RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 RPUSD3Q6P087 351 aaKnown RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 OLFML1Q6UWY5 402 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ZPBP2Q6X784 338 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 LIPIQ6XZB0 460 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 INTS8Q75QN2 995 aaKnown RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 LPCAT2Q7L5N7 544 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 SRGAP1Q7Z6B7 1085 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 LSRQ86X29 649 aaPredicted RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 NOSTRINQ8IVI9 506 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 MCATQ8IVS2 390 aaKnown RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 PEX5LQ8IYB4 626 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 CCDC170Q8IYT3 715 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 KRT222Q8N1A0 295 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 TMEM57Q8N5G2 664 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 USHBP1Q8N6Y0 703 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 PPM1NQ8N819 430 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 FAM184AQ8NB25 1140 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 FAM156AQ8NDB6 213 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ZMIZ2Q8NF64 920 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 TOR1AIP2Q8NFQ8 470 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ANKRD24Q8TF21 1146 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ASB12Q8WXK4 309 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ATP2A3Q93084 1043 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 HPS3Q969F9 1004 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 KIAA1191Q96A73 305 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ACSF2Q96CM8 615 aaPredicted RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 ZNF845Q96IR2 970 aaPredicted RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 COG3Q96JB2 828 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 C8orf76Q96K31 380 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ZSCAN31Q96LW9 406 aaPredicted RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 CEP295NLQ96MC4 621 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 C8orf49Q96NF6 230 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 SH3GL1Q99961 368 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 HERC2P3Q9BVR0 1158 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 EDEM3Q9BZQ6 932 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 TRIM7Q9C029 511 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ARHGAP39Q9C0H5 1083 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 MTFR1LQ9H019 292 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 SIL1Q9H173 461 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 GHITMQ9H3K2 345 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 MROH8Q9H579 483 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 IFT22Q9H7X7 185 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 ACAD9Q9H845 621 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 LIN28AQ9H9Z2 209 aaKnown RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 UBAP1Q9NZ09 502 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 APOBEC2Q9Y235 224 aaKnown RBP3.3□□□□□ -1.88
VIM-210ENST00000637053 KIF3AQ9Y496 699 aa3.3□□□□□ -1.88
VIM-210ENST00000637053 FLT1P17948 1338 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PGPEP1LA6NFU8 196 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 LRRC14BA6NHZ5 514 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CCDC169A6NNP5 214 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 UPK3BL1B0FP48 263 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 UPK3BL2E5RIL1 263 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 SGK1O00141 431 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TXNL1O43396 289 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 AP1G1O43747 822 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CEP104O60308 925 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ZEB2O60315 1214 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ZNF254O75437 659 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 URI1O94763 535 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 EPN2O95208 641 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 SMC2O95347 1197 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PLATP00750 562 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PF4P02776 101 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 HRGP04196 525 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PDHA1P08559 390 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CLTBP09497 229 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PYGMP11217 842 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 IMPDH2P12268 514 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TNNT1P13805 278 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TMEM11P17152 192 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ALOX12P18054 663 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TACR2P21452 398 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CNR2P34972 360 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 KIR2DL1P43626 348 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 KIR2DL2P43627 348 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 PSMC4P43686 418 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 NOP2P46087 812 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 ATP5OP48047 213 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TUBP50607 506 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TKTL1P51854 596 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 NEK4P51957 841 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CCNA1P78396 465 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PPARDQ03181 441 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ICA1Q05084 483 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 IKQ13123 557 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 KRT32Q14532 448 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 KCNB1Q14721 858 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 INAQ16352 499 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 MAP3K11Q16584 847 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 IMMTQ16891 758 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 ANO4Q32M45 955 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ARL13BQ3SXY8 428 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 KRT71Q3SY84 523 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 SUPT20HL1Q3ZLR7 823 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CEP55Q53EZ4 464 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 IFIT1BQ5T764 474 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 TTC19Q6DKK2 380 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 WDR73Q6P4I2 378 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms