RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 H0YIN7 160 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 TLR3O15455 904 aaKnown RBP16.19■□□□□ 0.18
UPF1-204ENST00000596842 CYP1A2P05177 515 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 MSH2P43246 934 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 GRK7Q8WTQ7 553 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 RMDN3Q96TC7 470 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 ROPN1BQ9BZX4 212 aaPredicted RBP16.19■□□□□ 0.18
UPF1-204ENST00000596842 LRRC19Q9H756 370 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 ROPN1Q9HAT0 212 aaPredicted RBP16.19■□□□□ 0.18
UPF1-204ENST00000596842 NOP53Q9NZM5 478 aaKnown RBP16.19■□□□□ 0.18
UPF1-204ENST00000596842 GABBR1Q9UBS5 961 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 IL9RQ01113 521 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 BRDTQ58F21 947 aaPredicted RBP16.19■□□□□ 0.18
UPF1-204ENST00000596842 TMEM8AQ9HCN3 771 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 KCND2Q9NZV8 630 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 hCG_2014768A0A024R1R8 64 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 TCF4P15884 667 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 FOXN2P32314 431 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 MAGEA4P43358 317 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 LIG4P49917 911 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 OVGP1Q12889 678 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 MTERF2Q49AM1 385 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 WLSQ5T9L3 541 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 HHATQ5VTY9 493 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 ARHGEF16Q5VV41 709 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 MCOLN2Q8IZK6 566 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 PSPC1Q8WXF1 523 aaKnown RBP16.19■□□□□ 0.18
UPF1-204ENST00000596842 BSNDQ8WZ55 320 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 RIT2Q99578 217 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 WHRNQ9P202 907 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 TELO2Q9Y4R8 837 aa16.19■□□□□ 0.18
UPF1-204ENST00000596842 SGK1O00141 431 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 CDH16O75309 829 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 ARSEP51690 589 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 RPS6P62753 249 aaKnown RBP16.18■□□□□ 0.18
UPF1-204ENST00000596842 STRN3Q13033 797 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 CLEC16AQ2KHT3 1053 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 SPDYCQ5MJ68 293 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 DCUN1D2Q6PH85 259 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 DPH6Q7L8W6 267 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 NLGN1Q8N2Q7 840 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 CKAP2Q8WWK9 683 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 EME2A4GXA9 379 aaPredicted RBP16.18■□□□□ 0.18
UPF1-204ENST00000596842 CFAP73A6NFT4 308 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 FSCN2O14926 492 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 MRPS9P82933 396 aaKnown RBP16.18■□□□□ 0.18
UPF1-204ENST00000596842 ZNF668Q96K58 619 aaPredicted RBP16.18■□□□□ 0.18
UPF1-204ENST00000596842 TCHPQ9BT92 498 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 TMEM165Q9HC07 324 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 KRT1P04264 644 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 PKN2Q16513 984 aaKnown RBP16.18■□□□□ 0.18
UPF1-204ENST00000596842 SWSAP1Q6NVH7 229 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 CCDC89Q8N998 374 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 SERPINA10Q9UK55 444 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 DNPEPQ9ULA0 475 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 MROH7Q68CQ1 1323 aa16.18■□□□□ 0.18
UPF1-204ENST00000596842 CBX6O95503 412 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 MXRA7P84157 204 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 NFIL3Q16649 462 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 LIN9Q5TKA1 542 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 ECHDC2Q86YB7 292 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.17■□□□□ 0.18
UPF1-204ENST00000596842 NEU2Q9Y3R4 380 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 KAT6AQ92794 2004 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 ASTN2O75129 1339 aaPredicted RBP16.17■□□□□ 0.18
UPF1-204ENST00000596842 LRRD1A4D1F6 860 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 LRRIQ4A6NIV6 560 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 GSTA1P08263 222 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 CETN2P41208 172 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 RPL7AP62424 266 aaKnown RBP16.17■□□□□ 0.18
UPF1-204ENST00000596842 SMTNL2Q2TAL5 461 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 PCNX4Q63HM2 1172 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 ANKRD35Q8N283 1001 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 LRRC8CQ8TDW0 803 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 ZBTB45Q96K62 511 aaPredicted RBP16.17■□□□□ 0.18
UPF1-204ENST00000596842 MYLK2Q9H1R3 596 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 ATP6V0A4Q9HBG4 840 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 AGO4Q9HCK5 861 aaKnown RBP16.17■□□□□ 0.18
UPF1-204ENST00000596842 POTEJP0CG39 1038 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 SCARA5Q6ZMJ2 495 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 NLRX1Q86UT6 975 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 TRABDQ9H4I3 376 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 C15orf41Q9Y2V0 281 aa16.17■□□□□ 0.18
UPF1-204ENST00000596842 CCDC189A1A4V9 331 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 PDHA1P08559 390 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 GNA15P30679 374 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 GTF2BQ00403 316 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 MGAT5Q09328 741 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 RFX8Q6ZV50 586 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 ANKS1BQ7Z6G8 1248 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 TMEM161BQ8NDZ6 487 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 TMEM143Q96AN5 459 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 SMC6Q96SB8 1091 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 TMEM121Q9BTD3 319 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 RANBP17Q9H2T7 1088 aaKnown RBP16.16■□□□□ 0.18
UPF1-204ENST00000596842 FAM47DPA6NHR8 397 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 TP73O15350 636 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 P4HA2O15460 535 aa16.16■□□□□ 0.18
UPF1-204ENST00000596842 PDIA2Q13087 525 aaKnown RBP16.16■□□□□ 0.18
UPF1-204ENST00000596842 TAF11Q15544 211 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms