14191 1432 aaPredicted RBP eCLIP7.47□□□□□ -1.21
CSMD1-201ENST00000335551 ZBED9Q6R2W3 1325 aa7.47□□□□□ -1.21
CSMD1-201ENST00000335551 OLFM4Q6UX06 510 aa7.46□□□□□ -1.21
CSMD1-201ENST00000335551 ERLIN1O75477 346 aa7.46□□□□□ -1.21
CSMD1-201ENST00000335551 MBD3O95983 291 aa7.46□□□□□ -1.21
CSMD1-201ENST00000335551 EPS15P42566 896 aa7.46□□□□□ -1.21
CSMD1-201ENST00000335551 CFDP1Q9UEE9 299 aaPredicted RBP7.46□□□□□ -1.21
CSMD1-201ENST00000335551 TXLNBQ8N3L3 684 aa7.46□□□□□ -1.22
CSMD1-201ENST00000335551 SYNE3Q6ZMZ3 975 aa7.46□□□□□ -1.22
CSMD1-201ENST00000335551 CLASRPQ8N2M8 674 aaKnown RBP7.46□□□□□ -1.22
CSMD1-201ENST00000335551 DDX11Q96FC9 970 aa7.46□□□□□ -1.22
CSMD1-201ENST00000335551 KIF15Q9NS87 1388 aa7.46□□□□□ -1.22
CSMD1-201ENST00000335551 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.45□□□□□ -1.22
CSMD1-201ENST00000335551 RNF20Q5VTR2 975 aa7.45□□□□□ -1.22
CSMD1-201ENST00000335551 FAM107BQ9H098 131 aa7.45□□□□□ -1.22
CSMD1-201ENST00000335551 U2AF1L5P0DN76 240 aaPredicted RBP7.45□□□□□ -1.22
CSMD1-201ENST00000335551 U2AF1Q01081 240 aaKnown RBP eCLIP7.45□□□□□ -1.22
CSMD1-201ENST00000335551 TRHP20396 242 aaPredicted RBP7.45□□□□□ -1.22
CSMD1-201ENST00000335551 HSP90AB2PQ58FF8 381 aa7.45□□□□□ -1.22
CSMD1-201ENST00000335551 CHMP3Q9Y3E7 222 aa7.45□□□□□ -1.22
CSMD1-201ENST00000335551 HDGFL2Q7Z4V5 671 aaPredicted RBP7.45□□□□□ -1.22
CSMD1-201ENST00000335551 SMARCE1Q969G3 411 aa7.45□□□□□ -1.22
CSMD1-201ENST00000335551 NLRP13Q86W25 1043 aa7.44□□□□□ -1.22
CSMD1-201ENST00000335551 PDCL2Q8N4E4 241 aa7.44□□□□□ -1.22
CSMD1-201ENST00000335551 CPLX1O14810 134 aa7.44□□□□□ -1.22
CSMD1-201ENST00000335551 SRPK2P78362 688 aaKnown RBP7.44□□□□□ -1.22
CSMD1-201ENST00000335551 ENOX2Q16206 610 aaKnown RBP7.44□□□□□ -1.22
CSMD1-201ENST00000335551 LMOD2Q6P5Q4 547 aa7.44□□□□□ -1.22
CSMD1-201ENST00000335551 TOMM22Q9NS69 142 aa7.44□□□□□ -1.22
CSMD1-201ENST00000335551 AAMPQ13685 434 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 SLC26A8Q96RN1 970 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 CCDC112Q8NEF3 446 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 OFD1O75665 1012 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 DCAF11Q8TEB1 546 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 SEPT7Q16181 437 aaKnown RBP7.43□□□□□ -1.22
CSMD1-201ENST00000335551 TSPY26PQ9H489 355 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 LUC7LQ9NQ29 371 aaKnown RBP7.43□□□□□ -1.22
CSMD1-201ENST00000335551 CALCOCO1Q9P1Z2 691 aa7.43□□□□□ -1.22
CSMD1-201ENST00000335551 SPATA24Q86W54 205 aa7.42□□□□□ -1.22
CSMD1-201ENST00000335551 UQCRHLA0A096LP55 91 aa7.42□□□□□ -1.22
CSMD1-201ENST00000335551 UQCRHP07919 91 aa7.42□□□□□ -1.22
CSMD1-201ENST00000335551 TRIM5Q9C035 493 aa7.42□□□□□ -1.22
CSMD1-201ENST00000335551 SIN3AQ96ST3 1273 aa7.42□□□□□ -1.22
CSMD1-201ENST00000335551 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 HSPA5P11021 654 aaKnown RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 GON4LQ3T8J9 2241 aa7.42□□□□□ -1.22
CSMD1-201ENST00000335551 FOXD4L6Q3SYB3 417 aaPredicted RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 FOXD4L3Q6VB84 417 aaPredicted RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 PIP4K2AP48426 406 aaPredicted RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 SENP3Q9H4L4 574 aaPredicted RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 SAFBQ15424 915 aaKnown RBP eCLIP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 ANO8Q9HCE9 1232 aaPredicted RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 RRP1P56182 461 aaKnown RBP7.42□□□□□ -1.22
CSMD1-201ENST00000335551 NFKBIBQ15653 356 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 EIF4G1Q04637 1599 aaKnown RBP7.41□□□□□ -1.22
CSMD1-201ENST00000335551 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.41□□□□□ -1.22
CSMD1-201ENST00000335551 LRRCC1Q9C099 1032 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 ANO2Q9NQ90 1003 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 GBP2P32456 591 aaPredicted RBP7.41□□□□□ -1.22
CSMD1-201ENST00000335551 PDILTQ8N807 584 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 RILPL2Q969X0 211 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 SMC3Q9UQE7 1217 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 SMARCA2P51531 1590 aa7.41□□□□□ -1.22
CSMD1-201ENST00000335551 AMOTL1Q8IY63 956 aa7.4□□□□□ -1.22
CSMD1-201ENST00000335551 CCDC43Q96MW1 224 aaKnown RBP7.4□□□□□ -1.22
CSMD1-201ENST00000335551 KINO60870 393 aaKnown RBP7.4□□□□□ -1.22
CSMD1-201ENST00000335551 KIF2AO00139 706 aaPredicted RBP7.4□□□□□ -1.22
CSMD1-201ENST00000335551 RBM33Q96EV2 1170 aaKnown RBP7.4□□□□□ -1.22
CSMD1-201ENST00000335551 SMC2O95347 1197 aa7.4□□□□□ -1.22
CSMD1-201ENST00000335551 BRPF3Q9ULD4 1205 aa7.4□□□□□ -1.22
CSMD1-201ENST00000335551 ZKSCAN2Q63HK3 967 aa7.4□□□□□ -1.22
CSMD1-201ENST00000335551 INTS3Q68E01 1043 aaKnown RBP7.4□□□□□ -1.23
CSMD1-201ENST00000335551 VPS37CA5D8V6 355 aaPredicted RBP7.4□□□□□ -1.23
CSMD1-201ENST00000335551 PDCP20941 246 aa7.4□□□□□ -1.23
CSMD1-201ENST00000335551 GOLGA6L10A0A0M3HER8 536 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 NINLQ9Y2I6 1382 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 CCDC146Q8IYE0 955 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 ZNHIT6Q9NWK9 470 aaKnown RBP7.39□□□□□ -1.23
CSMD1-201ENST00000335551 ANKRD45Q5TZF3 282 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 MYBBP1AQ9BQG0 1328 aaKnown RBP7.39□□□□□ -1.23
CSMD1-201ENST00000335551 SHTN1A0MZ66 631 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 ERICH4A6NGS2 130 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 SLC4A3P48751 1232 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 BRMS1Q9HCU9 246 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 E9PSI1 815 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 CENPHQ9H3R5 247 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 DDX19BQ9UMR2 479 aa7.39□□□□□ -1.23
CSMD1-201ENST00000335551 LUZP1Q86V48 1076 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 TRDNQ13061 729 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 CARMIL2Q6F5E8 1435 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 SLC4A10Q6U841 1118 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 C22orf23Q9BZE7 217 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 RBM10P98175 930 aaKnown RBP7.38□□□□□ -1.23
CSMD1-201ENST00000335551 CCAR1Q8IX12 1150 aaKnown RBP7.38□□□□□ -1.23
CSMD1-201ENST00000335551 MAP9Q49MG5 647 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 RSPH4AQ5TD94 716 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 MICALCLQ6ZW33 695 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms