RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NFIL3Q16649 462 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 USP41Q3LFD5 358 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 CEP57Q86XR8 500 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 EFHBQ8N7U6 833 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 GOLGA5Q8TBA6 731 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 SLC22A17Q8WUG5 538 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 CCDC127Q96BQ5 260 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 MED15Q96RN5 788 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 TTPALQ9BTX7 342 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 MTMR12Q9C0I1 747 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 INTS13Q9NVM9 706 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 CLEC1BQ9P126 229 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 SPTBN5Q9NRC6 3674 aaKnown RBP15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 TEX28O15482 410 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 TBX10O75333 385 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 KIF20AO95235 890 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 CST3P01034 146 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 NR2F2P24468 414 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 LILRA4P59901 499 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 MYBPC2Q14324 1141 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 LLGL2Q6P1M3 1020 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 PARD3BQ8TEW8 1205 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 PIK3R5Q8WYR1 880 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 PABPC5Q96DU9 382 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 SUSD3Q96L08 255 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 DUSP9Q99956 384 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 CLSTN3Q9BQT9 956 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 UBE2ZQ9H832 354 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 MRPL17Q9NRX2 175 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 CLDND1Q9NY35 253 aa15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 TIMM13Q9Y5L4 95 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 TDRD15B5MCY1 1934 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-217ENST00000598558 LRRIQ3A6PVS8 624 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 H3BQ06 376 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 XPOTO43592 962 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 TBC1D4O60343 1298 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 ITGB3P05106 788 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 URODP06132 367 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 DLATP10515 647 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 EPCAMP16422 314 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 CCNE1P24864 410 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 POLR2BP30876 1174 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 MCM4P33991 863 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 ADAM9Q13443 819 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 MRPL58Q14197 206 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 CEP135Q66GS9 1140 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 KIAA1841Q6NSI8 718 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 NT5DC4Q86YG4 428 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 GLYCTKQ8IVS8 523 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 ZC3H3Q8IXZ2 948 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 HLA-CQ95604 372 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 CGRRF1Q99675 332 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 BARX2Q9UMQ3 279 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 AGAP1Q9UPQ3 857 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 NUB1Q9Y5A7 615 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 HCFC2Q9Y5Z7 792 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 TRIP11Q15643 1979 aa15.36■□□□□ 0.05
SHKBP1-217ENST00000598558 M0QZQ0 153 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 KCNA5P22460 613 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 CLCN4P51793 760 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 STX17P56962 302 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 MCCD1P59942 119 aaPredicted RBP15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 CLDN10P78369 228 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 ELAVL2Q12926 359 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 DUOXA2Q1HG44 320 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 EDRF1Q3B7T1 1238 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 VARS2Q5ST30 1063 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 KLHL10Q6JEL2 608 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 TTI2Q6NXR4 508 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 LILRA6Q6PI73 481 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 EP400NLQ6ZTU2 488 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 TRAPPC11Q7Z392 1133 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 WDR49Q8IV35 697 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 GPR65Q8IYL9 337 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 CSGALNACT2Q8N6G5 542 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 ELMO3Q96BJ8 720 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 DHTKD1Q96HY7 919 aaPredicted RBP15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 MSLNLQ96KJ4 702 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 SENP8Q96LD8 212 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 NUP62CLQ9H1M0 184 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 STK39Q9UEW8 545 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 PCDHB8Q9UN66 801 aa15.35■□□□□ 0.05
SHKBP1-217ENST00000598558 PRUNE2Q8WUY3 3088 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 TRAPPC3O43617 180 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 C4BPAP04003 597 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 TMEM191BP0C7N4 346 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 SPATA31D3P0C874 917 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 KLRC2P26717 231 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 SURF1Q15526 300 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 CLUL1Q15846 466 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 PSMD5Q16401 504 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 SYCE2Q6PIF2 218 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 TMEM184AQ6ZMB5 413 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 SPATA31D4Q6ZUB0 917 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 PALB2Q86YC2 1186 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 C12orf76Q8N812 135 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 CACTINQ8WUQ7 758 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 NELFBQ8WX92 580 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms