RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 LMTK2Q8IWU2 1503 aa19.37■□□□□ 0.69
PTPN9-201ENST00000306726 NUP155O75694 1391 aa19.36■□□□□ 0.69
PTPN9-201ENST00000306726 VWDEQ8N2E2 1590 aa19.36■□□□□ 0.69
PTPN9-201ENST00000306726 CCDC7Q96M83 1385 aa19.35■□□□□ 0.69
PTPN9-201ENST00000306726 KIF3BO15066 747 aa19.34■□□□□ 0.69
PTPN9-201ENST00000306726 NEUROD2Q15784 382 aa19.34■□□□□ 0.69
PTPN9-201ENST00000306726 ZBED9Q6R2W3 1325 aa19.34■□□□□ 0.69
PTPN9-201ENST00000306726 TET3O43151 1660 aa19.32■□□□□ 0.68
PTPN9-201ENST00000306726 PZPP20742 1482 aa19.31■□□□□ 0.68
PTPN9-201ENST00000306726 RCAN3Q9UKA8 241 aa19.31■□□□□ 0.68
PTPN9-201ENST00000306726 TNNT2P45379 298 aaPredicted RBP19.3■□□□□ 0.68
PTPN9-201ENST00000306726 MROH1Q8NDA8 1641 aa19.3■□□□□ 0.68
PTPN9-201ENST00000306726 RPRD2Q5VT52 1461 aaKnown RBP19.29■□□□□ 0.68
PTPN9-201ENST00000306726 CNTLNQ9NXG0 1405 aa19.29■□□□□ 0.68
PTPN9-201ENST00000306726 CANXP27824 592 aaKnown RBP19.28■□□□□ 0.68
PTPN9-201ENST00000306726 SPRYD3Q8NCJ5 442 aa19.28■□□□□ 0.68
PTPN9-201ENST00000306726 PDE4AP27815 886 aa19.26■□□□□ 0.67
PTPN9-201ENST00000306726 ARHGAP31Q2M1Z3 1444 aa19.25■□□□□ 0.67
PTPN9-201ENST00000306726 ABCC3O15438 1527 aa19.25■□□□□ 0.67
PTPN9-201ENST00000306726 EFCAB6Q5THR3 1501 aa19.25■□□□□ 0.67
PTPN9-201ENST00000306726 CCDC146Q8IYE0 955 aa19.23■□□□□ 0.67
PTPN9-201ENST00000306726 ESF1Q9H501 851 aaKnown RBP19.23■□□□□ 0.67
PTPN9-201ENST00000306726 WASHC2CQ9Y4E1 1318 aa19.22■□□□□ 0.67
PTPN9-201ENST00000306726 CRBNQ96SW2 442 aa19.21■□□□□ 0.67
PTPN9-201ENST00000306726 MROH2AA6NES4 1674 aa19.21■□□□□ 0.67
PTPN9-201ENST00000306726 CAMSAP1Q5T5Y3 1602 aa19.21■□□□□ 0.67
PTPN9-201ENST00000306726 GGT6Q6P531 493 aa19.21■□□□□ 0.67
PTPN9-201ENST00000306726 USP47Q96K76 1375 aa19.2■□□□□ 0.66
PTPN9-201ENST00000306726 ARID4BQ4LE39 1312 aaPredicted RBP19.2■□□□□ 0.66
PTPN9-201ENST00000306726 BRPF3Q9ULD4 1205 aa19.2■□□□□ 0.66
PTPN9-201ENST00000306726 CEP152O94986 1710 aa19.18■□□□□ 0.66
PTPN9-201ENST00000306726 CHGAP10645 457 aaKnown RBP19.18■□□□□ 0.66
PTPN9-201ENST00000306726 RRP1P56182 461 aaKnown RBP19.18■□□□□ 0.66
PTPN9-201ENST00000306726 WDR43Q15061 677 aaKnown RBP eCLIP19.17■□□□□ 0.66
PTPN9-201ENST00000306726 ANKRD30BQ9BXX2 1392 aa19.17■□□□□ 0.66
PTPN9-201ENST00000306726 FRAT1Q92837 279 aaPredicted RBP19.16■□□□□ 0.66
PTPN9-201ENST00000306726 SLKQ9H2G2 1235 aaPredicted RBP19.16■□□□□ 0.66
PTPN9-201ENST00000306726 E9PCH4 1651 aa19.16■□□□□ 0.66
PTPN9-201ENST00000306726 TRPM2O94759 1503 aa19.15■□□□□ 0.66
PTPN9-201ENST00000306726 PTPRTO14522 1441 aa19.15■□□□□ 0.66
PTPN9-201ENST00000306726 NBPF1Q3BBV0 1214 aa19.14■□□□□ 0.66
PTPN9-201ENST00000306726 C20orf194Q5TEA3 1177 aa19.14■□□□□ 0.65
PTPN9-201ENST00000306726 PNISRQ8TF01 805 aaKnown RBP19.14■□□□□ 0.65
PTPN9-201ENST00000306726 SPHKAPQ2M3C7 1700 aa19.14■□□□□ 0.65
PTPN9-201ENST00000306726 NEURL4Q96JN8 1562 aa19.13■□□□□ 0.65
PTPN9-201ENST00000306726 ERICH6BQ5W0A0 696 aa19.12■□□□□ 0.65
PTPN9-201ENST00000306726 CCDC144AA2RUR9 1427 aa19.12■□□□□ 0.65
PTPN9-201ENST00000306726 SIGLEC1Q9BZZ2 1709 aa19.12■□□□□ 0.65
PTPN9-201ENST00000306726 CLTCQ00610 1675 aaKnown RBP19.11■□□□□ 0.65
PTPN9-201ENST00000306726 FER1L4A9Z1Z3 1794 aa19.1■□□□□ 0.65
PTPN9-201ENST00000306726 NPATQ14207 1427 aa19.09■□□□□ 0.65
PTPN9-201ENST00000306726 PANK3Q9H999 370 aa19.09■□□□□ 0.65
PTPN9-201ENST00000306726 NOS1P29475 1434 aa19.08■□□□□ 0.65
PTPN9-201ENST00000306726 STAC3Q96MF2 364 aa19.08■□□□□ 0.64
PTPN9-201ENST00000306726 BCL2L13Q9BXK5 485 aa19.07■□□□□ 0.64
PTPN9-201ENST00000306726 ROCK2O75116 1388 aaKnown RBP19.07■□□□□ 0.64
PTPN9-201ENST00000306726 GZF1Q9H116 711 aaPredicted RBP19.06■□□□□ 0.64
PTPN9-201ENST00000306726 ADAMTSL3P82987 1691 aa19.06■□□□□ 0.64
PTPN9-201ENST00000306726 SPATA31D1Q6ZQQ2 1576 aa19.06■□□□□ 0.64
PTPN9-201ENST00000306726 PREX1Q8TCU6 1659 aa19.05■□□□□ 0.64
PTPN9-201ENST00000306726 SLC52A1Q9NWF4 448 aa19.05■□□□□ 0.64
PTPN9-201ENST00000306726 ERVK-7P63135 1459 aa19.05■□□□□ 0.64
PTPN9-201ENST00000306726 CLUAP1Q96AJ1 413 aa19.05■□□□□ 0.64
PTPN9-201ENST00000306726 RRP7AQ9Y3A4 280 aaKnown RBP19.05■□□□□ 0.64
PTPN9-201ENST00000306726 MLECQ14165 292 aa19.04■□□□□ 0.64
PTPN9-201ENST00000306726 KNSTRNQ9Y448 316 aa19.03■□□□□ 0.64
PTPN9-201ENST00000306726 ZMYM3Q14202 1370 aa19.03■□□□□ 0.64
PTPN9-201ENST00000306726 TCERG1O14776 1098 aaKnown RBP19.02■□□□□ 0.64
PTPN9-201ENST00000306726 PLA2R1Q13018 1463 aa19.01■□□□□ 0.63
PTPN9-201ENST00000306726 PIK3C2BO00750 1634 aa19■□□□□ 0.63
PTPN9-201ENST00000306726 ADAMTS8Q9UP79 889 aa19■□□□□ 0.63
PTPN9-201ENST00000306726 KIF1BO60333 1816 aa18.99■□□□□ 0.63
PTPN9-201ENST00000306726 NLRP13Q86W25 1043 aa18.99■□□□□ 0.63
PTPN9-201ENST00000306726 MYBBP1AQ9BQG0 1328 aaKnown RBP18.99■□□□□ 0.63
PTPN9-201ENST00000306726 KDM5AP29375 1690 aaKnown RBP18.99■□□□□ 0.63
PTPN9-201ENST00000306726 NLRP1Q9C000 1473 aa18.99■□□□□ 0.63
PTPN9-201ENST00000306726 MADDQ8WXG6 1647 aa18.99■□□□□ 0.63
PTPN9-201ENST00000306726 PPM1GO15355 546 aaPredicted RBP18.99■□□□□ 0.63
PTPN9-201ENST00000306726 CLTCL1P53675 1640 aa18.98■□□□□ 0.63
PTPN9-201ENST00000306726 FRAT2O75474 233 aaPredicted RBP18.98■□□□□ 0.63
PTPN9-201ENST00000306726 KTN1Q86UP2 1357 aaKnown RBP18.97■□□□□ 0.63
PTPN9-201ENST00000306726 NFKBIBQ15653 356 aa18.97■□□□□ 0.63
PTPN9-201ENST00000306726 PRKCSHP14314 528 aaPredicted RBP18.97■□□□□ 0.63
PTPN9-201ENST00000306726 RPGRIP1LQ68CZ1 1315 aa18.97■□□□□ 0.63
PTPN9-201ENST00000306726 TNRQ92752 1358 aa18.97■□□□□ 0.63
PTPN9-201ENST00000306726 SYNMO15061 1565 aa18.96■□□□□ 0.63
PTPN9-201ENST00000306726 RIMS1Q86UR5 1692 aaKnown RBP18.96■□□□□ 0.63
PTPN9-201ENST00000306726 C3P01024 1663 aa18.96■□□□□ 0.63
PTPN9-201ENST00000306726 SAFB2Q14151 953 aaKnown RBP eCLIP18.96■□□□□ 0.63
PTPN9-201ENST00000306726 BACH2Q9BYV9 841 aa18.96■□□□□ 0.63
PTPN9-201ENST00000306726 ADGRB3O60242 1522 aa18.94■□□□□ 0.62
PTPN9-201ENST00000306726 SPATA31E1Q6ZUB1 1445 aa18.93■□□□□ 0.62
PTPN9-201ENST00000306726 APAF1O14727 1248 aa18.93■□□□□ 0.62
PTPN9-201ENST00000306726 NUTM2DQ5VT03 806 aaPredicted RBP18.92■□□□□ 0.62
PTPN9-201ENST00000306726 RALBP1Q15311 655 aa18.92■□□□□ 0.62
PTPN9-201ENST00000306726 COG6Q9Y2V7 657 aa18.92■□□□□ 0.62
PTPN9-201ENST00000306726 BCAR3O75815 825 aa18.91■□□□□ 0.62
PTPN9-201ENST00000306726 DDRGK1Q96HY6 314 aa18.91■□□□□ 0.62
PTPN9-201ENST00000306726 SMG6Q86US8 1419 aaKnown RBP18.91■□□□□ 0.62
PTPN9-201ENST00000306726 GSE1Q14687 1217 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms