RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ZNF132P52740 706 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 NOMO3P69849 1222 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 DUPD1Q68J44 220 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 TSHZ1Q6ZSZ6 1077 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 RHPN2Q8IUC4 686 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 TRAPPC12Q8WVT3 735 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 PCYOX1Q9UHG3 505 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 RBM47A0AV96 593 aaKnown RBP21.02■□□□□ 0.96
CLIP3-206ENST00000593074 KRT14P02533 472 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 RRM1P23921 792 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 MAPK4P31152 587 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 RWDD2BP57060 319 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 TFDP1Q14186 410 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 CYP1B1Q16678 543 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 EFCAB12Q6NXP0 572 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 DPP9Q86TI2 863 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 EFCAB13Q8IY85 973 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 ZDHHC14Q8IZN3 488 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 ARL8AQ96BM9 186 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 CYFIP2Q96F07 1278 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 PARK7Q99497 189 aaKnown RBP21.02■□□□□ 0.96
CLIP3-206ENST00000593074 ERP44Q9BS26 406 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 RNPEPQ9H4A4 650 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 PTPRHQ9HD43 1115 aa21.02■□□□□ 0.96
CLIP3-206ENST00000593074 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.02■□□□□ 0.96
CLIP3-206ENST00000593074 SURF1Q15526 300 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 GJC2Q5T442 439 aaPredicted RBP21.01■□□□□ 0.95
CLIP3-206ENST00000593074 MPZL3Q6UWV2 235 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 GPR142Q7Z601 462 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 SLC13A5Q86YT5 568 aaPredicted RBP21.01■□□□□ 0.95
CLIP3-206ENST00000593074 JAMLQ86YT9 394 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 C1orf131Q8NDD1 294 aaKnown RBP21.01■□□□□ 0.95
CLIP3-206ENST00000593074 VCPIP1Q96JH7 1222 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 MTMR12Q9C0I1 747 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 FZD8Q9H461 694 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 ACKR2O00590 384 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 ASAP2O43150 1006 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 ACTN2P35609 894 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 HSD17B3P37058 310 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 UAP1Q16222 522 aaPredicted RBP21.01■□□□□ 0.95
CLIP3-206ENST00000593074 ZNF484Q5JVG2 852 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 SCARA3Q6AZY7 606 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 PPP1R2P3Q6NXS1 205 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 MAMDC4Q6UXC1 1216 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 LRIG3Q6UXM1 1119 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 PHF13Q86YI8 300 aaPredicted RBP21.01■□□□□ 0.95
CLIP3-206ENST00000593074 C18orf8Q96DM3 657 aa21.01■□□□□ 0.95
CLIP3-206ENST00000593074 ZSWIM8A7E2V4 1837 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 SHOX2O60902 331 aaPredicted RBP21■□□□□ 0.95
CLIP3-206ENST00000593074 CST3P01034 146 aaPredicted RBP21■□□□□ 0.95
CLIP3-206ENST00000593074 LGALS2P05162 132 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 CFHP08603 1231 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 SLC1A1P43005 524 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 PTGIRP43119 386 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 DRG2P55039 364 aaKnown RBP21■□□□□ 0.95
CLIP3-206ENST00000593074 SIX1Q15475 284 aaPredicted RBP21■□□□□ 0.95
CLIP3-206ENST00000593074 PTPN18Q99952 460 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 NFKBIZQ9BYH8 718 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 TRIM7Q9C029 511 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 DPH5Q9H2P9 285 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 RASAL2Q9UJF2 1139 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 RPS6KA5O75582 802 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 C22orf31O95567 290 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 SNAI1O95863 264 aaPredicted RBP21■□□□□ 0.95
CLIP3-206ENST00000593074 MTMR3Q13615 1198 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 DUOXA2Q1HG44 320 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 ATF7IP2Q5U623 682 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 SMYD5Q6GMV2 418 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 TMC3Q7Z5M5 1100 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 C12orf50Q8NA57 414 aaPredicted RBP21■□□□□ 0.95
CLIP3-206ENST00000593074 PPTC7Q8NI37 304 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 NLRP4Q96MN2 994 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 PLVAPQ9BX97 442 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 PLXNA1Q9UIW2 1896 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 MTUS1Q9ULD2 1270 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 PLAAQ9Y263 795 aa21■□□□□ 0.95
CLIP3-206ENST00000593074 PLXNB2O15031 1838 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 GJB1P08034 283 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 HOXC6P09630 235 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 INSRRP14616 1297 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 FLT3P36888 993 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 ADCYAP1R1P41586 468 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 CLCN3P51790 818 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 MBTD1Q05BQ5 628 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 TTC27Q6P3X3 843 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 PLEKHH3Q7Z736 793 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 AFG1LQ8WV93 481 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 MAGOHBQ96A72 148 aaKnown RBP20.99■□□□□ 0.95
CLIP3-206ENST00000593074 EMID1Q96A84 441 aaPredicted RBP20.99■□□□□ 0.95
CLIP3-206ENST00000593074 RUNDC3BQ96NL0 473 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 NIF3L1Q9GZT8 377 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 KATNBL1Q9H079 304 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 ZDHHC18Q9NUE0 388 aa20.99■□□□□ 0.95
CLIP3-206ENST00000593074 TCRBV7S2A1N4TA0A589 114 aa20.98■□□□□ 0.95
CLIP3-206ENST00000593074 H0YGN5 161 aa20.98■□□□□ 0.95
CLIP3-206ENST00000593074 THAP12O43422 761 aa20.98■□□□□ 0.95
CLIP3-206ENST00000593074 IGBP1P78318 339 aa20.98■□□□□ 0.95
CLIP3-206ENST00000593074 C1QBPQ07021 282 aaKnown RBP20.98■□□□□ 0.95
CLIP3-206ENST00000593074 PTP4A2Q12974 167 aa20.98■□□□□ 0.95
CLIP3-206ENST00000593074 GRB14Q14449 540 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms