RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 KDM3AQ9Y4C1 1321 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 H0YIN7 160 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 WNT7AO00755 349 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 CLDN3O15551 220 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 LDHAP00338 332 aaKnown RBP12.96□□□□□ -0.33
LIG1-207ENST00000594759 CYP2D6P10635 497 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 CYP11B2P19099 503 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 ANXA13P27216 316 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 CIITAP33076 1130 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 ARHGAP4P98171 946 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 COASYQ13057 564 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 PDAP1Q13442 181 aaKnown RBP12.96□□□□□ -0.33
LIG1-207ENST00000594759 DRAP1Q14919 205 aaPredicted RBP12.96□□□□□ -0.33
LIG1-207ENST00000594759 PYDC1Q8WXC3 89 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 RSAD2Q8WXG1 361 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 EFHD1Q9BUP0 239 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 CPVLQ9H3G5 476 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 TRIM17Q9Y577 477 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 SRGAP2CP0DJJ0 459 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 SRGAP2BP0DMP2 458 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 MAP4P27816 1152 aaKnown RBP12.96□□□□□ -0.33
LIG1-207ENST00000594759 HMOX2P30519 316 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 ARL1P40616 181 aaPredicted RBP12.96□□□□□ -0.33
LIG1-207ENST00000594759 ADCY7P51828 1080 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 ZNF200P98182 395 aaPredicted RBP12.96□□□□□ -0.33
LIG1-207ENST00000594759 LPIN1Q14693 890 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 EFHC1Q5JVL4 640 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 MIIPQ5JXC2 388 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 PPP4R3CPQ6ZMV5 832 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 NUDCD3Q8IVD9 361 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 PPM1KQ8N3J5 372 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 ATL2Q8NHH9 583 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 NRBF2Q96F24 287 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 AGBL1Q96MI9 1066 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 ACAP3Q96P50 834 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 TMEM120AQ9BXJ8 343 aa12.96□□□□□ -0.33
LIG1-207ENST00000594759 CCDC195A0A1B0GUA6 201 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.96□□□□□ -0.34
LIG1-207ENST00000594759 GOLGA8SH3BPF8 625 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 GOLGA8MH3BSY2 632 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 CCNB1P14635 433 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 LSAMPQ13449 338 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 RRP1BQ14684 758 aaKnown RBP12.96□□□□□ -0.34
LIG1-207ENST00000594759 ACSBG2Q5FVE4 666 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 C1QTNF12Q5T7M4 302 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 WDR78Q5VTH9 848 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 KRT27Q7Z3Y8 459 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 NT5DC3Q86UY8 548 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 LRRC47Q8N1G4 583 aaKnown RBP12.96□□□□□ -0.34
LIG1-207ENST00000594759 MTA3Q9BTC8 594 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 FHDC1Q9C0D6 1143 aaPredicted RBP12.96□□□□□ -0.34
LIG1-207ENST00000594759 RAB20Q9NX57 234 aa12.96□□□□□ -0.34
LIG1-207ENST00000594759 FCHO1O14526 889 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 TRMUO75648 421 aaKnown RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 FAM58BPP0C7Q3 252 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 TAC1P20366 129 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PMLP29590 882 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PRAMEP78395 509 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PDIA2Q13087 525 aaKnown RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 RFWD3Q6PCD5 774 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PDZD8Q8NEN9 1154 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 EME1Q96AY2 570 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 DBNDD1Q9H9R9 158 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 NARFQ9UHQ1 456 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 ZNF229Q9UJW7 825 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 ZBTB21Q9ULJ3 1066 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 ABCB11O95342 1321 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 FOXP2O15409 715 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 TMEM253P0C7T8 217 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 ACVR2BQ13705 512 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 NKX1-1Q15270 411 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 CCDC153Q494R4 210 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PCNX4Q63HM2 1172 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 NXNQ6DKJ4 435 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PLEKHA7Q6IQ23 1121 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 DQX1Q8TE96 717 aaKnown RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 PSMC3IPQ9P2W1 217 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 CHKBQ9Y259 395 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 SPATA31A1Q5TZJ5 1347 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 UBR1Q8IWV7 1749 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 POTEFA5A3E0 1075 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PSMC2P35998 433 aaKnown RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 PABPC4Q13310 644 aaKnown RBP eCLIP12.95□□□□□ -0.342e-6■■■■□ 26.1
LIG1-207ENST00000594759 LMBRD2Q68DH5 695 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 ZNF746Q6NUN9 644 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 ZNF75CPQ92670 426 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 VPS50Q96JG6 964 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 TTYH3Q9C0H2 523 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 PRM3Q9NNZ6 103 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 UBE2TQ9NPD8 197 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 ATAD3AQ9NVI7 634 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 WASF2Q9Y6W5 498 aa12.95□□□□□ -0.34
LIG1-207ENST00000594759 FRMPD2Q68DX3 1309 aaPredicted RBP12.95□□□□□ -0.34
LIG1-207ENST00000594759 LOC100653049A0A140TA62 436 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 KRT34O76011 436 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 EYA4O95677 639 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 POTEIP0CG38 1075 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CREB1P16220 341 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 GNAZP19086 355 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 PPARGP37231 505 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms