RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 BEST2Q8NFU1 509 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 SLC7A14Q8TBB6 771 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 DHX58Q96C10 678 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 KBTBD4Q9NVX7 518 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 XYLBO75191 536 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 GBP2P32456 591 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-203ENST00000593582 POU5F1Q01860 360 aaKnown RBP16.58■□□□□ 0.24
TRIM28-203ENST00000593582 KCNA1Q09470 495 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 TMEM132DQ14C87 1099 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 SPATA1Q5VX52 437 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 JADE1Q6IE81 842 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 SLC8B1Q6J4K2 584 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 PBXIP1Q96AQ6 731 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 ASB7Q9H672 318 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 FAM13BQ9NYF5 915 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.58■□□□□ 0.249e-8■□□□□ 9.1
TRIM28-203ENST00000593582 PCDHB8Q9UN66 801 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 DERAQ9Y315 318 aa16.58■□□□□ 0.24
TRIM28-203ENST00000593582 POLR2DO15514 142 aaKnown RBP16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ADSSP30520 456 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ELF1P32519 619 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 CASP5P51878 434 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ARPP19P56211 112 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ROR1Q01973 937 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 DNM1Q05193 864 aaKnown RBP16.57■□□□□ 0.24
TRIM28-203ENST00000593582 MRPL58Q14197 206 aaKnown RBP16.57■□□□□ 0.24
TRIM28-203ENST00000593582 CTXN3Q4LDR2 81 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ZNF280DQ6N043 979 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 STXBP4Q6ZWJ1 553 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 BMP8AQ7Z5Y6 402 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 GRASPQ7Z6J2 395 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ZNF461Q8TAF7 563 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 TRIM9Q9C026 710 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 IKZF4Q9H2S9 585 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 MAGEF1Q9HAY2 307 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 PCDHA7Q9UN72 937 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 POLIQ9UNA4 740 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 C2CD2Q9Y426 696 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 ARIH1Q9Y4X5 557 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-203ENST00000593582 VWA8A3KMH1 1905 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 MYH15Q9Y2K3 1946 aa16.57■□□□□ 0.24
TRIM28-203ENST00000593582 WDFY4Q6ZS81 3184 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 M0QZQ0 153 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 CCL16O15467 120 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 TBC1D4O60343 1298 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 N4BP1O75113 896 aaKnown RBP16.56■□□□□ 0.24
TRIM28-203ENST00000593582 NFICP08651 508 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 POU2F2P09086 479 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 PAX3P23760 479 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 GUCY2FP51841 1108 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 ASIC1P78348 528 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 RESP18Q5W5W9 173 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 DSTYKQ6XUX3 929 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 GET4Q7L5D6 327 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-203ENST00000593582 USP37Q86T82 979 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 TMEM130Q8N3G9 435 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 ASIC4Q96FT7 647 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 PYM1Q9BRP8 204 aaKnown RBP16.56■□□□□ 0.24
TRIM28-203ENST00000593582 OXCT2Q9BYC2 517 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-203ENST00000593582 TMEM206Q9H813 350 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 KCNK12Q9HB15 430 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 IGSF9Q9P2J2 1179 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 EPS15L1Q9UBC2 864 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 FBXL5Q9UKA1 691 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 RCOR1Q9UKL0 485 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 C2orf16Q68DN1 1984 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 DENND4AQ7Z401 1863 aa16.56■□□□□ 0.24
TRIM28-203ENST00000593582 WDR27A2RRH5 827 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 PRRG1O14668 218 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 ABLIM3O94929 683 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 IL18RAPO95256 599 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 LDHAP00338 332 aaKnown RBP16.55■□□□□ 0.24
TRIM28-203ENST00000593582 ATF2P15336 505 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 GARTP22102 1010 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 FSHRP23945 695 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 AARSP49588 968 aaKnown RBP eCLIP16.55■□□□□ 0.24
TRIM28-203ENST00000593582 YWHAHQ04917 246 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-203ENST00000593582 TPGS2Q68CL5 300 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 CNNM4Q6P4Q7 775 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 SUGP1Q8IWZ8 645 aaKnown RBP16.55■□□□□ 0.24
TRIM28-203ENST00000593582 MYADMQ96S97 322 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 FAM213AQ9BRX8 229 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 FGFBP2Q9BYJ0 223 aa16.55■□□□□ 0.24
TRIM28-203ENST00000593582 MTCL1Q9Y4B5 1905 aaKnown RBP16.55■□□□□ 0.24
TRIM28-203ENST00000593582 TECTAO75443 2155 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 TULP1O00294 542 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-203ENST00000593582 PRPF6O94906 941 aaKnown RBP16.54■□□□□ 0.24
TRIM28-203ENST00000593582 OAZ2O95190 189 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 LAMP2P13473 410 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 LILRA4P59901 499 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 TDGQ13569 410 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 C9orf57Q5W0N0 161 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 CRELD2Q6UXH1 353 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-203ENST00000593582 NT5DC4Q86YG4 428 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 FBXL6Q8N531 539 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 SAAL1Q96ER3 474 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 C7orf25Q9BPX7 421 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 CYP4F11Q9HBI6 524 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 DPP3Q9NY33 737 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 KCNH3Q9ULD8 1083 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms