RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 KIAA0391O15091 583 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 CLIC2O15247 247 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 FAM189A1O60320 539 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 LILRB3O75022 631 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 LDHAP00338 332 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 GLUD1P00367 558 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 SNRPFP62306 86 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 NHLH1Q02575 133 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 TUSC3Q13454 348 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 ENOX2Q16206 610 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 SLC10A6Q3KNW5 377 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 USP41Q3LFD5 358 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 ZNF658Q5TYW1 1059 aaPredicted RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 CCDC149Q6ZUS6 474 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 GPR149Q86SP6 731 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 UBALD2Q8IYN6 164 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 SMYD4Q8IYR2 804 aaPredicted RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 PRRX2Q99811 253 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 GTPBP4Q9BZE4 634 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 CXCL16Q9H2A7 254 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 PLEKHA5Q9HAU0 1116 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 MAN1C1Q9NR34 630 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 HSPBP1Q9NZL4 362 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 CGNQ9P2M7 1197 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 CPSF3Q9UKF6 684 aaKnown RBP19.66■□□□□ 0.74
CLN3-243ENST00000635973 ADAM28Q9UKQ2 775 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 USTQ9Y2C2 406 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 C2orf16Q68DN1 1984 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 TRIOO75962 3097 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 MTCL1Q9Y4B5 1905 aaKnown RBP19.65■□□□□ 0.74
CLN3-243ENST00000635973 SMIM28A0A1B0GU29 152 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 TEX28O15482 410 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 TGFB1I1O43294 461 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 EXTL3O43909 919 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 CYP2J2P51589 502 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 DSG1Q02413 1049 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 CREMQ03060 361 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 KIAA0319Q5VV43 1072 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 FUT10Q6P4F1 479 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 C15orf39Q6ZRI6 1047 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 OTOP3Q7RTS5 596 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 ZDHHC14Q8IZN3 488 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 GPD1LQ8N335 351 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 GUF1Q8N442 669 aaKnown RBP19.65■□□□□ 0.74
CLN3-243ENST00000635973 KIF12Q96FN5 646 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 NUP62CLQ9H1M0 184 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 CLSTN2Q9H4D0 955 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLN3-243ENST00000635973 LIMD1Q9UGP4 676 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 MAN1B1Q9UKM7 699 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 DENND4AQ7Z401 1863 aa19.65■□□□□ 0.74
CLN3-243ENST00000635973 LACTBL1A8MY62 500 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 CALUO43852 315 aaPredicted RBP19.64■□□□□ 0.73
CLN3-243ENST00000635973 KCNE1P15382 129 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 MRE11P49959 708 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 SPAG1Q07617 926 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 STIM1Q13586 685 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 HSP90AA2PQ14568 343 aaPredicted RBP19.64■□□□□ 0.73
CLN3-243ENST00000635973 XKR4Q5GH76 650 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 ISM2Q6H9L7 571 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 ALKAL1Q6UXT8 129 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 PALB2Q86YC2 1186 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 CD302Q8IX05 232 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 SPATA20Q8TB22 786 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 RIN2Q8WYP3 895 aaPredicted RBP19.64■□□□□ 0.73
CLN3-243ENST00000635973 RABGGTAQ92696 567 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 PPP1R10Q96QC0 940 aaKnown RBP19.64■□□□□ 0.73
CLN3-243ENST00000635973 RBAKQ9NYW8 714 aaPredicted RBP19.64■□□□□ 0.73
CLN3-243ENST00000635973 CACNG4Q9UBN1 327 aa19.64■□□□□ 0.73
CLN3-243ENST00000635973 SF3B1O75533 1304 aaKnown RBP eCLIP19.64■□□□□ 0.733e-9■■■■■ 164.7
CLN3-243ENST00000635973 ZNF318Q5VUA4 2279 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 CCDC195A0A1B0GUA6 201 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 TTC26A0AVF1 554 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 F8W810 466 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 BIN1O00499 593 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 MEFVO15553 781 aaPredicted RBP19.63■□□□□ 0.73
CLN3-243ENST00000635973 XPOTO43592 962 aaKnown RBP19.63■□□□□ 0.73
CLN3-243ENST00000635973 MBD3O95983 291 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 GLYCTKQ8IVS8 523 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 RNF168Q8IYW5 571 aaPredicted RBP19.63■□□□□ 0.73
CLN3-243ENST00000635973 ZSWIM2Q8NEG5 633 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 ASIC4Q96FT7 647 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 B3GALT6Q96L58 329 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 ZMAT2Q96NC0 199 aaKnown RBP19.63■□□□□ 0.73
CLN3-243ENST00000635973 GPR62Q9BZJ7 368 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 PIDD1Q9HB75 910 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 RXFP1Q9HBX9 757 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 KIAA1586Q9HCI6 787 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 CHST7Q9NS84 486 aa19.63■□□□□ 0.73
CLN3-243ENST00000635973 PDXKO00764 312 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 EXOC3O60645 756 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 IL18RAPO95256 599 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 ASGR2P07307 311 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 POU5F1Q01860 360 aaKnown RBP19.62■□□□□ 0.73
CLN3-243ENST00000635973 TMEM132DQ14C87 1099 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 CRELD2Q6UXH1 353 aaPredicted RBP19.62■□□□□ 0.73
CLN3-243ENST00000635973 CYP26C1Q6V0L0 522 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 BRSK2Q8IWQ3 736 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 C12orf56Q8IXR9 622 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 XXYLT1Q8NBI6 393 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms