RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SRPK2P78362 688 aaKnown RBP13.56□□□□□ -0.24
COL3A1-202ENST00000317840 UPF2Q9HAU5 1272 aaKnown RBP13.56□□□□□ -0.24
COL3A1-202ENST00000317840 COG6Q9Y2V7 657 aa13.56□□□□□ -0.24
COL3A1-202ENST00000317840 MORC1Q86VD1 984 aa13.55□□□□□ -0.24
COL3A1-202ENST00000317840 A2MP01023 1474 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 ABCC10Q5T3U5 1492 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 GSE1Q14687 1217 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 BCL2L13Q9BXK5 485 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 ERCC6L2Q5T890 1561 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 CLUAP1Q96AJ1 413 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 PLEKHH1Q9ULM0 1364 aa13.54□□□□□ -0.24
COL3A1-202ENST00000317840 SLKQ9H2G2 1235 aaPredicted RBP13.54□□□□□ -0.24
COL3A1-202ENST00000317840 POLR1AO95602 1720 aaPredicted RBP13.53□□□□□ -0.24
COL3A1-202ENST00000317840 TRAPPC8Q9Y2L5 1435 aa13.53□□□□□ -0.24
COL3A1-202ENST00000317840 E9PSI1 815 aa13.53□□□□□ -0.24
COL3A1-202ENST00000317840 CENPJQ9HC77 1338 aaPredicted RBP13.53□□□□□ -0.24
COL3A1-202ENST00000317840 COL17A1Q9UMD9 1497 aaPredicted RBP13.53□□□□□ -0.24
COL3A1-202ENST00000317840 EIF5BO60841 1220 aaKnown RBP13.53□□□□□ -0.24
COL3A1-202ENST00000317840 SLFN5Q08AF3 891 aa13.53□□□□□ -0.24
COL3A1-202ENST00000317840 AMER1Q5JTC6 1135 aaPredicted RBP13.53□□□□□ -0.24
COL3A1-202ENST00000317840 PANK1Q8TE04 598 aa13.53□□□□□ -0.24
COL3A1-202ENST00000317840 SYCP2Q9BX26 1530 aa13.53□□□□□ -0.24
COL3A1-202ENST00000317840 EIF3AQ14152 1382 aaKnown RBP13.53□□□□□ -0.24
COL3A1-202ENST00000317840 NUTM2FA1L443 756 aa13.52□□□□□ -0.24
COL3A1-202ENST00000317840 SLC24A1O60721 1099 aa13.52□□□□□ -0.25
COL3A1-202ENST00000317840 BECN1Q14457 450 aa13.52□□□□□ -0.25
COL3A1-202ENST00000317840 SOX12O15370 315 aa13.5□□□□□ -0.25
COL3A1-202ENST00000317840 CD109Q6YHK3 1445 aa13.5□□□□□ -0.25
COL3A1-202ENST00000317840 GPRASP1Q5JY77 1395 aa13.5□□□□□ -0.25
COL3A1-202ENST00000317840 BRPF3Q9ULD4 1205 aa13.5□□□□□ -0.25
COL3A1-202ENST00000317840 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.49□□□□□ -0.25
COL3A1-202ENST00000317840 FRAT2O75474 233 aaPredicted RBP13.49□□□□□ -0.25
COL3A1-202ENST00000317840 SPINK5Q9NQ38 1064 aaPredicted RBP13.49□□□□□ -0.25
COL3A1-202ENST00000317840 CFAP53Q96M91 514 aa13.49□□□□□ -0.25
COL3A1-202ENST00000317840 SPRYD3Q8NCJ5 442 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 PLA2R1Q13018 1463 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 ASXL2Q76L83 1435 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 FTSJ3Q8IY81 847 aaKnown RBP13.48□□□□□ -0.25
COL3A1-202ENST00000317840 FANCAO15360 1455 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 PLCH2O75038 1416 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 ADGRL1O94910 1474 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 CGNL1Q0VF96 1302 aa13.48□□□□□ -0.25
COL3A1-202ENST00000317840 CDC42BPAQ5VT25 1732 aa13.47□□□□□ -0.25
COL3A1-202ENST00000317840 BLMP54132 1417 aaPredicted RBP13.47□□□□□ -0.25
COL3A1-202ENST00000317840 KDM5DQ9BY66 1539 aa13.47□□□□□ -0.25
COL3A1-202ENST00000317840 U2SURPO15042 1029 aaKnown RBP13.46□□□□□ -0.25
COL3A1-202ENST00000317840 U2AF1L5P0DN76 240 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-202ENST00000317840 U2AF1Q01081 240 aaKnown RBP eCLIP13.46□□□□□ -0.25
COL3A1-202ENST00000317840 ANO8Q9HCE9 1232 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-202ENST00000317840 MINK1Q8N4C8 1332 aaPredicted RBP13.46□□□□□ -0.25
COL3A1-202ENST00000317840 C8orf34Q49A92 452 aa13.46□□□□□ -0.26
COL3A1-202ENST00000317840 KDM2BQ8NHM5 1336 aa13.45□□□□□ -0.26
COL3A1-202ENST00000317840 CROCC2H7BZ55 1655 aa13.45□□□□□ -0.26
COL3A1-202ENST00000317840 CHD1O14646 1710 aa13.45□□□□□ -0.26
COL3A1-202ENST00000317840 ABCA8O94911 1581 aa13.45□□□□□ -0.26
COL3A1-202ENST00000317840 C14orf37Q86TY3 774 aa13.44□□□□□ -0.26
COL3A1-202ENST00000317840 IGHDP01880 384 aa13.44□□□□□ -0.26
COL3A1-202ENST00000317840 SLC12A5Q9H2X9 1139 aa13.44□□□□□ -0.26
COL3A1-202ENST00000317840 ADCY10Q96PN6 1610 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 ZBTB7CA1YPR0 619 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 FBXO31Q5XUX0 539 aaPredicted RBP13.43□□□□□ -0.26
COL3A1-202ENST00000317840 TCP11L2Q8N4U5 519 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 STAC3Q96MF2 364 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 DMRT2Q9Y5R5 561 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 MAGI2Q86UL8 1455 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 WWC1Q8IX03 1113 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 ADGRF5Q8IZF2 1346 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 SAMD9LQ8IVG5 1584 aa13.43□□□□□ -0.26
COL3A1-202ENST00000317840 ZMYM4Q5VZL5 1548 aa13.42□□□□□ -0.26
COL3A1-202ENST00000317840 ABCC2Q92887 1545 aa13.42□□□□□ -0.26
COL3A1-202ENST00000317840 MAPK8IP3Q9UPT6 1336 aa13.42□□□□□ -0.26
COL3A1-202ENST00000317840 VGFO15240 615 aaPredicted RBP13.42□□□□□ -0.26
COL3A1-202ENST00000317840 ARHGEF5Q12774 1597 aa13.42□□□□□ -0.26
COL3A1-202ENST00000317840 SCAF11Q99590 1463 aaKnown RBP13.42□□□□□ -0.26
COL3A1-202ENST00000317840 PMFBP1Q8TBY8 1022 aa13.41□□□□□ -0.26
COL3A1-202ENST00000317840 PDE3AQ14432 1141 aa13.41□□□□□ -0.26
COL3A1-202ENST00000317840 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL3A1-202ENST00000317840 NKTRP30414 1462 aaKnown RBP13.41□□□□□ -0.26
COL3A1-202ENST00000317840 MTHFSP49914 203 aa13.41□□□□□ -0.26
COL3A1-202ENST00000317840 CABP2Q9NPB3 220 aa13.41□□□□□ -0.26
COL3A1-202ENST00000317840 RWDD1Q9H446 243 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-202ENST00000317840 RUNDC1Q96C34 613 aa13.4□□□□□ -0.26
COL3A1-202ENST00000317840 CARD14Q9BXL6 1004 aa13.39□□□□□ -0.27
COL3A1-202ENST00000317840 TRPM1Q7Z4N2 1603 aa13.39□□□□□ -0.27
COL3A1-202ENST00000317840 NGEFQ8N5V2 710 aa13.39□□□□□ -0.27
COL3A1-202ENST00000317840 MYH16Q9H6N6 1097 aa13.39□□□□□ -0.27
COL3A1-202ENST00000317840 WDR7Q9Y4E6 1490 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 DUOX2Q9NRD8 1548 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 ASXL1Q8IXJ9 1541 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 INSRP06213 1382 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 SMC4Q9NTJ3 1288 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 ZNF521Q96K83 1311 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 MFAP1P55081 439 aaKnown RBP13.38□□□□□ -0.27
COL3A1-202ENST00000317840 ITPRIPQ8IWB1 547 aa13.38□□□□□ -0.27
COL3A1-202ENST00000317840 GZF1Q9H116 711 aaPredicted RBP13.38□□□□□ -0.27
COL3A1-202ENST00000317840 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.37□□□□□ -0.27
COL3A1-202ENST00000317840 EIF2AK4Q9P2K8 1649 aaKnown RBP13.37□□□□□ -0.27
COL3A1-202ENST00000317840 PRDM15P57071 1507 aaPredicted RBP13.37□□□□□ -0.27
COL3A1-202ENST00000317840 IDI1Q13907 227 aa13.37□□□□□ -0.27
COL3A1-202ENST00000317840 SEC24BO95487 1268 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms