RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	CLCN4	P51793	760 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	SYCE2	Q6PIF2	218 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	RSPO2	Q6UXX9	243 aa	Predicted RBP	28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	XXYLT1	Q8NBI6	393 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	FEZF2	Q8TBJ5	459 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	CCDC34	Q96HJ3	373 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	SUSD3	Q96L08	255 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	CLSTN3	Q9BQT9	956 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	EMILIN2	Q9BXX0	1053 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	DPP3	Q9NY33	737 aa		28.92	■■■□□ 2.22
VEGFA-231	ENST00000640499	PDXK	O00764	312 aa		28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	SPTLC1	O15269	473 aa		28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	ADAM12	O43184	909 aa		28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	XPOT	O43592	962 aa	Known RBP	28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	KIN	O60870	393 aa	Known RBP	28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	KLRC2	P26717	231 aa		28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	SNRNP35	Q16560	246 aa	Known RBP	28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	GUF1	Q8N442	669 aa	Known RBP	28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	KIAA1586	Q9HCI6	787 aa		28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	FNIP2	Q9P278	1114 aa		28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	TCF20	Q9UGU0	1960 aa	Known RBP	28.91	■■■□□ 2.22
VEGFA-231	ENST00000640499	ANKRD54	Q6NXT1	300 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	NT5DC4	Q86YG4	428 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	SLC9A9	Q8IVB4	645 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	PLEKHO2	Q8TD55	490 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	S1PR5	Q9H228	398 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	TRAF3IP3	Q9Y228	551 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	NUB1	Q9Y5A7	615 aa		28.9	■■■□□ 2.22
VEGFA-231	ENST00000640499	GRXCR2	A6NFK2	248 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499		M0QZQ0	153 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	TRAPPC3	O43617	180 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	MCM4	P33991	863 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	LILRA4	P59901	499 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	TFAM	Q00059	246 aa	Known RBP	28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	CYP24A1	Q07973	514 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	MRPL58	Q14197	206 aa	Known RBP	28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	PSMD5	Q16401	504 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	AAK1	Q2M2I8	961 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	ZCWPW2	Q504Y3	356 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	TJAP1	Q5JTD0	557 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	ZNF658	Q5TYW1	1059 aa	Predicted RBP	28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	LMBRD2	Q68DH5	695 aa	Predicted RBP	28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	LILRA6	Q6PI73	481 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	C1orf127	Q8N9H9	656 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	OR5B17	Q8NGF7	314 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	GOLGA5	Q8TBA6	731 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	SMARCE1	Q969G3	411 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	BORCS6	Q96GS4	357 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	MFSD14A	Q96MC6	490 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	CD207	Q9UJ71	328 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	MAN1B1	Q9UKM7	699 aa		28.89	■■■□□ 2.22
VEGFA-231	ENST00000640499	FSD2	A1L4K1	749 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	TBC1D4	O60343	1298 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	NR3C1	P04150	777 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	BMP6	P22004	513 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	PRCP	P42785	496 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	CASP4	P49662	377 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	GLYCTK	Q8IVS8	523 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	SMRP1	Q8NCR6	262 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	LMBRD1	Q9NUN5	540 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	RMND1	Q9NWS8	449 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	MTRR	Q9UBK8	725 aa		28.88	■■■□□ 2.21
VEGFA-231	ENST00000640499	MBTPS2	O43462	519 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	SMC2	O95347	1197 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	ADH1A	P07327	375 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	IL9	P15248	144 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	PSMD6	Q15008	389 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	VARS2	Q5ST30	1063 aa	Known RBP	28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	PTCRA	Q6ISU1	281 aa	Predicted RBP	28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	PPFIBP1	Q86W92	1011 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	PALB2	Q86YC2	1186 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	CASP10	Q92851	521 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	POP1	Q99575	1024 aa	Known RBP	28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	INTS13	Q9NVM9	706 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	SIX4	Q9UIU6	781 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	PCDHB8	Q9UN66	801 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	C5orf42	Q9H799	3197 aa		28.87	■■■□□ 2.21
VEGFA-231	ENST00000640499	TULP1	O00294	542 aa	Predicted RBP	28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	SYN3	O14994	580 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	EXOC3	O60645	756 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	COBLL1	Q53SF7	1204 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	ISM2	Q6H9L7	571 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	C12orf76	Q8N812	135 aa	Predicted RBP	28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	ZNF516	Q92618	1163 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	APOL5	Q9BWW9	433 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	MTMR12	Q9C0I1	747 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	CDH22	Q9UJ99	828 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	HOOK1	Q9UJC3	728 aa	Known RBP	28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	BACE2	Q9Y5Z0	518 aa		28.86	■■■□□ 2.21
VEGFA-231	ENST00000640499	TGM5	O43548	720 aa		28.85	■■■□□ 2.21
VEGFA-231	ENST00000640499	SPATA31D3	P0C874	917 aa		28.85	■■■□□ 2.21
VEGFA-231	ENST00000640499	MYBPC2	Q14324	1141 aa		28.85	■■■□□ 2.21
VEGFA-231	ENST00000640499	NFIL3	Q16649	462 aa		28.85	■■■□□ 2.21
VEGFA-231	ENST00000640499	SPATA31D4	Q6ZUB0	917 aa		28.85	■■■□□ 2.21
VEGFA-231	ENST00000640499	TIMM13	Q9Y5L4	95 aa	Predicted RBP	28.85	■■■□□ 2.21
VEGFA-231	ENST00000640499	ITGB3	P05106	788 aa		28.84	■■■□□ 2.21
VEGFA-231	ENST00000640499	CD44	P16070	742 aa	Known RBP	28.84	■■■□□ 2.21
VEGFA-231	ENST00000640499	SMAD4	Q13485	552 aa	Known RBP	28.84	■■■□□ 2.21

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms