RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SMAD2Q15796 467 aaKnown RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 SKOR2Q2VWA4 1001 aaPredicted RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 CEP135Q66GS9 1140 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 BEST2Q8NFU1 509 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 RABGGTAQ92696 567 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 DDX27Q96GQ7 796 aaKnown RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 TMEM169Q96HH4 297 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 DUSP9Q99956 384 aaKnown RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 GZF1Q9H116 711 aaPredicted RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 ALG13Q9NP73 1137 aaKnown RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 CLDND1Q9NY35 253 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 FRMD4BQ9Y2L6 1034 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 PLXNA4Q9HCM2 1894 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 MYO7AQ13402 2215 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 TMEM189-UBE2V1I3L0A0 370 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 PODXLO00592 558 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 CETN3O15182 167 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 KIF4AO95239 1232 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 KRT17Q04695 432 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 NFKBIBQ15653 356 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 DCLRE1AQ6PJP8 1040 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 TMEM130Q8N3G9 435 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 PLEKHO2Q8TD55 490 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 MKNK1Q9BUB5 465 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 RWDD2AQ9UIY3 292 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 ADAM28Q9UKQ2 775 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 WDFY4Q6ZS81 3184 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 PTPRJQ12913 1337 aa19.67■□□□□ 0.74
LIG1-216ENST00000598938 DNAJB1P25685 340 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 IRS1P35568 1242 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 PSMC2P35998 433 aaKnown RBP19.66■□□□□ 0.74
LIG1-216ENST00000598938 GUCY2FP51841 1108 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 STX17P56962 302 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 MCCD1P59942 119 aaPredicted RBP19.66■□□□□ 0.74
LIG1-216ENST00000598938 CD300LGQ6UXG3 332 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 DDX53Q86TM3 631 aaKnown RBP19.66■□□□□ 0.74
LIG1-216ENST00000598938 WDR49Q8IV35 697 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 FAM186BQ8IYM0 893 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 C3orf58Q8NDZ4 430 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 PARD3BQ8TEW8 1205 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 CACTINQ8WUQ7 758 aaKnown RBP19.66■□□□□ 0.74
LIG1-216ENST00000598938 POF1BQ8WVV4 589 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 MED15Q96RN5 788 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 CGRRF1Q99675 332 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 VN1R3Q9BXE9 311 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 INTS13Q9NVM9 706 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 STK39Q9UEW8 545 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 DACH1Q9UI36 760 aa19.66■□□□□ 0.74
LIG1-216ENST00000598938 ANO9A1A5B4 782 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 SLC16A3O15427 465 aaKnown RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 IGFBP6P24592 240 aaPredicted RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 LTBRP36941 435 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 CLDN10P78369 228 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 TFAMQ00059 246 aaKnown RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 ENPEPQ07075 957 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 CAMK1Q14012 370 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 CT47A1Q5JQC4 288 aaPredicted RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 LMBRD2Q68DH5 695 aaPredicted RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 SASS6Q6UVJ0 657 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 EP400NLQ6ZTU2 488 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 RNF168Q8IYW5 571 aaPredicted RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 OR5B17Q8NGF7 314 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 TMC2Q8TDI7 906 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 CCDC127Q96BQ5 260 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 EEF2KMTQ96G04 330 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 BORCS6Q96GS4 357 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 CEP63Q96MT8 703 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 FNBP1Q96RU3 617 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 DPP3Q9NY33 737 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 PUF60Q9UHX1 559 aaKnown RBP19.65■□□□□ 0.74
LIG1-216ENST00000598938 TRIOO75962 3097 aa19.65■□□□□ 0.74
LIG1-216ENST00000598938 LRRIQ3A6PVS8 624 aaPredicted RBP19.64■□□□□ 0.73
LIG1-216ENST00000598938 MBTPS2O43462 519 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 TADA2AO75478 443 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 B3GAT3O94766 335 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 TMEM191BP0C7N4 346 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 DLATP10515 647 aaKnown RBP19.64■□□□□ 0.73
LIG1-216ENST00000598938 ERCC5P28715 1186 aaPredicted RBP19.64■□□□□ 0.73
LIG1-216ENST00000598938 DUOXA2Q1HG44 320 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 C9orf57Q5W0N0 161 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 FUT10Q6P4F1 479 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 HFE2Q6ZVN8 426 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 INTS8Q75QN2 995 aaKnown RBP19.64■□□□□ 0.73
LIG1-216ENST00000598938 FILIP1Q7Z7B0 1213 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 C1orf127Q8N9H9 656 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 CXorf38Q8TB03 319 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 HASPINQ8TF76 798 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 ANKRD36BP1Q96IX9 119 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 FAM84AQ96KN4 292 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 MTMR12Q9C0I1 747 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 C5orf42Q9H799 3197 aa19.64■□□□□ 0.73
LIG1-216ENST00000598938 SF3B1O75533 1304 aaKnown RBP eCLIP19.63■□□□□ 0.73
LIG1-216ENST00000598938 TULP1O00294 542 aaPredicted RBP19.63■□□□□ 0.73
LIG1-216ENST00000598938 PIRO00625 290 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 PPEF2O14830 753 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 FSCN2O14926 492 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 LETM1O95202 739 aaPredicted RBP19.63■□□□□ 0.73
LIG1-216ENST00000598938 EPB41P11171 864 aaKnown RBP19.63■□□□□ 0.73
LIG1-216ENST00000598938 TNNI1P19237 187 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 DLG4P78352 724 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms